Resource Type:
Polypeptide
Name:
DCAR_023470
Identifier:
DCAR_023470.mRNA-protein
Sequence:
MLSFLRCVLCCDDEINTGQSESESYYDESPSQPFNYRVILDNYDTFSRTQ
IDKTTRTHDICTTYRFPPKSNPPPVYNPPKQTLSRINDKVISESKKTPTG
KDTIVFPRPASSSSRVVLPPQPSPISPSLSKKPILAPAPSSSTLNQAKSQ
YNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYA
EDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNNNQKDEKIFVEFEV
DSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFH
AQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLL
KGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIR
DAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRE
LDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGI
EGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRS
TIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSSSSLSYFRIQVVK
SKEEVNMFGFFFSALKKVYHLFRKVFGNRQQSLPSTKQDLKDPQKYHLRQ
QLLPSTKQDLKDPDTYHLLQQSLPSTKQDLKDPEKYHLCQQSLPSTKQDL
KDPQKYHHCQQSLPSTKQDLKDPHKYHHNAFSFSRIKSPDSFPSAQNAPT
TQRQTLPSPVYNQPKDTLPRVTLKVDSGINTRKTPYAPIETHSALPGSAK
SPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRD
IVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEI
YERKGKYKQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNI
DPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQ
SIASASDMLFKKFLFPNCQPKYSSHYSTAITRIINITDSHPYLLEGSLSI
TRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREF
SDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVIL
STFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVL
VTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDD
SGFPATSYFR*
Sequence Length:
1261
Sequence Checksum:
ceb8b361347b9a3ed7ed792b93392e31
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_023470, derives from mRNA, DCAR_023470. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 297/460 (64.57%), Postives = 367/460 (79.78%), Query Frame = 0
HSP 2 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 271/458 (59.17%), Postives = 345/458 (75.33%), Query Frame = 0
Match: A0A2R6PGL3 ((RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1}))
HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 297/460 (64.57%), Postives = 367/460 (79.78%), Query Frame = 0
Query: 130 SKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
S KP L APS+ T ++AK+ Y VE+G++P++ IPED+K L +KD+VP VLKKPLSP TYKD+F+ALL+AED+Y+EKWDGF+M NVTL+L+EA I++RKGK N N N++KD+K+FV FE+DSIPERRPFLLSRDF SV+P+G K + FQG+I+RVV+SN+VLVEFGEDFH QHYS+CKYD+KFSFNRVCLKRAHQAI+A +D FR FLFPDC+PE L+ + F + KLD SA+ RI+ PP YL+EGPISV KQLSRTG V+ +AV Q+ Q+S +RILICAP NSTCDV R L+ + +SD+FRANAAFRELDGVP DILP C YK+ E FSCPS+ +L+ F+VILSTFMSSFRLH EGI GHF+HIFLVDASSA EPE++V L NL N T VV+TG P N +GW+RS IARQNGL SYFERLR+SKLY L+ + IT++ D
Sbjct: 176 STKPTLCLAPSTPTKSRAKNNYICVEKGASPVYAIPEDLKDLFKKDVVPRVLKKPLSPSTYKDFFDALLFAEDFYIEKWDGFKMENVTLELHEAAIYKRKGKYNNLNVNDEKDDKVFVAFEIDSIPERRPFLLSRDFVSVQPSGKKAELFQGLIYRVVKSNLVLVEFGEDFHYQHYSACKYDIKFSFNRVCLKRAHQAISAATDPLFRSFLFPDCKPENSLVAALVEFINPKLDPAQISAVRRILCHKTPPPYLVEGPISVNESKQLSRTGSVVCEAVFQIYQISPSSRILICAPINSTCDVITRILKNLIPESDMFRANAAFRELDGVPFDILPTCLYKR--ECFSCPSMQELRNFRVILSTFMSSFRLHGEGIMAGHFSHIFLVDASSATEPEIMVALANLANERTTVVMTGDPRNHTGWIRSNIARQNGLMISYFERLRKSKLYMSLDSKVITKLED 633
HSP 2 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 271/458 (59.17%), Postives = 345/458 (75.33%), Query Frame = 0
Query: 807 KPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQ-SSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYS--------------TAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 1249
KP LC A T K+ Y VE+G++P+Y IPED+K L K+D+VP VLKKPLSP TYKD+F ALL+AED+Y+EKWDGF+M++VTL LHEA IY+RKGKY + +KDDK+FV FEI +IPE+RPFLLSRDF SV+PSG+ + FQG+I+RVVKSN+VLVEFG+DFH QHYS+CKYD+KFSFNRVCLKRAHQ+I++A+D LF+ FLFP+C+P+ S + +A+ RI+ PYL+EG +S+ + QLS TG++V + V Q+ Q S +R+LICAP+NSTCDV R L+ +S++FRANAAFRE+DGVP DILP C YK+ E F+CPS+ +L F+VILSTFMSSFRLH GI GHF+H+ LVDASSATEPEIMV L NL + T V++TG P N + W+RS+IAR NGL SYFERLRKS Y L+ + IT+LED
Sbjct: 178 KPTLCLAPSTPTKSRAKNNYICVEKGASPVYAIPEDLKDLFKKDVVPRVLKKPLSPSTYKDFFDALLFAEDFYIEKWDGFKMENVTLELHEAAIYKRKGKYNNLNVNDEKDDKVFVAFEIDSIPERRPFLLSRDFVSVQPSGKKAELFQGLIYRVVKSNLVLVEFGEDFHYQHYSACKYDIKFSFNRVCLKRAHQAISAATDPLFRSFLFPDCKPENSLVAALVEFINPKLDPAQISAVRRILCHKTPPPYLVEGPISVNESKQLSRTGSVVCEAVFQIYQISPSSRILICAPINSTCDVITRILKNLIPESDMFRANAAFRELDGVPFDILPTCLYKR--ECFSCPSMQELRNFRVILSTFMSSFRLHGEGIMAGHFSHIFLVDASSATEPEIMVALANLANERTTVVMTGDPRNHTGWIRSNIARQNGLMISYFERLRKSKLYMSLDSKVITKLED 633
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 308/474 (64.98%), Postives = 373/474 (78.69%), Query Frame = 0
HSP 2 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Match: A0A5B6ZGX7 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42918.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42918.1}))
HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0
Identity = 308/474 (64.98%), Postives = 373/474 (78.69%), Query Frame = 0
Query: 121 QPSPISPSLSKKPILAPAPSSSTLNQAKSQY-NVVEQGST-PLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVL--LKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISV-TRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
QP P +P +K P L+ APS+ T + AK+ Y V E+G++ P++ IPEDIK LI KDIVPGVL+KPLS TYKDYF+ALLYA+DYYLEKWDGFEM NVTL+L+EA I+RRKGK+K+ N ++KD+K+FV FE+DSIPERRPFLLSRDFAS RP+ K + FQGII+RVV+S +VLVEFGEDFH+QHY + KY VKFSFNRVCLKRAHQAIAAVSD FR FLFPDC P L L HKLD SA+ +I++L GPP Y++EGP+SV T KQLSRTGM++R+A++Q+ + RILICAP NSTCDV MRS++ E+ +SD+FRANAAFRELDGVP DILP C YK E FSCP L +L++FKVI +TFMSSFRLH EG+ GHF+HIFLVDASSA EPE +V L NL N T+VVITGAP N+SG + S IARQNGL SYFERLR+SKLY+ L+P+ ITQ+ D
Sbjct: 134 QP-PAAPRCTK-PTLSLAPSNLTNHHAKTNYIRVDEEGTSYPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEMENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 603
HSP 2 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Query: 807 KPVLCHAAPGSTSHLTKSTY-NIVEEGST-PLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYST----------------AITRIINITDSHPYLLEGSLSI-TRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 1249
KP L A T+H K+ Y + EEG++ P+Y IPEDIK LI++DIVP VL+KPLS TYKDYF ALLYA+DYYLEKWDGFEM++VTL LHEA IY RKGK K + +KDDK+FV FEI +IPE+RPFLLSRDFAS RPS R + FQGII+RVVKS +VLVEFG+DFH+QHY + KY VKFSFNRVCLKRAHQ+IA+ SD LF+ FLFP+C P+ S +T A+ +I+++ PY++EG LS+ T + QLS TG +VR+ ++Q+ +T R+LICAP+NSTCDV MRS++ E +S++FRANAAFRE+DGVPDDILP C YK E F+CP L +L +FKVI +TFMSSFRLH+ G+ GHF+H+ LVDASSATEPE MV L NL + T V++TG+PGN+S + S IAR NGL SYFERLR+S Y+ L+P+FITQLED
Sbjct: 143 KPTLSLAPSNLTNHHAKTNYIRVDEEGTSYPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEMENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 603
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 307/476 (64.50%), Postives = 371/476 (77.94%), Query Frame = 0
HSP 2 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Match: A0A5B6ZEX6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA42917.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA42917.1}))
HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 307/476 (64.50%), Postives = 371/476 (77.94%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQY-NVVEQG-STPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVL--LKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISV-TRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
PP P + KP L+ APS+ T + AK+ Y V E+G S+P++ IPEDIK LI KDIVPGVL+KPLS TYKDYF+ALLYA+DYYLEKWDGFE+ NVTL+L+EA I+RRKGK+K+ N ++KD+K+FV FE+DSIPERRPFLLSRDFAS RP+ K + FQGII+RVV+S +VLVEFGEDFH+QHY + KY VKFSFNRVCLKRAHQAIAAVSD FR FLFPDC P L L HKLD SA+ +I++L GPP Y++EGP+SV T KQLSRTGM++R+A++Q+ + RILICAP NSTCDV MRS++ E+ +SD+FRANAAFRELDGVP DILP C YK E FSCP L +L++FKVI +TFMSSFRLH EG+ GHF+HIFLVDASSA EPE +V L NL N T+VVITGAP N+SG + S IARQNGL SYFERLR+SKLY+ L+P+ ITQ+ D
Sbjct: 140 PPAAPPCT-----KPALSLAPSNLTNHHAKTNYIRVDEEGTSSPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEIENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 608
HSP 2 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 277/463 (59.83%), Postives = 347/463 (74.95%), Query Frame = 0
Query: 807 KPVLCHAAPGSTSHLTKSTY-NIVEEG-STPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYSSHYST----------------AITRIINITDSHPYLLEGSLSI-TRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLED 1249
KP L A T+H K+ Y + EEG S+P+Y IPEDIK LI++DIVP VL+KPLS TYKDYF ALLYA+DYYLEKWDGFE+++VTL LHEA IY RKGK K + +KDDK+FV FEI +IPE+RPFLLSRDFAS RPS R + FQGII+RVVKS +VLVEFG+DFH+QHY + KY VKFSFNRVCLKRAHQ+IA+ SD LF+ FLFP+C P+ S +T A+ +I+++ PY++EG LS+ T + QLS TG +VR+ ++Q+ +T R+LICAP+NSTCDV MRS++ E +S++FRANAAFRE+DGVPDDILP C YK E F+CP L +L +FKVI +TFMSSFRLH+ G+ GHF+H+ LVDASSATEPE MV L NL + T V++TG+PGN+S + S IAR NGL SYFERLR+S Y+ L+P+FITQLED
Sbjct: 148 KPALSLAPSNLTNHHAKTNYIRVDEEGTSSPIYAIPEDIKALIEKDIVPGVLRKPLSSSTYKDYFDALLYADDYYLEKWDGFEIENVTLELHEAAIYRRKGKNKDLNKFDEKDDKVFVAFEIDSIPERRPFLLSRDFASARPSDRKAESFQGIIYRVVKSTLVLVEFGEDFHSQHYPARKYSVKFSFNRVCLKRAHQAIAAVSDSLFRNFLFPDCVPRNSLTITTSSQLSIDHKLDRVQVSAVRQILSLQGPPPYIVEGPLSVSTFSKQLSRTGMIVREAMLQIYRTFPSCRILICAPINSTCDVLMRSVKNEIRESDMFRANAAFRELDGVPDDILPSCLYKG--ECFSCPPLQELRRFKVICTTFMSSFRLHTEGMMAGHFSHIFLVDASSATEPEAMVALVNLANDKTSVVITGAPGNRSGLIHSKIARQNGLMISYFERLRESKLYKSLDPKFITQLED 608
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 309/464 (66.59%), Postives = 361/464 (77.80%), Query Frame = 0
HSP 2 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 287/468 (61.32%), Postives = 343/468 (73.29%), Query Frame = 0
Match: A0A5B7B2P6 ((Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA63122.1}) (3.6.4.13 {ECO:0000313|EMBL:MPA63122.1}))
HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0
Identity = 309/464 (66.59%), Postives = 361/464 (77.80%), Query Frame = 0
Query: 135 LAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFS-SHKLD---SSAISRIINLSGPPAYLLEGPISVTRDKQ-------LSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLR-KEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISD 585
L+ P + + +Q KS Y VE+G++PL+VIPEDIKGLI KDIVPGVLKKPLSP TYKDYF ALLYAEDYYLEKWDGFEM +VTL+L+EA I+RRKGK K+ N ++KD+KIFV F+VDSIP RRPFLLSRDFASVRP+G +V+PFQG+I+RVV+SN+VLVEFG+DFH+QHYS+CKYDVKFSFNRVCLKRAHQAIAA SD FR FLFP C L S HKLD +SA+ +I++L GPP YL+EGPISV KQ LS TGMV+R+AV+Q+ + RILICAP NSTCDV M SL+ +++ +SD+FRANAAFREL GVP DILP C YK E FS L +L+KFKVI STFMSS RLHNEGI GHFTHIFLVDASSAIEPE +V L NL N T VVITGAP N WVRS IARQNGLKTS FERL SKLY++L P+ IT + +
Sbjct: 231 LSLGPFNLSNDQTKSNYIQVEKGTSPLYVIPEDIKGLIEKDIVPGVLKKPLSPSTYKDYFAALLYAEDYYLEKWDGFEMKDVTLELHEAAIYRRKGKYKDLNEFDKKDDKIFVAFKVDSIPTRRPFLLSRDFASVRPSGREVEPFQGVIYRVVKSNLVLVEFGKDFHSQHYSACKYDVKFSFNRVCLKRAHQAIAAASDSLFRNFLFPACVSRNCYTASSQLLSIDHKLDVEEASAVRQILSLQGPPPYLVEGPISVISTKQDGGFIRRLSGTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKNRDIPESDMFRANAAFRELYGVPDDILPSCLYKG--ECFSFHLLKELKKFKVISSTFMSSVRLHNEGIMAGHFTHIFLVDASSAIEPEAIVALANLANEGTAVVITGAPGNSPFWVRSKIARQNGLKTSCFERLSDSKLYKNLGPKVITHLEN 692
HSP 2 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 287/468 (61.32%), Postives = 343/468 (73.29%), Query Frame = 0
Query: 822 TKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNC---------------QPKYSSHYSTAITRIINITDSHPYLLEGSLSITRNNQ-------LSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQ-REFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLE-------DDSGFPATSY 1258
TKS Y VE+G++PLY IPEDIK LI++DIVP VLKKPLSP TYKDYFAALLYAEDYYLEKWDGFEMKDVTL LHEA IY RKGKYK + KKDDKIFV F++ +IP +RPFLLSRDFASVRPSGR ++PFQG+I+RVVKSN+VLVEFG DFH+QHYS+CKYDVKFSFNRVCLKRAHQ+IA+ASD LF+ FLFP C K ++A+ +I+++ PYL+EG +S+ Q LSGTG +VR+ V+Q+ +T R+LICAP+NSTCDV M SL+ R+ +S++FRANAAFRE+ GVPDDILP C YK E F+ L +L KFKVI STFMSS RLH+ GI GHFTH+ LVDASSA EPE +V L NL + T V++TG+PGN WVRS IAR NGL+TS FERL S Y+ L P+ IT LE D FP +SY
Sbjct: 243 TKSNYIQVEKGTSPLYVIPEDIKGLIEKDIVPGVLKKPLSPSTYKDYFAALLYAEDYYLEKWDGFEMKDVTLELHEAAIYRRKGKYKDLNEFDKKDDKIFVAFKVDSIPTRRPFLLSRDFASVRPSGREVEPFQGVIYRVVKSNLVLVEFGKDFHSQHYSACKYDVKFSFNRVCLKRAHQAIAAASDSLFRNFLFPACVSRNCYTASSQLLSIDHKLDVEEASAVRQILSLQGPPPYLVEGPISVISTKQDGGFIRRLSGTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKNRDIPESDMFRANAAFRELYGVPDDILPSCLYKG--ECFSFHLLKELKKFKVISSTFMSSVRLHNEGIMAGHFTHIFLVDASSAIEPEAIVALANLANEGTAVVITGAPGNSPFWVRSKIARQNGLKTSCFERLSDSKLYKNLGPKVITHLENTERKSDDTYWFPDSSY 708
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 297/468 (63.46%), Postives = 360/468 (76.92%), Query Frame = 0
HSP 2 Score: 544.273 bits (1401), Expect = 2.465e-177
Identity = 275/471 (58.39%), Postives = 344/471 (73.04%), Query Frame = 0
Match: A0A834LRJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145093.1}))
HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 297/468 (63.46%), Postives = 360/468 (76.92%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSL-RKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESIT 581
P P P PS KP L+ APS+ST +K+ Y +VE+ ++P++ IPED+K I+ D+VPG+LK+PLSP TYKDYFEALLYAED+YLEKWDGFEM NVTL+L EA I++RKGK NKN +++KD+K+FV FE+DSIPERRPFLLSRDF SV P+GT+ +P QG+I+RVV+SN VLVEFGEDFHAQHYS+CKY+VKFSFNRVCLKRAHQAIA SD FR FLFPD + LL ++ LD SA+ I++ YL+EGPI++ R LSRTG V+ +AV+Q+ + S RILICAPTN CDV RSL R ++ +S+IFRANAAFRELDGVP DILP C Y+K+ E FSCPS+ +L K+KVI STFMSSFRLHN GI GHF+HIFLVDASS IEPE +V L NL N +T V +TGAPEN SGW+RS IARQNGL SYFERLRQSKLY L+ + IT
Sbjct: 160 PSSPKPRQPS--TKPFLSLAPSNSTNPNSKTAYILVEKDASPIYAIPEDLKDSIKNDVVPGILKRPLSPSTYKDYFEALLYAEDFYLEKWDGFEMKNVTLELEEASIYKRKGKQNNKNVDDEKDDKVFVTFELDSIPERRPFLLSRDFVSVSPSGTRAEPLQGLIYRVVKSNRVLVEFGEDFHAQHYSACKYNVKFSFNRVCLKRAHQAIATASDPLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAIDRSNVLSRTGSVVCEAVLQVYRTSPLCRILICAPTNKGCDVITRSLIRGKIPESNIFRANAAFRELDGVPEDILPSCLYRKERECFSCPSIHELLKYKVISSTFMSSFRLHNVGIMAGHFSHIFLVDASSVIEPEAMVALANLANENTVVTVTGAPENHSGWIRSHIARQNGLLISYFERLRQSKLYDSLDSKVIT 625
HSP 2 Score: 544.273 bits (1401), Expect = 2.465e-177
Identity = 275/471 (58.39%), Postives = 344/471 (73.04%), Query Frame = 0
Query: 793 SALPGSAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSS-GVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYS--------------SHYSTAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQR-EFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQL 1247
A P S K KP L A ST+ +K+ Y +VE+ ++P+Y IPED+K IK D+VP +LK+PLSP TYKDYF ALLYAED+YLEKWDGFEMK+VTL L EA IY+RKGK + +KDDK+FV FE+ +IPE+RPFLLSRDF SV PSG +P QG+I+RVVKSN VLVEFG+DFHAQHYS+CKY+VKFSFNRVCLKRAHQ+IA+ASD LF+ FLFP+ K S H +A+ I++ ++ PYL+EG ++I R+N LS TG++V + V+Q+ +TS L R+LICAP N CDV RSL R + +S IFRANAAFRE+DGVP+DILP C Y+++ E F+CPS+ +LLK+KVI STFMSSFRLH+ GI GHF+H+ LVDASS EPE MV L NL + +T V VTG+P N S W+RS IAR NGL SYFERLR+S Y L+ + IT L
Sbjct: 157 GAPPSSPKPRQPSTKPFLSLAPSNSTNPNSKTAYILVEKDASPIYAIPEDLKDSIKNDVVPGILKRPLSPSTYKDYFEALLYAEDFYLEKWDGFEMKNVTLELEEASIYKRKGKQNNKNVDDEKDDKVFVTFELDSIPERRPFLLSRDFVSVSPSGTRAEPLQGLIYRVVKSNRVLVEFGEDFHAQHYSACKYNVKFSFNRVCLKRAHQAIATASDPLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAIDRSNVLSRTGSVVCEAVLQVYRTSPLCRILICAPTNKGCDVITRSLIRGKIPESNIFRANAAFRELDGVPEDILPSCLYRKERECFSCPSIHELLKYKVISSTFMSSFRLHNVGIMAGHFSHIFLVDASSVIEPEAMVALANLANENTVVTVTGAPENHSGWIRSHIARQNGLLISYFERLRQSKLYDSLDSKVITVL 627
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 359/463 (77.54%), Query Frame = 0
HSP 2 Score: 534.258 bits (1375), Expect = 1.624e-172
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Match: A0A6P6V0P3 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027096408.1}))
HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 359/463 (77.54%), Query Frame = 0
Query: 127 PSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
P LS KP+L+ A +SST Q K++Y V++G+ +V PE+I LI KDIVPGVLK PLS TY DYF+ALLYAED +LEKWDGFEM NV L+ +EA I RKGK K ++QKDEK FV FE D IPERRPFLLSRDF SV+P G K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE V+L + + + ++ + + +I+ L G P YL+EGP+ + RD LSRTG+VI +A +Q+ ++ +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFK+ILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE +VPL N N T VV+TGAP N SGW+RS IAR+NGL TSYFERLR+S LY +L+P+ ITQ+ D+S+
Sbjct: 215 PPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESDQKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-HLSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNST 676
HSP 2 Score: 534.258 bits (1375), Expect = 1.624e-172
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Query: 798 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKY---KQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPK---YSSHY--------STAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDS 1251
S K P + KPVL A+ STS TK+ Y V++G+ Y PE+I LI++DIVP VLK PLS TY DYF ALLYAED +LEKWDGFEMK+V L HEA I+ RKGK+ K+S +KD+K FV FE IPE+RPFLLSRDF SV+P GR I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P+ S+ Y + + +I+ + + PYL+EG + I R++ LS TG ++ + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFK+ILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE MVPL N + T V+VTG+P N S W+RS IAR NGL TSYFERLRKS+ Y EL+P+ ITQL+D+S
Sbjct: 211 SQKPPPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESD--QKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDH-LSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNS 675
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 360/463 (77.75%), Query Frame = 0
HSP 2 Score: 533.487 bits (1373), Expect = 9.709e-172
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Match: A0A068U9J3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP04869.1}))
HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 287/463 (61.99%), Postives = 360/463 (77.75%), Query Frame = 0
Query: 127 PSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
P LS KP+L+ A +SST Q K++Y V++G+ +V PE+I LI KDIVPGVLK PLS TY DYF+ALLYAED +LEKWDGFEM NV L+ +EA I RKGK K ++QKDEK FV FE D IPERRPFLLSRDF SV+P G K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE V+L + + + ++ + + +I+ L G P YL+EGP+ + RD+ LSRTG+VI +A +Q+ ++ +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFK+ILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE +VPL N N T VV+TGAP N SGW+RS IAR+NGL TSYFERLR+S LY +L+P+ ITQ+ D+S+
Sbjct: 252 PPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESDQKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDR-LSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNST 713
HSP 2 Score: 533.487 bits (1373), Expect = 9.709e-172
Identity = 268/468 (57.26%), Postives = 345/468 (73.72%), Query Frame = 0
Query: 798 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKY---KQSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPK---YSSHY--------STAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDS 1251
S K P + KPVL A+ STS TK+ Y V++G+ Y PE+I LI++DIVP VLK PLS TY DYF ALLYAED +LEKWDGFEMK+V L HEA I+ RKGK+ K+S +KD+K FV FE IPE+RPFLLSRDF SV+P GR I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P+ S+ Y + + +I+ + + PYL+EG + I R+ +LS TG ++ + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFK+ILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE MVPL N + T V+VTG+P N S W+RS IAR NGL TSYFERLRKS+ Y EL+P+ ITQL+D+S
Sbjct: 248 SQKPPPLSTKPVLSLASTSSTSPQTKTKYIWVDKGAPSTYVFPENISALIEKDIVPGVLKMPLSMSTYMDYFQALLYAEDCHLEKWDGFEMKNVNLEFHEASIFTRKGKHNTLKESD--QKDEKTFVAFEFDKIPERRPFLLSRDFVSVQPCGRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLPPENVVLSTQYVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-RLSRTGVVIVEAALQILRLDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLEELGKFKIILSTFMSSFKLHSEGVKVGHFSHIFLVDASSATEPETMVPLANFANDKTIVVVTGAPRNHSGWIRSKIARENGLLTSYFERLRKSDLYNELDPKVITQLDDNS 712
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 286/479 (59.71%), Postives = 359/479 (74.95%), Query Frame = 0
HSP 2 Score: 534.258 bits (1375), Expect = 3.631e-173
Identity = 264/468 (56.41%), Postives = 340/468 (72.65%), Query Frame = 0
Match: A0A6P6VC28 ((probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP_027099522.1, ECO:0000313|RefSeq:XP_027099523.1}))
HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0
Identity = 286/479 (59.71%), Postives = 359/479 (74.95%), Query Frame = 0
Query: 111 SSSSRVVLPPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKN-KNNNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDSSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSS 588
S SS L S SP LS KP+L+ A +SS Q K++Y V++G + V P+DI+ LI KDIVPGVLK PLS Y DYF+ALLYAED +LEKWDGFE+ NV L+L+EA I+ RKGK K + ++ KDEK FV FE+D IPERRPFLLSRDF SV+P K++PFQG+I+RVV+SN+VL EFGE F++QH S CKYDVKFSFNRVCLKRAHQAIAAVS FR FLFPD PE +L + + + ++ + + +I+ L G P YL+EGP+ + RD LSRTG+ I +A +Q+ + +IL+CAP N TCD+ MR L+KE+ DSD+FRANAAFRELDG+P+DILP C Y+ + E FSCPSL +L KFKVILSTFMSSF+LH+EG++ GHF+HIFLVDASSA EPE ++P+ N N T VV+TGAP N SGWVRS IARQNGL SYFERLR+ +LY+ LNP I Q+ D+S+
Sbjct: 153 SPSSYTKLADSCSQKSPPLSTKPVLSLASTSSISPQTKTEYVWVKKGVSSTCVFPKDIRDLIEKDIVPGVLKLPLSMSRYMDYFQALLYAEDCHLEKWDGFEVKNVNLELHEASIYARKGKHKTLEESDLKDEKTFVAFEIDKIPERRPFLLSRDFVSVQPCSRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLAPEHEVLSTQRVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERD-HLSRTGVAIVEAALQILRRDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLKELGKFKVILSTFMSSFKLHSEGVKAGHFSHIFLVDASSATEPETMIPIANFANDKTIVVVTGAPRNSSGWVRSKIARQNGLMISYFERLRERELYKKLNPGVIMQLEDNSN 630
HSP 2 Score: 534.258 bits (1375), Expect = 3.631e-173
Identity = 264/468 (56.41%), Postives = 340/468 (72.65%), Query Frame = 0
Query: 798 SAKSPAVLNKPVLCHAAPGSTSHLTKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYK--QSSGVKKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFPNCQPKYS--------SHYSTA---ITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFYRELNPEFITQLEDDSG 1252
S KSP + KPVL A+ S S TK+ Y V++G + P+DI+ LI++DIVP VLK PLS Y DYF ALLYAED +LEKWDGFE+K+V L LHEA IY RKGK+K + S +K D+K FV FEI IPE+RPFLLSRDF SV+P R I+PFQG+I+RVVKSN+VL EFG+ F++QH S CKYDVKFSFNRVCLKRAHQ+IA+ S LF+ FLFP+ P++ + Y A + +I+ + + PYL+EG + I R++ LS TG + + +Q+ + ++L+CAP+N TCD+ MR L++E SDS++FRANAAFRE+DG+P DILP C Y+ + E F+CPSL +L KFKVILSTFMSSF+LHS G++ GHF+H+ LVDASSATEPE M+P+ N + T V+VTG+P N S WVRS IAR NGL SYFERLR+ Y++LNP I QLED+S
Sbjct: 165 SQKSPPLSTKPVLSLASTSSISPQTKTEYVWVKKGVSSTCVFPKDIRDLIEKDIVPGVLKLPLSMSRYMDYFQALLYAEDCHLEKWDGFEVKNVNLELHEASIYARKGKHKTLEESDLK-DEKTFVAFEIDKIPERRPFLLSRDFVSVQPCSRKIEPFQGVIYRVVKSNLVLAEFGESFYSQHRSECKYDVKFSFNRVCLKRAHQAIAAVSSALFRNFLFPDLAPEHEVLSTQRVDNRYQKANFVVHQILRLQGAPPYLVEGPMCIERDH-LSRTGVAIVEAALQILRRDPSKKILLCAPINRTCDLLMRGLKKEISDSDMFRANAAFRELDGIPVDILPSCLYESQTECFSCPSLKELGKFKVILSTFMSSFKLHSEGVKAGHFSHIFLVDASSATEPETMIPIANFANDKTIVVVTGAPRNSSGWVRSKIARQNGLMISYFERLRERELYKKLNPGVIMQLEDNSN 630
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H3A4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145472.1}))
HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 298/533 (55.91%), Postives = 380/533 (71.29%), Query Frame = 0
Match: A0A834H3A4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7145472.1}))
HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 298/533 (55.91%), Postives = 380/533 (71.29%), Query Frame = 0
Query: 119 PPQPSPISPSLSKKPILAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKN-NNQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFPDCRPEKVLLKGKILFSSHKLDS---SAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLYRDLNPESITQISDDSSSSLSYFRIQVVKSKEEVN--MFGFFFSALKKVYHLFRKVFGNRQQSLPSTKQDLKDPQK 645
P P P PS KP L+ APS+ T + +K+ Y + E+ ++P++ IPED K LI+ D+VPG+LK+PLSP TYKD+FEALLYAED+YLEKWDGFEM VTL+L EA IH+RKGK KN +++KD+K+FV FE+DSIPERRPFLLSRDF SV P+GTK +PFQG+I+RVV+SN VLV+FG+DFHAQHYS+CKY+VKFSFNRVCLKRAHQA+A SD FR FLFPD + LL ++ LD SA+ I++ YL+EGPI+V + LSRTG V+ +A++Q+ + S RILICAPTN CDV R LR ++ +S+IFRANAAFRELDGVP DILP C YKK+ E F+CPS+ +LQK+KVI STFMSSFRLHN GI+ GHF+HIFLVDASS IEPE +V L NL + ST V +TGAP N SGW+ S +ARQNGL SYFERLR+SKLY L+ S L I V ++ E+N +F +Y L + ++Q+ ++ +D P++
Sbjct: 255 PSSPKPHRPS--TKPFLSLAPSNPTNSNSKTAYILDEKDASPIYAIPEDFKDLIKNDVVPGILKRPLSPSTYKDFFEALLYAEDFYLEKWDGFEMEKVTLELEEASIHKRKGKYNKKNVDDEKDDKVFVAFELDSIPERRPFLLSRDFVSVSPSGTKAEPFQGLIYRVVKSNRVLVDFGKDFHAQHYSACKYNVKFSFNRVCLKRAHQAVATASDNLFRNFLFPDSISKNSLLTAQLPSIDSNLDWHQISAVRHILSNQNAVPYLVEGPIAVD-NFSLSRTGFVVCEAILQVYRTSPSCRILICAPTNKGCDVLTRRLRGKIPESNIFRANAAFRELDGVPEDILPSCLYKKERECFTCPSIRELQKYKVISSTFMSSFRLHNVGIKAGHFSHIFLVDASSVIEPEAMVALANLADESTVVTVTGAPRNHSGWIHSHMARQNGLLISYFERLRKSKLYDSLD------------SKLCLVSI-VARNIPEMNRYIFSGILLVGAAIYELIKGSGDDQQEETQNSNRDNSSPER 771
BLAST of DCAR_023470 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 292/443 (65.91%), Postives = 349/443 (78.78%), Query Frame = 0
HSP 2 Score: 531.176 bits (1367), Expect = 2.408e-171
Identity = 268/431 (62.18%), Postives = 324/431 (75.17%), Query Frame = 0
Match: A0A5J5BGT7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8541480.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 292/443 (65.91%), Postives = 349/443 (78.78%), Query Frame = 0
Query: 135 LAPAPSSSTLNQAKSQYNVVEQGSTPLFVIPEDIKGLIRKDIVPGVLKKPLSPQTYKDYFEALLYAEDYYLEKWDGFEMTNVTLKLNEAEIHRRKGKSKNKNN-NQKDEKIFVEFEVDSIPERRPFLLSRDFASVRPTGTKVDPFQGIIFRVVRSNIVLVEFGEDFHAQHYSSCKYDVKFSFNRVCLKRAHQAIAAVSDMFFRKFLFP-DCRPEKVLLKGKILFSSHKLD---SSAISRIINLSGPPAYLLEGPISVTRDKQLSRTGMVIRDAVVQLCQVSSHNRILICAPTNSTCDVFMRSLRKEVGDSDIFRANAAFRELDGVPIDILPFCPYKKKEEVFSCPSLSQLQKFKVILSTFMSSFRLHNEGIEGGHFTHIFLVDASSAIEPEVLVPLTNLTNASTNVVITGAPENQSGWVRSTIARQNGLKTSYFERLRQSKLY 572
L+ PS+ + +QAKS Y V++ S+PL+VIPEDIKGLI KDIVPGVLKK LS TYKDYF ALLYAEDYY EKW+GFEM NVTL+L +A I+RRKGK KN N ++KDEK+FV FE+DSIPERRPFLLSRDFA VRP+G +VDPF+GII+RVV+SN+VLVEFG+DFH+QHYS+CKYDV FSFNRVCLKRAHQAIAA SD FR FLFP C +++ LD +SA+ +I++L GPP YL++GPIS+ ++LSRTGMV+R+AV+Q+ + RILICAP NSTCDV M SL++++ +SD+FRANAAFRE VP DILP C Y+ E FSCPSL +L+KFKVI STFMSSFRLHNEGI GHF+HIFLVDAS A+EPE +VPL NL + T +VITG N WVRS IARQNGL TSYFERLR SKLY
Sbjct: 235 LSLGPSNLSNDQAKSNYIQVDKESSPLYVIPEDIKGLIEKDIVPGVLKKSLSQSTYKDYFAALLYAEDYYFEKWNGFEMKNVTLELQDAAIYRRKGKYKNLNKFDKKDEKMFVAFEIDSIPERRPFLLSRDFAFVRPSGREVDPFKGIIYRVVKSNLVLVEFGDDFHSQHYSACKYDVNFSFNRVCLKRAHQAIAAASDPLFRNFLFPAGCVARNSCTASQLVSIDRNLDMEKASAVRQILSLQGPPPYLVDGPISII-TRELSRTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKEDIPESDMFRANAAFREFYEVPDDILPSCLYEG--ECFSCPSLQKLKKFKVIFSTFMSSFRLHNEGIMAGHFSHIFLVDASFAMEPETIVPLANLADERTPLVITGTTGNGPRWVRSKIARQNGLTTSYFERLRGSKLY 674
HSP 2 Score: 531.176 bits (1367), Expect = 2.408e-171
Identity = 268/431 (62.18%), Postives = 324/431 (75.17%), Query Frame = 0
Query: 822 TKSTYNIVEEGSTPLYEIPEDIKTLIKRDIVPPVLKKPLSPQTYKDYFAALLYAEDYYLEKWDGFEMKDVTLRLHEAEIYERKGKYKQSSGV-KKDDKIFVEFEISAIPEKRPFLLSRDFASVRPSGRNIDPFQGIIFRVVKSNIVLVEFGDDFHAQHYSSCKYDVKFSFNRVCLKRAHQSIASASDMLFKKFLFP-NCQPKYSSHYS--------------TAITRIINITDSHPYLLEGSLSITRNNQLSGTGTLVRDTVVQLCQTSSLNRVLICAPLNSTCDVFMRSLQREFSDSEIFRANAAFREVDGVPDDILPFCPYKQKEEVFTCPSLPQLLKFKVILSTFMSSFRLHSNGIEGGHFTHVILVDASSATEPEIMVPLTNLTSVSTKVLVTGSPGNQSRWVRSDIARHNGLRTSYFERLRKSNFY 1236
KS Y V++ S+PLY IPEDIK LI++DIVP VLKK LS TYKDYFAALLYAEDYY EKW+GFEMK+VTL L +A IY RKGKYK + KKD+K+FV FEI +IPE+RPFLLSRDFA VRPSGR +DPF+GII+RVVKSN+VLVEFGDDFH+QHYS+CKYDV FSFNRVCLKRAHQ+IA+ASD LF+ FLFP C + S S +A+ +I+++ PYL++G +SI +LS TG +VR+ V+Q+ +T R+LICAP+NSTCDV M SL+ + +S++FRANAAFRE VPDDILP C Y+ E F+CPSL +L KFKVI STFMSSFRLH+ GI GHF+H+ LVDAS A EPE +VPL NL T +++TG+ GN RWVRS IAR NGL TSYFERLR S Y
Sbjct: 247 AKSNYIQVDKESSPLYVIPEDIKGLIEKDIVPGVLKKSLSQSTYKDYFAALLYAEDYYFEKWNGFEMKNVTLELQDAAIYRRKGKYKNLNKFDKKDEKMFVAFEIDSIPERRPFLLSRDFAFVRPSGREVDPFKGIIYRVVKSNLVLVEFGDDFHSQHYSACKYDVNFSFNRVCLKRAHQAIAAASDPLFRNFLFPAGCVARNSCTASQLVSIDRNLDMEKASAVRQILSLQGPPPYLVDGPISII-TRELSRTGMVVREAVLQIYRTFPKCRILICAPMNSTCDVLMMSLKEDIPESDMFRANAAFREFYEVPDDILPSCLYEG--ECFSCPSLQKLKKFKVIFSTFMSSFRLHNEGIMAGHFSHIFLVDASFAMEPETIVPLANLADERTPLVITGTTGNGPRWVRSKIARQNGLTTSYFERLRGSKLY 674
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PGL3 | E-Value: 0.000e+0, PID: 64.57 | (RNA helicase SDE3 {ECO:0000313|EMBL:PSR91002.1})[more] |
| A0A5B6ZGX7 | E-Value: 0.000e+0, PID: 64.98 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A5B6ZEX6 | E-Value: 0.000e+0, PID: 64.50 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA4... [more] |
| A0A5B7B2P6 | E-Value: 0.000e+0, PID: 66.59 | (Putative RNA helicase SDE3 {ECO:0000313|EMBL:MPA6... [more] |
| A0A834LRJ3 | E-Value: 2.465e-177, PID: 63.46 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7145... [more] |
| A0A6P6V0P3 | E-Value: 1.624e-172, PID: 61.99 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A068U9J3 | E-Value: 9.709e-172, PID: 61.99 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0486... [more] |
| A0A6P6VC28 | E-Value: 3.631e-173, PID: 59.71 | (probable RNA helicase SDE3 {ECO:0000313|RefSeq:XP... [more] |
| A0A834H3A4 | E-Value: 0.000e+0, PID: 55.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7145... [more] |
| A0A5J5BGT7 | E-Value: 2.408e-171, PID: 65.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8541... [more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |