Resource Type:
Polypeptide
Name:
DCAR_024573
Identifier:
DCAR_024573.mRNA-protein
Sequence:
MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQL
ATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQ
PAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGE
PGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQG
NYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWR
DFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEF
QEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIV
TGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSM
LLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKERVPGKRRRDLVTCLQK
LGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIK
CSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSS
FMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCG
ASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGI
ATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHA
VFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCN
ENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGL
VHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRP
MLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASI
VSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPS
LVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCP
WPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAAL
GLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIF
MREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKV
KLAASLAATLAWFGGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAML
GGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISL
GCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWNEELAL
SLLAAGGVGTMGAAAELIGQSSL*
Sequence Length:
1324
Sequence Checksum:
a291ab3ec1a975fe2c327a30f915afe7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_024573, derives from mRNA, DCAR_024573. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GP28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5941671.1}))
HSP 1 Score: 1953.72 bits (5060), Expect = 0.000e+0
Identity = 969/1328 (72.97%), Postives = 1122/1328 (84.49%), Query Frame = 0
Match: A0A7J7GP28 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5941671.1}))
HSP 1 Score: 1953.72 bits (5060), Expect = 0.000e+0
Identity = 969/1328 (72.97%), Postives = 1122/1328 (84.49%), Query Frame = 0
Query: 1 MAITSCQIN-WDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKE-TGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQSSL 1323
M + S N WD+VLE TK+AQ KG DP+LWAIQLSS LNSAGVSLPSP+LA LLVSHICWDNNVP+AWKFLEKAL F IVPP+LVLALLS +IP R S+PAA+RLYMELLKRHA TL S + P+ I+NS+D VL LS++FG+ + EPGILVVEFIFSI WQLLDA+LDDE L+EL P+KK W+ K ++M++D NY+E+R HQERL+++NTV AIEL GQFLQNK T +L+LAR+NMP HW F++ +QLL+ NSSALRNSK+ T E L QL S T K+++RECK S QEF E++A LASS GLCHG SRSA+WLPLDL+LEDAMD SQVNATSAIE++TG +KALQA +G+TW++ FLGLWMAALRLVQRE DPIEGPVP L TRL MLL+I TLV+++LI+EEE + T E E + H KE+ VPG RRRDL++ LQ LGD+K LLTPP+SVI ANQAAAKAMMFI+ IN G+AY +C S++D + CSGN+HHLI+EACIAR LLDTS YFWPGYVNG +QI H +PVQVP WSSFMKG L+P +INALVS+PASS AEL+K+FE AV+GSDD+K AAT+LCGASL GWN+QEHTV FI RLL P+PADY G++SHLI YAPMLN+LLVGIA VDCVQIF LHGLV QLAG+LMPICEVFGSCVPN SWT TGEEISAHAVFSNAFALLL LWRFNHPPLEHGVG VPPVG+QLTPEYLL VRNS LV + N++ D+ +RR++A A+SS +PIFVD+FPKLKVWYRQH ACIAS LSGLVHGTPVHQIV+ LL MMF+K IN + ++T SGS++SS G E T +RP L WD+LEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLA+IVS+FSAEV+RG+WKPVFMNG DWPSPAANL++VEEQIKKILAAT VDVPSLVAGGSSPATLPLPLAAFVSLTITYKLD SQRFLNLAGPALE+LAAGCPWPCMPIVASLWTQKAKRWSDFL+FSASRTVFLH+N AV+QLLKSCFTA LGL + SS+GGVG LLGHGF S +G +SPVAPGILYLR YRSIRD++F+REEIISLLMQSV+DI+C+ +E + K+KKAKNG +YGQVSLAT MT+VKLAASL A+L W GG+ L+QSLIKETLPSWFISVHRS+ E+ + G VAMLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG H+EF+ASALDGKISLGC+ A WRAYVSGF SLMV CTP W+ E+DV+VLKR+SKGL WN EELA +LL GGVGTMG AAELI +S +
Sbjct: 1 MEVVSAHSNIWDSVLELTKVAQGKGIDPLLWAIQLSSKLNSAGVSLPSPELANLLVSHICWDNNVPIAWKFLEKALAFKIVPPLLVLALLSSRVIPSRCSRPAAYRLYMELLKRHALTLKSHMDGPDFQKIMNSIDNVLHLSQIFGLQSSEPGILVVEFIFSIVWQLLDASLDDEVLMELTPEKKSKWVTKSQDMEVDSDDNYDEERIEHQERLQNLNTVEAIELIGQFLQNKVTSRILYLARQNMPRHWGGFVKRIQLLVANSSALRNSKLTTAEALTQLTSDTCKILARECKLSSPQEFHEVMASGSLASSTGLCHGASRSALWLPLDLMLEDAMDGSQVNATSAIEVITGLMKALQAFNGTTWHESFLGLWMAALRLVQREADPIEGPVPRLDTRLCMLLTITTLVVIDLIEEEESSPTDETECGDRIHCKEKQVPGNRRRDLISSLQSLGDYKGLLTPPQSVISTANQAAAKAMMFISGINVGSAYFECISVEDLPMNCSGNMHHLIVEACIARNLLDTSAYFWPGYVNGRINQIPHTLPVQVPSWSSFMKGAPLSPTMINALVSTPASSLAELEKVFETAVKGSDDEKVAAATVLCGASLTQGWNIQEHTVCFINRLLSPPIPADYLGSESHLICYAPMLNILLVGIAPVDCVQIFFLHGLVAQLAGSLMPICEVFGSCVPNASWTLPTGEEISAHAVFSNAFALLLKLWRFNHPPLEHGVGNVPPVGSQLTPEYLLLVRNSHLVSSGNIHSDRYKRRVSAVASSSPPKPIFVDSFPKLKVWYRQHQACIASTLSGLVHGTPVHQIVDGLLNMMFRK-INRASSSVTCVTSGSSSSSGPGNEDTSARPKLPAWDVLEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSFFSAEVTRGIWKPVFMNGTDWPSPAANLSHVEEQIKKILAATWVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDNSSQRFLNLAGPALEALAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHNNDAVVQLLKSCFTATLGLNVTPISSNGGVGALLGHGFGSHFYGGISPVAPGILYLRVYRSIRDMMFLREEIISLLMQSVRDIMCSVPPKESLEKMKKAKNGTRYGQVSLATAMTQVKLAASLGASLVWLSGGLALIQSLIKETLPSWFISVHRSELEEGSPGVVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGPHLEFVASALDGKISLGCNWAIWRAYVSGFLSLMVACTPTWVLEVDVEVLKRLSKGLRQWNEEELAFALLGVGGVGTMGIAAELIIESEI 1327
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C4Q4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548581.1}))
HSP 1 Score: 1908.26 bits (4942), Expect = 0.000e+0
Identity = 970/1324 (73.26%), Postives = 1113/1324 (84.06%), Query Frame = 0
Match: A0A5J5C4Q4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548581.1}))
HSP 1 Score: 1908.26 bits (4942), Expect = 0.000e+0
Identity = 970/1324 (73.26%), Postives = 1113/1324 (84.06%), Query Frame = 0
Query: 1 MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEV-HNEKHSKERVPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQS 1321
MA++ W++VLE TK+AQ KG DP+LWAIQLSSNLNSAGVSLPSP+LA LLVSHICW NNVP+AWKFLEKAL+ IVPP+LVLALLS +IP RH PAAFRLYMELL+RHAFTL S P+ +NSVD VL L+++FG+ A EPGIL VEFIFSI WQLLDA+LDDEGLLEL P+KK W KP++M++DG +Y+E R HQERL+++N+V+AIEL QFLQNK T +L+LAR+NMP HW F++ +QLL +SSALRNSKV TPE+L+QL S TRKV+SREC S LQ+F ++A LASSAGLCH TSRSA+WLPLDL+LED MD SQVNATSAIEI+TG VK +QA++G+TW++ FL LWMAALRLVQRERDPIEGPVPHL TRL MLLSI TLV+ +LI+EE+ A E E + ++ +++VPG R DLV+ LQ LGD++ LLTPP+SVI AANQAAAKAMMF++ IN G+AY +C S+KD I CSGN+ HLI+EACIAR LLDTS YFWPGYVNG + I H+VP QVPGWSSFMKG LTP +INALVS+PASS AEL+KIFE+AV+GSDD+K AATILCGASL GWN+QEHTVYFITRLL LPVPA+YSG+DSHLI YAPMLNVLLVGIA VDCVQIFSLHGLVPQLAG+LMPICEVFGSCVP+VSWT GEEISAH VFSNAFALLL LWRFNHPPLEH VG+VPPVG+QLTPEYLL VRNS LV + NV+ D+N+RRL+A ++SS +PIFVD+FPKLKVWYRQH A IAS SGLVHGTPVHQIV+ LL MMF+KI + S +S ++T +P L WDILEAVPFVVDA+LTAC HGRLSPRELCTGLKDLAD+LPASLA+IVSYFSAEV+RGVWKPVFMNG DWPSPAANL+NVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDK SQRFL+LAGPALESLAAGCPWPCM IVASLWTQKAKRWSDFL+FSASRTVFLH+N AV+QLL+SCFT +LGL ++ SS+GGVG LLGHGF S G +SPVAPGILYLR YRSIRDI+F+ EEI+SLLM SV+DI+C+G +E + KLKKAK GM+YGQVSLA MT+VKLAASL A+L W GG+ LVQSL KETLPSWFISVHRS+ + GG VAMLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG HMEFLASALDGKIS GCD ATW AYVSGF SLMVGCTP W+ E+DV+VLKR+SKGL WN EELAL+LL AGG GTMGAAAELI +S
Sbjct: 1 MALSVQSSLWESVLELTKVAQDKGSDPLLWAIQLSSNLNSAGVSLPSPELANLLVSHICWANNVPMAWKFLEKALMVKIVPPMLVLALLSTRVIPNRHLHPAAFRLYMELLRRHAFTLKSFTNGPDYQETMNSVDAVLHLAQIFGLQASEPGILAVEFIFSIVWQLLDASLDDEGLLELTPEKKSRWATKPQDMEVDGHDSYHENRVEHQERLQNINSVVAIELICQFLQNKVTSRILYLARQNMPTHWAGFVQRMQLLAASSSALRNSKVTTPEVLLQLTSDTRKVLSRECIRSSLQQFHVVMASGSLASSAGLCHSTSRSALWLPLDLLLEDVMDGSQVNATSAIEIITGLVKTVQAINGTTWHETFLVLWMAALRLVQRERDPIEGPVPHLDTRLCMLLSITTLVVADLIEEEDSAAIDEIECSYTDQWEEKQVPGHRCMDLVSSLQSLGDYQGLLTPPQSVISAANQAAAKAMMFVSGINHGSAYFECISMKDMPINCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGRINPIPHSVPAQVPGWSSFMKGAPLTPGMINALVSAPASSLAELEKIFELAVKGSDDEKIAAATILCGASLISGWNIQEHTVYFITRLLSLPVPANYSGSDSHLIGYAPMLNVLLVGIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCVPDVSWTLTPGEEISAHTVFSNAFALLLKLWRFNHPPLEHRVGDVPPVGSQLTPEYLLLVRNSHLVSSGNVHKDRNKRRLSAVSSSSSPKPIFVDSFPKLKVWYRQHQAFIASTPSGLVHGTPVHQIVDGLLNMMFRKIGRGSQSLTSVTSVSSGSSGTGSEDTSLKPKLPAWDILEAVPFVVDASLTACGHGRLSPRELCTGLKDLADYLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKASQRFLDLAGPALESLAAGCPWPCMSIVASLWTQKAKRWSDFLVFSASRTVFLHNNDAVVQLLRSCFTTSLGLNATPLSSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDIMFLTEEIVSLLMHSVRDILCSGLPKESLEKLKKAKIGMRYGQVSLAAAMTRVKLAASLGASLVWLSGGLGLVQSLFKETLPSWFISVHRSEQAEGLGGMVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGSHMEFLASALDGKISPGCDWATWHAYVSGFVSLMVGCTPTWVLEVDVEVLKRLSKGLRQWNEEELALALLGAGGFGTMGAAAELIIES 1324
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ADM6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527547.1}))
HSP 1 Score: 1907.11 bits (4939), Expect = 0.000e+0
Identity = 946/1322 (71.56%), Postives = 1080/1322 (81.69%), Query Frame = 0
Match: A0A5J5ADM6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8527547.1}))
HSP 1 Score: 1907.11 bits (4939), Expect = 0.000e+0
Identity = 946/1322 (71.56%), Postives = 1080/1322 (81.69%), Query Frame = 0
Query: 1 MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKERVPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAW-FGGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWNEELALSLLAAGGVGTMGAAAELIGQS 1321
MA T WD++LE TK+AQ KG +P+LWAIQLSSNLNSAGVSLPSP+LA LLVSHICW NNVP+AWKFLEKALV IVPP+LV ALLS +IP RHS+P+AFRLYMELLK HAFTL S + P+ +NS+D +L LS++FG+ A EPG+L VEF+FSI WQLLDA+LDDEGLLEL P+KK W K M ++G +Y+EKR HQERL+++NTV+AIEL GQFLQNK T +L+LAR+NMP HW F+ +QLL+ NSSALRNS+V TPE+L+QLIS TRKV+S EC TS LQEF ++A LASSA LC G S SA WLPLDLVLEDAMD SQVNATSAIEI+TG +K LQA++G+TW++ FL LWMAALRLVQRERDPIEGPVPHL TRL MLLSI TLV+ +LI+EEE A E E N H KE+ QAAAKAMMF++ I G++YS+C ++KD CSGN+ HLI+EACIAR LLDTS YFWPGYVNG +QI +VP QVPGWSSFMKG L PV+INALVS+PASS EL+KIFE+AV+GSDD+K AATILCGASL CGWN+QEHTVYFITRLL PVP DYSG+DSHLI YAPMLN+LLVGIA VDCVQIFSLHGLVPQLAG+LMPICEVFGSCVPNVSW TGEEISAHAVFSNAF+LLL LWRFNHPPLEH VG++PPVG+QLTPEYLL VRNS LV + NV+ D+N+RRL+A A+SS +PIFVD+FPKLKVWYRQ A IAS LSGLVHGTPVHQ V+ LL MMF KI + ++TS S S+ + ++T RP L WDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLAD+LPASL +IVSYFSAEV+RGVWKPV MNG DWPSPAANL+NVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDK S+RFL LAGPALESLAAGCPWPCMPIVASLWTQK KRWSDFL+FSAS TVFLH+N AV+QLLKSCFTA+LGL ++L SS GGVG LLGHGF S G +SPVAPGILYLR YRSIRDI F+ EEI+SLLM SV+DIVC+G +E + KLKKAKNGM+YGQVSLAT M +VKLAAS+ A+L W +GG++LVQSL+KE LPSWFISVH + E+ +GG V MLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG HMEFLASALDGKISLGCD ATWRAYVSGF SLMV C P W+ E+DV+VLKR+SKGL WNEELA SLL GG+GTMGAAA+LI +S
Sbjct: 1 MAFTVQSSLWDSILELTKVAQDKGSEPLLWAIQLSSNLNSAGVSLPSPELANLLVSHICWANNVPMAWKFLEKALVTKIVPPMLVFALLSTRVIPNRHSRPSAFRLYMELLKIHAFTLESYMNGPDYQKNMNSLDTLLHLSQIFGLQASEPGVLAVEFVFSIVWQLLDASLDDEGLLELTPEKKSRWATKHHGMALNGHDSYDEKRIEHQERLQNINTVVAIELIGQFLQNKVTSRILYLARQNMPTHWGSFVHRIQLLVANSSALRNSEVTTPEVLLQLISDTRKVLSGECITSSLQEFHAVIASGSLASSARLCRGASHSAFWLPLDLVLEDAMDGSQVNATSAIEIITGLIKGLQAINGTTWHETFLVLWMAALRLVQRERDPIEGPVPHLDTRLCMLLSITTLVVADLIEEEEGATIDEIECSNTNHWKEK----------------------------------QAAAKAMMFVSGIGVGSSYSECITMKDLPFNCSGNMCHLIVEACIARNLLDTSAYFWPGYVNGNINQIPCSVPAQVPGWSSFMKGAPLNPVMINALVSAPASSLTELEKIFELAVKGSDDEKIGAATILCGASLICGWNIQEHTVYFITRLLSPPVPVDYSGSDSHLIGYAPMLNILLVGIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCVPNVSWILTTGEEISAHAVFSNAFSLLLKLWRFNHPPLEHQVGDLPPVGSQLTPEYLLLVRNSHLVSSGNVHKDRNKRRLSAVASSSSPKPIFVDSFPKLKVWYRQQQAFIASALSGLVHGTPVHQTVDGLLNMMFGKIRSQSLISVTSGSSSSSGAGS--EQTSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADYLPASLVAIVSYFSAEVTRGVWKPVCMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKASRRFLKLAGPALESLAAGCPWPCMPIVASLWTQKVKRWSDFLVFSASSTVFLHNNDAVVQLLKSCFTASLGLNATLLSSHGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDIKFLTEEIVSLLMHSVRDIVCSGLPKESLEKLKKAKNGMRYGQVSLATAMARVKLAASVGASLVWLYGGLELVQSLMKEILPSWFISVHSFEWEEGSGGMVTMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGCHMEFLASALDGKISLGCDLATWRAYVSGFVSLMVNCMPTWVLEVDVEVLKRLSKGLRQWNEELAFSLLGLGGIGTMGAAAKLIFES 1286
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BZM9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548575.1}))
HSP 1 Score: 1901.72 bits (4925), Expect = 0.000e+0
Identity = 971/1324 (73.34%), Postives = 1108/1324 (83.69%), Query Frame = 0
Match: A0A5J5BZM9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548575.1}))
HSP 1 Score: 1901.72 bits (4925), Expect = 0.000e+0
Identity = 971/1324 (73.34%), Postives = 1108/1324 (83.69%), Query Frame = 0
Query: 1 MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQS 1321
MA++ W++VLE TK+AQ KG DP+LWAIQLSSNLNSAGVSLPSP+LA LLVSHICW NNVP+AWKFLEKAL+ IVPP+LVLALLS +IP RH PAAFRLYMELL+RHAFTL S P+ +NSVD VL L+++FG+ A EPGIL VEFIFSI WQLLDA+LDDEGLLEL P+KK W KP++M++DG +Y+E R HQERL+++N+V+AIEL QFLQNK T +L+LAR+NMP HW F++ +QLL +SSALRNSKV TPE+L+QL S TRKV+SREC S LQ+F ++A LASSAGLCH TSRSA+WLPLDL+LED MD SQVNATSAIEI+TG VK +QA++G+TW++ FL LWMAALRLVQRERDPIEGPVPHL TRL MLLSI TLV+ +LI+EE+ A E E KE+ VPG R DLV+ LQ LGD++ LLTPP+SVI AANQAAAKAMMF + IN G+AY +C S+KD I CSGN+ HLI+EACIAR LLDTS YFWPGYVNG + I H+VP QVPGWSSFMKG LTP +INALVS+PASS AEL+KIFE+AV+GSDD+K AATILCGASL GWN+QEHTVYFI +LL LPVPA+YSG+DSHLI YAPMLNVLLVGIA VDCVQIFSLHGLVPQLAG+LMPICEVFGSCVP+VSWT GEEISAH VFSNAFALLL LWRFNHPPLEH VG+VPPVG+QLTPEYLL VRNS LV + NV+ D+N+RRL+A ++SS +PIFVD+FPKLKVWYRQH A IAS SGLVHGTPVHQIV+ LL MMF+KI + S +S ++T +P L WDILEAVPFVVDA+LTAC HGRLSPRELCTGLKDLAD+LPASLA+IVSYFSAEV+RGVWKPVFMNG DWPSPAANL+NVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDK SQRFLNLAGPALESLAAGCPWPCM IVASLWTQKAKRWSDFL+FSASRTVFLH+N AV+QLL+SCFT +LGL ++ SS+GGVG LLGHGF S G +SPVAPGILYLR YRSIRDI+F+ EEI+SLLM SV+DI+C+G +E + KLKKAK GM+YGQVSLA MT+VKLAASL A+L W GG+ LVQSL KETLPSWFISVHRS+ + GG VAMLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG HMEFLASALDGKIS GCD ATW AYVSGF SLMVGCTP W+ E+DV+VLKR+SKGL WN EELAL+LL AGG GTMGAAAELI +S
Sbjct: 1 MALSVQSSLWESVLELTKVAQDKGSDPLLWAIQLSSNLNSAGVSLPSPELANLLVSHICWANNVPMAWKFLEKALMVKIVPPMLVLALLSTRVIPNRHLHPAAFRLYMELLRRHAFTLKSFTNGPDYQETMNSVDAVLHLAQIFGLQASEPGILAVEFIFSIVWQLLDASLDDEGLLELTPEKKSRWATKPQDMEVDGHDSYHENRVEHQERLQNINSVVAIELICQFLQNKVTSRILYLARQNMPTHWAGFVQRMQLLAASSSALRNSKVTTPEVLLQLTSDTRKVLSRECIRSSLQQFHVVMASGSLASSAGLCHSTSRSALWLPLDLLLEDVMDGSQVNATSAIEIITGLVKTVQAINGTTWHETFLVLWMAALRLVQRERDPIEGPVPHLDTRLCMLLSITTLVVADLIEEEDSAAIDEIECSYTDQWKEKQVPGHRCMDLVSSLQSLGDYQGLLTPPQSVISAANQAAAKAMMFGSGINHGSAYFECISMKDMPINCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGHINPIPHSVPAQVPGWSSFMKGAPLTPGMINALVSAPASSLAELEKIFELAVKGSDDEKIAAATILCGASLISGWNIQEHTVYFIIKLLSLPVPANYSGSDSHLIGYAPMLNVLLVGIAPVDCVQIFSLHGLVPQLAGSLMPICEVFGSCVPDVSWTLTPGEEISAHTVFSNAFALLLKLWRFNHPPLEHRVGDVPPVGSQLTPEYLLLVRNSHLVSSGNVHKDRNKRRLSAVSSSSSPKPIFVDSFPKLKVWYRQHQAFIASTPSGLVHGTPVHQIVDGLLNMMFRKIGRGSQSLTSVTSVSSGSSGTGSEDTSLKPKLPAWDILEAVPFVVDASLTACGHGRLSPRELCTGLKDLADYLPASLATIVSYFSAEVTRGVWKPVFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMSIVASLWTQKAKRWSDFLVFSASRTVFLHNNDAVVQLLRSCFTTSLGLNATPLSSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDIMFLTEEIVSLLMHSVRDILCSGLPKESLEKLKKAKIGMRYGQVSLAAAMTRVKLAASLGASLVWLSGGLGLVQSLFKETLPSWFISVHRSEQAEGLGGMVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGSHMEFLASALDGKISPGCDWATWHAYVSGFVSLMVGCTPTWVLEVDVEVLKRLSKGLRQWNEEELALALLGAGGFGTMGAAAELIIES 1324
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HDK9 ((Uncharacterized protein {ECO:0000313|EMBL:CCB50380.1}))
HSP 1 Score: 1886.69 bits (4886), Expect = 0.000e+0
Identity = 948/1326 (71.49%), Postives = 1104/1326 (83.26%), Query Frame = 0
Match: F6HDK9 ((Uncharacterized protein {ECO:0000313|EMBL:CCB50380.1}))
HSP 1 Score: 1886.69 bits (4886), Expect = 0.000e+0
Identity = 948/1326 (71.49%), Postives = 1104/1326 (83.26%), Query Frame = 0
Query: 1 MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQSSL 1323
MA++ WDN+LE T +AQ KG DP+LWA+QLSS+L+SAGVSLPS ++A LLVSHICW NNVP+AWKFLEKAL+ IVPP+ VLALLS +IP RHS+P A+RLY+EL+KRHAFTL S + PN + +D VL LS FG+ A EPGILVVEFIFS+ LLDA+LDDEGL+EL P+KK W +M+ID +Y+EKRT ERL+ +NTVMAI+L GQFLQNKAT +L+LARRNMP HW F++ +QLL NSSALRNSKV+TPE L+ L S TR V+SR+CK+S LQ+F ++A LASSAGLCHG SRSA+WLPLDLVLEDAMD S V+ATSAIE +TG +K LQA++G+TW+D FLGLW+AALRLVQRERDPIEGP+P L TRL +LLSI TLV+ +LI+EEE A E E H H KE+ VPGK R+DLV+ LQ LGD++ LLTPP+SVI AANQAAAKAMM ++ IN G+AY + S+KD I CSGN+ HLI+EACIAR LLDTS YFWPGYVNG +QI H++P QV GWSSFMKG L+PV+INALVS+PASS AEL+K+FEIAV+GSDD+K +AATILCGASL GWN+QEH V+FITRLL PVPADYSG+DSHLI YAPMLN+LLVGIA+VDCVQIFSLHGLVP LAG+LMPICEVFGSCVPNVSWT TGEEI+AHA+FSNAF LLL LWRFNHPPLEHGVG+VPPVG+QLTPEYLL VRNS LV + ++ ++N+ R + A+SS +PIF+D+FPKLKVWYRQH ACIAS LSGLVHGTPVHQIV+ LL MMF+KI N G+Q+++S SGS++SS G + RP L WDILE VPFVVDAALTACAHGRLSPREL TGLKDLADFLPASLA+I+SYFSAEV+RGVW PVFMNG DWPSPAANL+NVEEQI+KILAATGVDVPSL AGG+SPATLPLPLAAF SLTITYK+D+ SQRFLNLAGPALE+LAA CPWPCMPIVASLWTQKAKRWSDFL+FSASRTVFLH++ AV+QLLKSCFTA LGLK++ SS+GGVG LLGHGF S G +SPVAPGILYLR+YRSIRD++FM EEI+SLLM V++I + ER KLKKAKN MKYGQ+SL + +VKL ASLAA+L W GG+ LVQSLIKETLPSWFISVHRS+ E+ +GG VAMLGGYALA+F +LCGA WGVD+SSSASKRRPKILG HMEFLASALDG ISLGCD ATWRAYVSGF SLMVGCTP W+ E+DV VLKR+SKGL WN EELAL+LL GGVGTM AAAELI ++ +
Sbjct: 1 MAVSVHTSIWDNILEHTNVAQEKGSDPLLWAVQLSSSLSSAGVSLPSVEVANLLVSHICWGNNVPIAWKFLEKALMIKIVPPMPVLALLSTRVIPSRHSRPTAYRLYLELIKRHAFTLKSLIDGPNYQKDMKFIDSVLHLSLAFGLQASEPGILVVEFIFSMVLMLLDASLDDEGLIELTPEKKSKW---ANDMEIDSHDDYDEKRTDLHERLQKINTVMAIDLIGQFLQNKATSKILYLARRNMPTHWVVFLQRIQLLGANSSALRNSKVITPEALLHLTSDTRIVLSRKCKSSSLQKFHAVMAFGSLASSAGLCHGASRSALWLPLDLVLEDAMDGSLVSATSAIETITGLIKVLQAINGTTWHDTFLGLWIAALRLVQRERDPIEGPMPRLDTRLCLLLSITTLVVADLIEEEESAPNDETERHPTNHWKEKHVPGKCRKDLVSSLQMLGDYEGLLTPPQSVISAANQAAAKAMMLVSGINVGSAYFEFISMKDMPINCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGRINQIPHSIPPQVLGWSSFMKGAPLSPVMINALVSTPASSLAELEKVFEIAVRGSDDEKISAATILCGASLIRGWNIQEHIVHFITRLLSPPVPADYSGSDSHLIAYAPMLNILLVGIASVDCVQIFSLHGLVPHLAGSLMPICEVFGSCVPNVSWTLTTGEEINAHAIFSNAFTLLLKLWRFNHPPLEHGVGDVPPVGSQLTPEYLLLVRNSHLVSSGTIH-NRNKTRFSGVASSSSEQPIFLDSFPKLKVWYRQHQACIASTLSGLVHGTPVHQIVDGLLNMMFRKI-NRGSQSLSSVTSGSSSSSGPGSDDPLRPKLPAWDILEVVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWNPVFMNGTDWPSPAANLSNVEEQIRKILAATGVDVPSLAAGGNSPATLPLPLAAFASLTITYKIDRASQRFLNLAGPALEALAADCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHNSDAVVQLLKSCFTATLGLKTTPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRAYRSIRDVVFMAEEIVSLLMHFVREIASSQLSGERSEKLKKAKNEMKYGQISLGAALARVKLIASLAASLVWLSGGLGLVQSLIKETLPSWFISVHRSEQEEGSGGMVAMLGGYALAYFTVLCGAFVWGVDSSSSASKRRPKILGSHMEFLASALDGNISLGCDCATWRAYVSGFVSLMVGCTPTWVLEVDVNVLKRLSKGLRQWNEEELALALLGIGGVGTMAAAAELIIETEI 1321
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RV44 ((Mediator of RNA polymerase II transcription subunit 33A like {ECO:0000313|EMBL:PSS33906.1}))
HSP 1 Score: 1880.53 bits (4870), Expect = 0.000e+0
Identity = 952/1326 (71.79%), Postives = 1103/1326 (83.18%), Query Frame = 0
Match: A0A2R6RV44 ((Mediator of RNA polymerase II transcription subunit 33A like {ECO:0000313|EMBL:PSS33906.1}))
HSP 1 Score: 1880.53 bits (4870), Expect = 0.000e+0
Identity = 952/1326 (71.79%), Postives = 1103/1326 (83.18%), Query Frame = 0
Query: 1 MAITSCQIN--WDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQS 1321
MA+ S Q + WD VLE TK+AQ KG DP+LWA+Q+SSNLN AGV LP P+LA LLVSHICW NNVP+AWKFL+KAL F I PP+LVLALLS +IP R S+PAA+RLYMELLKRHA L S + PN H I+NSVD VL LS++FG+ A EPG++VVEFIFSI QL+DA+LDDEGLL+L P+KK W+ K ++M++ NY+EKR HQE L+++NT MA+EL GQFLQNK T +L+LAR+NMP HW F++ +QLL+ NSSA+RNSKV T E+L QL + T K++SRECK +F E++A LASSAGL HG SRSA+WLPLDLVLED MD SQVNATSA+EI+TG +KALQA +G+TW++ FLGLWMAALRL+QRERDPIEGPVP L TRL +LL+I+TLV+ +LI+EEE A T E E + H KE+ VPG RR DLV+ LQ LGD+K LL PP SVI AANQAAAKAMMFI+ IN G AY +C S+KD + CSGN+HHLI+EACI+R LLDTS YFWPGYVNG +QI H +PVQVP WSSFMKG LT ++ NALVS+PASS AEL+K+FEIAV+G DD+K AA+ILCGASL GWN+QEHT YFI+RLLC PVPADYSG+DSHLI Y PMLNVLLVGIA VDCVQIFSLHGLVPQLA +LMPICEVFGSCVPNVSWT TG+E+SAHAVFSNAFALLL LWRFNHPPLEHGVG+VPPVG+QLTPEYLL VRNS LV + N++ D+ RRRL++ A+SS +PIF+D+FPKLKVWYRQHLACIAS L+GLVHGTPVHQIV+ LL MMF+KI T S++S ++T RP L WD+LEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLA+IVSYFSAEV+RG+WKP FMNG DWPSPAANL+ VE QIKKILAATGVDVPSLV+GG SPATLPLPLAAFVSLTITYKLDK SQRFLNLAGPALE+LAAGCPWPCMPIVASLWTQK KRWSDFL+FSASRTVFLH+N AV+QLLKSCFTA LGL + SS+GGVG LLGHGF S G +SPVAPGILYLR YRSIRD++F+REEIISLLMQ V++I C+ +ER+ KLKKAKNG++Y QVSLAT MT+VKLAASL A+L W GG LVQSLIKETLPSWFISVHRS+ E+ +GG VAML GYALA+FA+LCGA +WG D+SSSASKRRPKILG HMEFLASALDGKISLGC+ ATWRAY+SGF SLMV CTP W+ E++V+VLKR+SKGL WN EELA +LL GGVGTMG AAELI +S
Sbjct: 1 MAVVSVQSSRLWDCVLELTKVAQEKGSDPLLWALQVSSNLNRAGVVLPCPELANLLVSHICWANNVPIAWKFLDKALAFKIAPPLLVLALLSNRVIPNRSSRPAAYRLYMELLKRHALALKSHTEGPNFHKIMNSVDNVLHLSQIFGLEASEPGVIVVEFIFSIVCQLVDASLDDEGLLKLTPEKKSKWVTKSQDMEVASDDNYDEKRIEHQEILQNLNTAMAVELIGQFLQNKVTSRILYLARQNMPLHWGSFVQQIQLLVANSSAVRNSKVTTAEVLQQLATGTCKILSRECKMISPHKFHEVMASASLASSAGLWHGASRSALWLPLDLVLEDLMDGSQVNATSAVEIITGLLKALQAFNGTTWHETFLGLWMAALRLIQRERDPIEGPVPRLDTRLCLLLTISTLVVADLIEEEESAPTDEMECTDSIHGKEKEVPGTRRGDLVSSLQSLGDYKGLLAPPHSVISAANQAAAKAMMFISGINVGTAYFECVSMKDMPLNCSGNMHHLIVEACISRNLLDTSAYFWPGYVNGRINQIPHTLPVQVPSWSSFMKGAPLTSILKNALVSAPASSLAELEKVFEIAVKGLDDEKIAAASILCGASLIRGWNIQEHTAYFISRLLCPPVPADYSGSDSHLISYGPMLNVLLVGIAPVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVSWTLPTGDEVSAHAVFSNAFALLLKLWRFNHPPLEHGVGDVPPVGSQLTPEYLLAVRNSHLVSSGNIHSDRCRRRLSSVASSSSPKPIFLDSFPKLKVWYRQHLACIASTLTGLVHGTPVHQIVDGLLNMMFRKINRASQSVTTITSGSSSSSGTGNEDTTLRPKLPAWDVLEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSYVEGQIKKILAATGVDVPSLVSGGRSPATLPLPLAAFVSLTITYKLDKASQRFLNLAGPALETLAAGCPWPCMPIVASLWTQKVKRWSDFLVFSASRTVFLHNNDAVVQLLKSCFTATLGLNVTPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDMMFIREEIISLLMQFVREIACSAVSKERMGKLKKAKNGIRYEQVSLATAMTQVKLAASLGASLVWLSGGSALVQSLIKETLPSWFISVHRSEQEESSGGVVAMLAGYALAYFAMLCGAFSWGADSSSSASKRRPKILGTHMEFLASALDGKISLGCNWATWRAYMSGFLSLMVACTPTWVLEVEVEVLKRLSKGLRQWNEEELAFALLGVGGVGTMGVAAELIIES 1326
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PK13 ((Mediator of RNA polymerase II transcription subunit 33A like {ECO:0000313|EMBL:PSR92681.1}))
HSP 1 Score: 1875.91 bits (4858), Expect = 0.000e+0
Identity = 958/1316 (72.80%), Postives = 1104/1316 (83.89%), Query Frame = 0
Match: A0A2R6PK13 ((Mediator of RNA polymerase II transcription subunit 33A like {ECO:0000313|EMBL:PSR92681.1}))
HSP 1 Score: 1875.91 bits (4858), Expect = 0.000e+0
Identity = 958/1316 (72.80%), Postives = 1104/1316 (83.89%), Query Frame = 0
Query: 10 WDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKE-TGSRPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWNEE-LALSLLAAGGVGTMGAAAELIGQS 1321
WD+VLE T +AQ KG DP+LWA+Q+SSNLN AGV LP P+LA LLVSHICW NNVP+AWKFLEKAL F I PP+LVLALLS +IP R +PAA+RLYM+LLKRHA TL S PN H ++NSVD VL LS+ FG+ A EPG++VVEFIFSI QL+DA+LDDEGLLEL P+KK W+ K ++M+ID NY+EKR HQERL+++NTVMA+EL G FLQNK T +L+LAR+NMP HW F++ +QLL+ NSSA+RNSKV T E L QL + T K++S ECK Q+F E++A LASSAGLCHG SRSA+WLPLDLVLED MD SQVNATSA+EI+TG +KALQA +G+TW++ FLGLWMAALRL+QRE+DPIEGPVP L TRL MLL+I++LVI +LI+EEE A T E E + H KE+ VPG RR DLV+ LQ LGD K LL PP+SVI AANQAAAKAMMFI+ IN G AY +C S+KD + CSGN+HHLI+EACIAR LLDTS YFWPGYVNGL +QI +PVQVP WSSFMKG LTP + NALVS+PASS AEL+K+FEIAV+GSDD+K AA ILCGASL GWN+QEH VYFI+RLLC PVPADYSG+DSHLI Y PMLNVLLVGIA VDCVQIFSLHGLVPQLA +LMPICEVFGSCVPN SWT TG E+SAHAVFSNAFALLL LWRFNHPPLEHGVG+VPPVG+QLTPEYLL VRNS LV + N++ D+ RRRL++ A SS +PIF+D+FPKLKVWYRQHLACIAS L+GLVHGTPVHQIV+ LL MMF+K IN +Q++T+ SGS++SS G E T RP L WD+LEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLA+IVSYFSAEV+RG+WKP FMNG DWPSPAANL+NVE QIKKILAATGVDVPSL+AGG SPATLPLPLAAFVSLTITYKLDK SQRFLNLAGPALE+LAAGCPWPCMPIVASLWTQKAKRWSD+L+FSAS+TVFLH+N AV+QLLKSCFTA LGL + SS+GGVG LLGHGF S G +SPVAPGILYLR YRSIRD++F+REEIISLLMQ V++I C+ ++R+ KLKK KNG++YGQVSLAT MT+VKLAASL A+L W GG LVQSLIKETLPSWFISVHRS+ E+ +GG VAMLGGYALA+FA LCGA +WGVD+SSSAS+RRP+ILG HMEFLASALDGK+SLGC+ ATW AYVSGF SLMV CTP W+ E+D++VLKR+SKGL WNEE LA LL GGVGTMG AAELI +S
Sbjct: 12 WDSVLELTNVAQEKGSDPLLWALQVSSNLNCAGVVLPCPELANLLVSHICWANNVPIAWKFLEKALAFKIAPPLLVLALLSNRVIPNRSLRPAAYRLYMDLLKRHALTLKSHTDGPNFHKVMNSVDNVLHLSQTFGLQASEPGVIVVEFIFSIVCQLVDASLDDEGLLELTPEKKSKWVTKSQDMEIDSYDNYDEKRIEHQERLQNLNTVMAVELIGNFLQNKVTSRILYLARQNMPLHWGSFLQQIQLLVANSSAVRNSKVTTAEALQQLATGTCKILSWECKMISPQKFHEVMASGSLASSAGLCHGASRSALWLPLDLVLEDFMDGSQVNATSAVEIITGLLKALQAFNGTTWHESFLGLWMAALRLIQREKDPIEGPVPRLDTRLCMLLTISSLVIADLIEEEESAATDEMECTDGIHGKEKEVPGMRRGDLVSSLQSLGDCKGLLAPPQSVISAANQAAAKAMMFISGINVGTAYFECVSMKDMPLNCSGNMHHLIVEACIARNLLDTSAYFWPGYVNGLINQIPQTLPVQVPSWSSFMKGAPLTPTMKNALVSAPASSLAELEKVFEIAVKGSDDEKIAAAAILCGASLIRGWNIQEHIVYFISRLLCPPVPADYSGSDSHLISYGPMLNVLLVGIAPVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNFSWTLPTGAEVSAHAVFSNAFALLLKLWRFNHPPLEHGVGDVPPVGSQLTPEYLLAVRNSHLVSSGNIHSDRCRRRLSSVARSSSPKPIFLDSFPKLKVWYRQHLACIASTLTGLVHGTPVHQIVDGLLNMMFRK-INRASQSVTTVTSGSSSSSGPGNEDTFVRPKLPAWDVLEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLATIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSNVEGQIKKILAATGVDVPSLIAGGRSPATLPLPLAAFVSLTITYKLDKASQRFLNLAGPALETLAAGCPWPCMPIVASLWTQKAKRWSDYLVFSASQTVFLHNNDAVVQLLKSCFTATLGLNVTPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDMMFIREEIISLLMQCVREIACSAVSKDRMEKLKKVKNGIRYGQVSLATAMTQVKLAASLGASLVWLSGGSALVQSLIKETLPSWFISVHRSEQEESSGGVVAMLGGYALAYFATLCGAFSWGVDSSSSASRRRPRILGTHMEFLASALDGKVSLGCNWATWCAYVSGFLSLMVACTPTWVLEVDMEVLKRLSKGLRQWNEEKLAFDLLGVGGVGTMGVAAELIIES 1326
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5TIU9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4262895.1}))
HSP 1 Score: 1870.9 bits (4845), Expect = 0.000e+0
Identity = 929/1324 (70.17%), Postives = 1088/1324 (82.18%), Query Frame = 0
Match: A0A6J5TIU9 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4262895.1}))
HSP 1 Score: 1870.9 bits (4845), Expect = 0.000e+0
Identity = 929/1324 (70.17%), Postives = 1088/1324 (82.18%), Query Frame = 0
Query: 5 SCQIN-WDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGS-RPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQSSL 1323
S QI+ WD+V+E TK+AQ KG DP+LW IQLSSNL S GVS+PS +LA +LVS+I WDNNVP+ WKFLEKAL+ IVPP+LVLALLS +IP R SQP A+RLY+ELLKRH FTL SQ+K PN + + S+D +L LS +FG+PA +PGILVVEF+FSI WQLLDA+LDDEGLL P+KK W +P+ M+ID +Y EKR H E L+ NTVMAIE+ GQFLQNK T +L+LARRN+ AHW FI+ +QLL +NS ALRNSK++TPE L+QL S + V+ RECKT+ Q++ ++A LASSAGLCHG SRSA+WLPLDLVLEDAMD QV+ATS++E +TG VK QA++G++W+D FLGLW+AALRLVQRERDPIEGPVP L TRL MLL I TLV+ +LI+EEEIA T E E + KE+ VPGKRR DLV+ LQ LGD++ LLTPP+SV+ AANQAAAKAM+ ++ ++ G+AY +C S+KD I SGNL HLI+EACIAR LL+TS Y WPGYVNG +Q+ H VP QVPGWSSFM G LTP+V+NALVSSPASS AEL+K+F+IAV GSDD+K +AATI CGASL GWN+QEHT +FI RLL PVPADYSG DSHLI YAPMLNVL+VGIA+VDCVQIFSLHGLVPQLA +LMPICEVFGSCVPNV WT TGEEISAHAVFSNAF LLL LWRFNHPPLEHGVG+VP V ++LTPEYLL VRNS LV + + + D+N+RRL+ A+SS EP+FVD+FPKLKVWYRQH ACIAS LSGLVHGTPVHQIV+ LL MMF K I+ G+Q++TS S S++SS G E S RP L WDILEAVPFVVDAALTACAHG+LSPREL TGLKDLADFLPASLA+IVSYFSAEV+RG+WKPVFMNG DWPSPA NL++VEEQIKKILAATGV VPSL GGSSPATLPLPLAAFVSLTITYK+D+ S+RFL+LAGP LE LAAGCPWPCM IVASLWTQKAKRWSDFL+FSASRTVFL + +++QLLKSCFTA LGL ++ SS+GGVG LLGHGF S G +SPVAPGILYLR YRSI DI+FM EEI+++LM SV++I C +ER+ KLK KN M+Y QVSLA M++VKLAASL A+L W GG+ LVQSLIKETLPSWFIS+H S+ + + G VAMLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG HMEFLASALDGKISLGCD ATWRAYVSGF +LMVGCTP W+ E+DV VLKR+S GL WN EELAL+LL GGVGTMGAAAELI ++ +
Sbjct: 4 SVQISIWDSVVELTKVAQQKGSDPLLWVIQLSSNLKSRGVSMPSVELANVLVSYIFWDNNVPITWKFLEKALMLKIVPPMLVLALLSTRVIPCRRSQPVAYRLYIELLKRHIFTLKSQIKGPNYQITMKSIDSILHLSWIFGLPASDPGILVVEFLFSIVWQLLDASLDDEGLLNCTPEKKSKWAIEPQEMEIDCHNSYYEKRNEHNEILQDSNTVMAIEIIGQFLQNKVTSRILYLARRNLAAHWTSFIQRLQLLGLNSLALRNSKILTPEALLQLTSDSHIVLPRECKTASSQKYHAVMASGSLASSAGLCHGNSRSALWLPLDLVLEDAMDGYQVDATSSVETITGLVKTFQAINGTSWHDTFLGLWIAALRLVQRERDPIEGPVPRLDTRLCMLLCITTLVVSDLIEEEEIAPTNETEYGSVNRRKEKEVPGKRRYDLVSSLQMLGDYQGLLTPPQSVVSAANQAAAKAMLILSGVSIGSAYFECISMKDMPINFSGNLRHLIVEACIARNLLETSAYSWPGYVNGRINQLPHGVPTQVPGWSSFMLGATLTPIVVNALVSSPASSLAELEKVFKIAVNGSDDEKISAATIFCGASLIRGWNIQEHTAHFIIRLLSPPVPADYSGVDSHLIGYAPMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVPWTLTTGEEISAHAVFSNAFTLLLKLWRFNHPPLEHGVGDVPTVASRLTPEYLLSVRNSYLVSSGSAHQDRNKRRLSTVASSSSPEPVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPVHQIVDGLLNMMFTK-ISRGSQSLTSVNSPSSSSSGPGNEDNSLRPKLPAWDILEAVPFVVDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPVFMNGTDWPSPAVNLSHVEEQIKKILAATGVHVPSLAPGGSSPATLPLPLAAFVSLTITYKVDRASERFLSLAGPTLECLAAGCPWPCMAIVASLWTQKAKRWSDFLVFSASRTVFLQNGDSMVQLLKSCFTATLGLNATPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRMYRSITDIVFMTEEILTILMHSVREIACTALSKERLQKLKTTKNEMRYEQVSLAAAMSRVKLAASLGASLVWLTGGLCLVQSLIKETLPSWFISMHWSEQGEGSEGMVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGTHMEFLASALDGKISLGCDSATWRAYVSGFVTLMVGCTPKWVLEVDVHVLKRLSNGLRQWNEEELALALLGIGGVGTMGAAAELIVENEM 1326
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4A3R7 ((mediator of RNA polymerase II transcription subunit 33A {ECO:0000313|RefSeq:XP_015888316.1}))
HSP 1 Score: 1869.74 bits (4842), Expect = 0.000e+0
Identity = 942/1329 (70.88%), Postives = 1088/1329 (81.87%), Query Frame = 0
Match: A0A6P4A3R7 ((mediator of RNA polymerase II transcription subunit 33A {ECO:0000313|RefSeq:XP_015888316.1}))
HSP 1 Score: 1869.74 bits (4842), Expect = 0.000e+0
Identity = 942/1329 (70.88%), Postives = 1088/1329 (81.87%), Query Frame = 0
Query: 1 MAITSCQINWDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSAT-GEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGS-RPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRS-QHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQSSL 1323
MA++ WD+V+E TK+AQ KG DP+LWA+QLSSNL+SAGVSLPS +LA +LVS+ICWDNNVP+AWKFL+KAL+ IVPP+LVLALLS +IP R SQP A+RLY+ELLKRHAFTL SQ+ PN +I+ S+D VL LS++FG+PA EPGIL+VEFIFSI WQLLDA+LDDEGLL ++K W KP+ M+IDG NY+EK H E LK+ NTVMAI++ G+ LQNK T +L LAR N+P HW FI+ VQLL NS ALRNSK +TPE L++L V+SRE TS LQ+F +L LASSAGLCHG SRSA+WLPLDLVLEDAMD QV+A SAIE +TG +K LQA++G+TW+D FLGLW+AALRLVQR RDPIEGPVP L TRL +LL I TLV+ +LI+EEE A E E + H KE+ V G RR LV+ LQ LGD++ LL PP+SVI AA+QAAAKA+ FI+ + G+ Y +C ++KD + CSGNL HLI+EACIAR LLDTS YFWPGYVNG +QI H VP QVPGWSSFMKG LTPV+INALVSSPASS AEL+K+FE+AV GSDD+K +AA+ILCGASL GWN+QEHTV+FI RLL PVP +YSG DSHLI YAPMLNVL+VGIA+VDCVQIFSLHGLVPQLA +LMPICEVFGSCVPNVSWT AT GE+ISAHAVFSNAF LLL LWRFNHPPLEHGVG+VP VG+QLTPEYLL VRNS LV + N+ D+N++RL A A S +P+FVD+FPKLKVWYRQH ACIAS LSGL+HGTPVHQIV++LL MMF+ IN G Q++TS SGS++SS G E RP L WDILEAVPFVVDAALTACAHGRLSPREL TGLKDLADFLPASLA IVSYFSAEV+RG+WKP FMNG DWPSPAANL+NVEEQIKKILAATGVDVPSL AGGSSPATLPLPLAAFVSLTITYK+D+ S+RFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFL+FSASRTVFLH+ V QLLKSCF A LGL + + S+G VG LLGHGF S G +SPVAPGILYLR YRSIRDI+FM EEI+++LM SV+++ G +E + KLK KNGM+YGQVSLAT MT+VKLAASL A+L W GG+ LVQSLIKETLPSWFIS+HRS Q E GG V MLGGYALA+F +LCGA AWGVD+SSSASKRRPKIL HMEFLASALDGKISLGCD ATWRAYVSGF SLMV CTPNW+ E+DV+VLKR+S GL WN EELA++LL +GG+GTMGAAAELI ++ L
Sbjct: 1 MAVSIRTSLWDSVMELTKVAQQKGSDPLLWAVQLSSNLSSAGVSLPSVELANVLVSYICWDNNVPIAWKFLDKALMLKIVPPMLVLALLSSRVIPSRCSQPVAYRLYLELLKRHAFTLKSQINGPNYQVIMKSIDAVLHLSKMFGLPASEPGILLVEFIFSILWQLLDASLDDEGLLNHTLEQKSRWSTKPQEMEIDGHANYSEKSNEHNETLKNANTVMAIDIIGKLLQNKGTSRILFLARHNLPTHWISFIQQVQLLESNSLALRNSKTLTPEALLKLTIDNGTVLSRE--TSSLQKFLAVLTFGSLASSAGLCHGASRSALWLPLDLVLEDAMDGYQVDAISAIERITGLIKTLQAINGTTWHDTFLGLWIAALRLVQRGRDPIEGPVPRLDTRLCILLCITTLVVADLIEEEESAPIDETECGSTNHWKEKEVSGTRRNGLVSSLQMLGDYQGLLAPPQSVISAAHQAAAKAVFFISGVGVGSGYFECINVKDMPMNCSGNLRHLIVEACIARNLLDTSAYFWPGYVNGHINQIPHGVPSQVPGWSSFMKGAALTPVMINALVSSPASSLAELEKVFEVAVSGSDDEKISAASILCGASLIRGWNIQEHTVHFIIRLLSPPVPVNYSGCDSHLISYAPMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVSWTLATTGEDISAHAVFSNAFTLLLKLWRFNHPPLEHGVGDVPTVGSQLTPEYLLLVRNSHLVFSGNIVKDRNKKRLYAAATYSSPQPVFVDSFPKLKVWYRQHQACIASTLSGLIHGTPVHQIVDELLNMMFRA-INRGTQSLTSVTSGSSSSSGPGTEDNPLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLAGIVSYFSAEVTRGIWKPAFMNGTDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPATLPLPLAAFVSLTITYKIDRGSERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHNKNTVFQLLKSCFAATLGLNPTPSLSNGSVGALLGHGFGSHFCGGISPVAPGILYLRVYRSIRDIVFMTEEIVTILMNSVREVAFGGLPKEILEKLKTTKNGMRYGQVSLATAMTQVKLAASLGASLVWLTGGLVLVQSLIKETLPSWFISMHRSEQQEGSEGGMVGMLGGYALAYFVVLCGAFAWGVDSSSSASKRRPKILRTHMEFLASALDGKISLGCDGATWRAYVSGFVSLMVDCTPNWVLEVDVEVLKRLSNGLRQWNEEELAMALLGSGGIGTMGAAAELIVENDL 1326
BLAST of DCAR_024573 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5W1B0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4293535.1}))
HSP 1 Score: 1868.97 bits (4840), Expect = 0.000e+0
Identity = 930/1324 (70.24%), Postives = 1087/1324 (82.10%), Query Frame = 0
Match: A0A6J5W1B0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4293535.1}))
HSP 1 Score: 1868.97 bits (4840), Expect = 0.000e+0
Identity = 930/1324 (70.24%), Postives = 1087/1324 (82.10%), Query Frame = 0
Query: 5 SCQIN-WDNVLEFTKIAQHKGDDPMLWAIQLSSNLNSAGVSLPSPQLATLLVSHICWDNNVPVAWKFLEKALVFNIVPPILVLALLSKSIIPERHSQPAAFRLYMELLKRHAFTLISQLKWPNSHMIINSVDKVLQLSELFGVPAGEPGILVVEFIFSIAWQLLDAALDDEGLLELAPKKKFGWIFKPENMDIDGQGNYNEKRTTHQERLKSVNTVMAIELFGQFLQNKATFGMLHLARRNMPAHWRDFIEHVQLLIVNSSALRNSKVMTPELLVQLISATRKVMSRECKTSYLQEFQEILACDPLASSAGLCHGTSRSAIWLPLDLVLEDAMDASQVNATSAIEIVTGSVKALQAMSGSTWYDCFLGLWMAALRLVQRERDPIEGPVPHLVTRLSMLLSIATLVIVNLIKEEEIALTAEAEVHNEKHSKER-VPGKRRRDLVTCLQKLGDFKTLLTPPESVIPAANQAAAKAMMFIATINAGNAYSDCASIKDTSIKCSGNLHHLIIEACIARKLLDTSVYFWPGYVNGLTDQISHNVPVQVPGWSSFMKGGQLTPVVINALVSSPASSFAELDKIFEIAVQGSDDDKTTAATILCGASLNCGWNVQEHTVYFITRLLCLPVPADYSGTDSHLIRYAPMLNVLLVGIATVDCVQIFSLHGLVPQLAGALMPICEVFGSCVPNVSWTSATGEEISAHAVFSNAFALLLMLWRFNHPPLEHGVGEVPPVGTQLTPEYLLQVRNSQLVCNENVYWDQNRRRLAADANSSLSEPIFVDTFPKLKVWYRQHLACIASPLSGLVHGTPVHQIVNDLLTMMFKKIINNGNQTMTSAISGSTASSEIGKETGS-RPMLAGWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLASIVSYFSAEVSRGVWKPVFMNGVDWPSPAANLANVEEQIKKILAATGVDVPSLVAGGSSPATLPLPLAAFVSLTITYKLDKDSQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLIFSASRTVFLHDNGAVIQLLKSCFTAALGLKSSLTSSSGGVGPLLGHGFESQSHGELSPVAPGILYLRSYRSIRDIIFMREEIISLLMQSVKDIVCNGFRRERIAKLKKAKNGMKYGQVSLATVMTKVKLAASLAATLAWF-GGIQLVQSLIKETLPSWFISVHRSQHEDDAGGAVAMLGGYALAHFALLCGALAWGVDTSSSASKRRPKILGYHMEFLASALDGKISLGCDPATWRAYVSGFSSLMVGCTPNWLSELDVQVLKRISKGLMHWN-EELALSLLAAGGVGTMGAAAELIGQSSL 1323
S QI+ WD+V+E TK+AQ KG DP+LW IQLSSNL + GVS+PS +LA +LVS+I WDNNVP+ WKFLEKAL+ IVPP+LVLALLS +IP R SQP A+RLY+ELLKRH FTL SQ+K PN + + S+D +L LS +FG+PA +PGILVVEF+FSI WQLLDA+LDDEGLL P+KK W +P+ M+ID +Y EKR H E L+ NTVMAIE+ GQFLQNK T +L+LARRN+ AHW FI+ +QLL +NS ALRNSK++TPE L+QL S + V+ RECKT+ Q++ ++A LASSAGLCHG SRSA+WLPLDLVLEDAMD QV+ATS++E +TG VK QA++G++W+D FLGLW+AALRLVQRERDPIEGPVP L TRL MLL I TLV+ +LI+EEEIA T E E + KE+ VPGKRR DLV+ LQ LGD++ LLTPP+SV+ AANQAAAKAM+ ++ ++ G AY +C S+KD I SGNL HLI+EACIAR LL+TS Y WPGYVNG +Q+ H VP QVPGWSSFM G LTPVV+NALVSSPASS AEL+K+FEIAV GSDD+K +AATI CGASL GWN+QEHT +FI RLL PVPADYSG DSHLI YAPMLNVL+VGIA+VDCVQIFSLHGLVPQLA +LMPICEVFGSCVPNV WT TGEEISAHAVFSNAF LLL LWRFNHPPLEHGVG+VP V ++LTPEYLL VRNS LV + + + D+N+RRL+ A+SS EP+FVD+FPKLKVWYRQH ACIAS LSGLVHGTPVHQIV+ LL MMF K I+ G+Q++TS S S++SS G E S RP L WDILEAVPFVVDAALTACAHG+LSPREL TGLKDLADFLPASLA+IVSYFSAEV+RG+WKPVFMNG DWPSPA NL++VEEQIKKILAATGV VPSL GGSSPATLPLPLAAFVSLTITYK+D+ S+RFL+LAGP LE LAAGCPWPCM IVASLWTQKAKRWSDFL+FSASRTVFL + +++QLLKSCFTA LGL ++ SS+GGVG LLGHGF S G +SPVAPGILYLR YRSI DI+FM EEI+++LM SV++I C +ER+ KLK KN M+Y QVSLA M++VKLAASL A+L W GG+ LVQSLIKETLPSWFIS+H S+ + + G VAMLGGYALA+FA+LCGA AWGVD+SSSASKRRPKILG HMEFLASALDGKISLGCD ATWRAYVSGF +LMVGCTP W+ E+DV VLKR+S GL WN EELAL+LL GGVGTMGAAAELI ++ +
Sbjct: 4 SVQISIWDSVVELTKVAQQKGSDPLLWVIQLSSNLKTRGVSMPSVELANVLVSYIFWDNNVPITWKFLEKALMLKIVPPMLVLALLSTRVIPCRRSQPVAYRLYIELLKRHIFTLKSQIKGPNYQITMKSIDSILHLSWIFGLPASDPGILVVEFLFSIVWQLLDASLDDEGLLNCTPEKKSKWAIEPQEMEIDCHNSYYEKRNEHNEILQDSNTVMAIEIIGQFLQNKVTSRILYLARRNLAAHWTSFIQRLQLLGLNSLALRNSKILTPEALLQLTSDSHIVLPRECKTASSQKYHAVMASGSLASSAGLCHGNSRSALWLPLDLVLEDAMDGYQVDATSSVETITGLVKTFQAINGTSWHDTFLGLWIAALRLVQRERDPIEGPVPRLDTRLCMLLCITTLVVSDLIEEEEIAPTNETEYGSVNRRKEKEVPGKRRYDLVSSLQMLGDYQGLLTPPQSVVSAANQAAAKAMLILSGVSIGCAYFECISMKDMPINFSGNLRHLIVEACIARNLLETSAYSWPGYVNGRINQLPHGVPTQVPGWSSFMLGATLTPVVVNALVSSPASSLAELEKVFEIAVNGSDDEKISAATIFCGASLIRGWNIQEHTAHFIIRLLSPPVPADYSGGDSHLIGYAPMLNVLIVGIASVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNVPWTLTTGEEISAHAVFSNAFTLLLKLWRFNHPPLEHGVGDVPTVASRLTPEYLLSVRNSYLVSSGSAHQDRNKRRLSTVASSSSPEPVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPVHQIVDGLLNMMFTK-ISRGSQSLTSVNSPSSSSSGPGNEDNSLRPKLPAWDILEAVPFVVDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPVFMNGTDWPSPAVNLSHVEEQIKKILAATGVHVPSLAPGGSSPATLPLPLAAFVSLTITYKVDRASERFLSLAGPTLECLAAGCPWPCMAIVASLWTQKAKRWSDFLVFSASRTVFLQNGDSMVQLLKSCFTATLGLNATPISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRMYRSITDIVFMTEEILTILMHSVREIACTALSKERLQKLKTTKNEMRYEQVSLAAAMSRVKLAASLGASLVWLTGGLCLVQSLIKETLPSWFISMHWSEQGEGSEGMVAMLGGYALAYFAVLCGAFAWGVDSSSSASKRRPKILGTHMEFLASALDGKISLGCDSATWRAYVSGFVTLMVGCTPKWVLEVDVHVLKRLSNGLRQWNEEELALALLGIGGVGTMGAAAELIVENEM 1326
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7GP28 | E-Value: 0.000e+0, PID: 72.97 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5941... [more] |
| A0A5J5C4Q4 | E-Value: 0.000e+0, PID: 73.26 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| A0A5J5ADM6 | E-Value: 0.000e+0, PID: 71.56 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8527... [more] |
| A0A5J5BZM9 | E-Value: 0.000e+0, PID: 73.34 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| F6HDK9 | E-Value: 0.000e+0, PID: 71.49 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5038... [more] |
| A0A2R6RV44 | E-Value: 0.000e+0, PID: 71.79 | (Mediator of RNA polymerase II transcription subun... [more] |
| A0A2R6PK13 | E-Value: 0.000e+0, PID: 72.80 | (Mediator of RNA polymerase II transcription subun... [more] |
| A0A6J5TIU9 | E-Value: 0.000e+0, PID: 70.17 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4262... [more] |
| A0A6P4A3R7 | E-Value: 0.000e+0, PID: 70.88 | (mediator of RNA polymerase II transcription subun... [more] |
| A0A6J5W1B0 | E-Value: 0.000e+0, PID: 70.24 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4293... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |