Resource Type:
Polypeptide
Name:
DCAR_026274
Identifier:
DCAR_026274.mRNA-protein
Sequence:
MASASPSPDSTPAAIPPAVSPPSNASVTSPPPSFTQTEQTSDTPAPTGSL
TQPNSTSPPPQSTPAPPVSTSPPPSNPIATPPPSSPPPLPPTSSPPPKPA
SPPPLLPAAPPASTVTPTPPSSSPPPPSGTPPPQESPAPPASNPPPPLPV
TPAPPPAEIKSPPSADPPPAPLTEPPANSPPPPSPVTPSNSPPAPTTPSE
SSPPPVPLSLPPPGPPSNSSINGSSPSSPLPTFPTEKPTARSGNPGSDTT
ATSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGG
YVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQY
FTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQG
EREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHD
EGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFD
AQVADFGLAKLALDANTHVTTRVMGTFGYYLFSYWGKGIQARPLLTQALD
KQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALD
SMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQS
QSSWKS*
Sequence Length:
657
Sequence Checksum:
c5b9038cf81370c548172a879905aa6b
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026274, derives from mRNA, DCAR_026274. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C0Y8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 335/460 (72.83%), Postives = 376/460 (81.74%), Query Frame = 0
Match: A0A5J5C0Y8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 335/460 (72.83%), Postives = 376/460 (81.74%), Query Frame = 0
Query: 235 TEKPTARSGNPGSDTTATSGSGD-GGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSYWGKGIQ----------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
T +PTARS G + T+ + S D GG+KTGGAVAIGII GF+ALSL+VMAVWFTR++K+ S GGY+MPSP+ASSQNSD+SFLRPQ S H AGSASG+N MYSP+ GGVGNS+ +FTYEEL++AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV N+TLHYHLH EGR VMDWATR KVAAGAARG+AYLHEDCHPRIIHRDIKSSNILLD NF+AQVADFGLAKLALDANTHVTTRVMGTFGY +FS+ ++ ARPLL QAL+ +D E+VDPRLE+N+VE+E+FRMIEAAAACVRHLA+KRPRMSQVVRALDS+ EFSDLTNG+KPGQSEI+DSRQ SA+IR+FQRMAFGSQDYSS+ FN SQSSW+S
Sbjct: 222 TAEPTARSTTSGPNITSNAASKDAGGIKTGGAVAIGIIFGFLALSLVVMAVWFTRKRKKNRPGSNGGYIMPSPYASSQNSDSSFLRPQNSAHLAGSASGSNLMYSPEPGGVGNSKSWFTYEELAEATNGFSAQNLLGEGGFGCVYKGFLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHVEGRPVMDWATRAKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELITGRKPVDASRPLGDESLVEWARPLLNQALENEDIEELVDPRLERNFVENEMFRMIEAAAACVRHLASKRPRMSQVVRALDSISEFSDLTNGMKPGQSEIFDSRQHSAQIRMFQRMAFGSQDYSSDFFNHSQSSWRS 681
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A3W8 ((Putative proline-rich receptor-like protein kinase PERK8 {ECO:0000313|EMBL:MPA50376.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA50376.1}))
HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 344/482 (71.37%), Postives = 388/482 (80.50%), Query Frame = 0
Match: A0A5B7A3W8 ((Putative proline-rich receptor-like protein kinase PERK8 {ECO:0000313|EMBL:MPA50376.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA50376.1}))
HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 344/482 (71.37%), Postives = 388/482 (80.50%), Query Frame = 0
Query: 218 NSSINGSSPSSPLPTFPTEKPTARSGNPGSDTTATSGSGDGG-MKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSY---------------------------WGKGIQARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
NSS G+ P+SP P+FPT+KPTA+S + T+ + S DGG +KTGGAVAIGII G +A+SL+VMAVWFTR++K+ + S GGY+M SPFASSQNSD+SFLRPQ S H AGSASG+NFMYSP+ GVGNSR +FTY ELS+AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV N+TLHYHLH EGR VMDWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNIL+D NF+AQVADFGLAKLALDANTHVTTRVMGTFGY +FS+ W ARPLLT+ALD +DF E+VDPRLEKN+VE+E+FRMIEAAAACVRHL +KRPRMSQVVRALDS+ EFSDLTNG+KPGQSE++DSR+ SA+IR+FQRMAFGSQDYSS+ FN SQSSW+S
Sbjct: 187 NSSARGTPPTSPSPSFPTQKPTAKSTTSAPNITSNAISKDGGGLKTGGAVAIGIIFGVLAVSLVVMAVWFTRKRKKSGARSNGGYIMHSPFASSQNSDSSFLRPQNSAHLAGSASGSNFMYSPESSGVGNSRSWFTYGELSEATNGFSPQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHSEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILVDNNFEAQVADFGLAKLALDANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELITARKPVDASQPLGDESLVEW-----ARPLLTRALDNEDFEELVDPRLEKNFVENEMFRMIEAAAACVRHLGSKRPRMSQVVRALDSIGEFSDLTNGMKPGQSEVFDSREHSAQIRMFQRMAFGSQDYSSDFFNHSQSSWRS 663
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7IAZ8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0
Identity = 336/477 (70.44%), Postives = 379/477 (79.45%), Query Frame = 0
Match: A0A7J7IAZ8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0
Identity = 336/477 (70.44%), Postives = 379/477 (79.45%), Query Frame = 0
Query: 218 NSSINGSSPSSPLPTFPTEKPTARSGNPGSDTTA-TSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYYLFSYWGKGI-------------------------------------QARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
NSS++ + P SPLP+ PT+KPTARS PGS A T +G G K GG +AIGIIVG +ALSL+VM VWFTR++KRR + GGY+M SPFASSQ+SD+SFLRP S+H A SASG+NFMYSP+ GGVGNS+ +FTYEELS+AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYD+V N+TLHYHL+ EGR VMDWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNILLD NF+AQVADFGLAKLA DANTHVTTRVMGTFGY Y G ARPLL QAL+ + F E+ DPRLE NYVE E+FRMIEAAAAC+RHLA+KRPRMSQVVRALDS+ EF+DLTNG+KPGQSEI++SR+QSA+IR+FQRMAFGSQ+YSSE F+ SQSSW+S
Sbjct: 239 NSSVSTTPPISPLPSLPTQKPTARSTTPGSGAGANTISTGSGSNKAGGTMAIGIIVGLLALSLVVMGVWFTRKRKRRATGLNGGYIMSSPFASSQHSDSSFLRPPNSVHVAQSASGSNFMYSPEPGGVGNSKSWFTYEELSEATNGFSAQNLLGEGGFGCVYKGFLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDFVPNDTLHYHLYGEGRAVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDKNFEAQVADFGLAKLAADANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLNQALESERFEELADPRLENNYVETEMFRMIEAAAACIRHLASKRPRMSQVVRALDSIGEFTDLTNGMKPGQSEIFNSREQSAQIRMFQRMAFGSQEYSSEFFDHSQSSWRS 715
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DW26 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 336/477 (70.44%), Postives = 377/477 (79.04%), Query Frame = 0
Match: A0A4S4DW26 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 336/477 (70.44%), Postives = 377/477 (79.04%), Query Frame = 0
Query: 218 NSSINGSSPSSPLPTFPTEKPTARSGNPGSDTTA-TSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYYLFSYWGKGI-------------------------------------QARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
NSS++ P SPLP+ PT+KPTARS PGS A T +G G K GG +AIGIIVG +ALSL+VM VWFTR++KRR + GGY+M SPFASSQ+SD+SFLRP S+H A SASG+NFMYSP+ GGVGNS+ +FTYEELS AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYD+V N+TLHYHL+ EGR VMDWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNILLD NF+AQVADFGLAKLA DANTHVTTRVMGTFGY Y G ARPLL QAL+ + F E+ DPRLE NYVE E+FRMIEAAAAC+RHLA+KRPRMSQVVRALDS+ EF+DLTNG+KPGQSEI++SR+QSA+IR+FQRMAFGSQ+YSSE F+ SQSSW+S
Sbjct: 235 NSSVSTIPPISPLPSLPTQKPTARSTTPGSGAGANTISTGSGSNKAGGTMAIGIIVGLLALSLVVMGVWFTRKRKRRATGLNGGYIMSSPFASSQHSDSSFLRPPNSVHVAQSASGSNFMYSPEPGGVGNSKSWFTYEELSKATNGFSAQNLLGEGGFGCVYKGFLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDFVPNDTLHYHLYGEGRAVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDKNFEAQVADFGLAKLAADANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLNQALESERFEELADPRLENNYVETEMFRMIEAAAACIRHLASKRPRMSQVVRALDSIGEFTDLTNGMKPGQSEIFNSREQSAQIRMFQRMAFGSQEYSSEFFDHSQSSWRS 711
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A179 ((Putative proline-rich receptor-like protein kinase PERK8 {ECO:0000313|EMBL:MPA50377.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA50377.1}))
HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 329/472 (69.70%), Postives = 371/472 (78.60%), Query Frame = 0
Match: A0A5B7A179 ((Putative proline-rich receptor-like protein kinase PERK8 {ECO:0000313|EMBL:MPA50377.1}) (2.7.11.1 {ECO:0000313|EMBL:MPA50377.1}))
HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 329/472 (69.70%), Postives = 371/472 (78.60%), Query Frame = 0
Query: 223 GSSPSSPLPTFPTEKPTARSGNPGSDTTATSGSGDG-GMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSYWGKGIQ----------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
G+ P+SPLP+FPTEKPTARS PG + + + S DG G+KTGGAVAIGIIVG +ALSL+VMAVWFTR++K+R + S GGY+MPSPFAS QNSD+SFLRPQ S H AGSASG+NFMYSP+ GVGNSR +FTY ELS+AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV N+TLHYHLH EGR VMDWATRVKVAAGAARG+AYLHED F+AQVADFGLAKLALDANTHVTTRVMGTFGY +FS+ ++ ARPLLT+ALD +DF E+VDPRLEKN+VE+E+FRMIEAAAACVRHL +KRPRMSQVVRALDS+ EFSDLTNG+KPGQSE++DSR+ SA+IR+FQRMAFGSQDYSS+ FN SQSSW+S
Sbjct: 231 GTPPTSPLPSFPTEKPTARSTMPGPNIPSNATSKDGEGIKTGGAVAIGIIVGVLALSLVVMAVWFTRKRKKRGAGSNGGYIMPSPFASPQNSDSSFLRPQNSAHLAGSASGSNFMYSPESSGVGNSRSWFTYGELSEATNGFSPQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHSEGRPVMDWATRVKVAAGAARGIAYLHED--------------------FEAQVADFGLAKLALDANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELITARKPVDASQPLGDESLVEWARPLLTRALDNEDFEELVDPRLEKNFVENEMFRMIEAAAACVRHLGSKRPRMSQVVRALDSIGEFSDLTNGMKPGQSEVFDSREHSAQIRMFQRMAFGSQDYSSDFFNHSQSSWRS 682
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ALK8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 659.833 bits (1701), Expect = 0.000e+0
Identity = 334/459 (72.77%), Postives = 371/459 (80.83%), Query Frame = 0
Match: A0A5J5ALK8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 659.833 bits (1701), Expect = 0.000e+0
Identity = 334/459 (72.77%), Postives = 371/459 (80.83%), Query Frame = 0
Query: 236 EKPTARSGNPGSDTTATSGSGDGG-MKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSYWGKGIQ----------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
EKPTA+S PG + S D G +KTGGAVAIGI+VGF+ LSL+V+AVWFTR++K+ + S GGY MPSPFAS QNSD+S LRPQ S H GSASGNNFMYS + GGVGNSR +FTYEEL +AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV NNTLHYHLH EGR VMDWATRVKV+AGAARG+AYLHEDCHPRIIHRDIKSSNILLD NF+AQVADFGLAKLALDANTHVTTRVMGTFGY +FS+ ++ ARPLL +ALD DF E+VDPRLEKN+VE+E+FRMIEAAAACVRHLA+KRPRMSQVVRALDS+ EFSDLTNG+KPGQSE++DSR+QSA+IR+FQRMAFGSQDYSS+ FN SQSSW+S
Sbjct: 224 EKPTAKSNMPGPSIPSNVTSKDAGEIKTGGAVAIGIVVGFLVLSLVVVAVWFTRKRKKSEARSNGGYTMPSPFASPQNSDSSLLRPQNSAHLVGSASGNNFMYSSEPGGVGNSRSWFTYEELIEATSGFSPQNLLGEGGFGCVYKGFLLDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHSEGRPVMDWATRVKVSAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVADFGLAKLALDANTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELVTGRKPVDASQPLGDESLVEWARPLLARALDDVDFEELVDPRLEKNFVENEMFRMIEAAAACVRHLASKRPRMSQVVRALDSIGEFSDLTNGMKPGQSEVFDSREQSAQIRMFQRMAFGSQDYSSDFFNHSQSSWRS 682
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3YXW4 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_015868937.1}))
HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 320/467 (68.52%), Postives = 363/467 (77.73%), Query Frame = 0
Match: A0A6P3YXW4 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_015868937.1}))
HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 320/467 (68.52%), Postives = 363/467 (77.73%), Query Frame = 0
Query: 228 SPLPTFPTEKPTARSGNPGSDTTATSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQ-GGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYYL--FSYWGKGIQ-----------------------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
SP PT PT+KPTA+S + T +S G GG+ TGGAVAIGI VGFV LSLL+MAVWF +++K++ + G+ MPSPFASSQNS++ FLRP R S SG++FMYSP + GGV NS+ +FTYE+L AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV NNTLHYHLH EGR VMDWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNILL+ NFDA+V+DFGLAKLALD+NTHVTTRVMGTFGY ++ GK + ARPLL QALD DF E+ DPRLEKNY+E+E+FRMIEAAAACVRH A KRPRM QVVRALDS+ + SDL+NG+KPGQSE++DS QQSA+IR+FQRMAFGSQDYS+E FNQS SSW+S
Sbjct: 277 SPFPTIPTQKPTAKSTTNTNMTANSSSKGSGGLNTGGAVAIGIAVGFVVLSLLLMAVWFVQKQKKK-RNKANGFGMPSPFASSQNSESLFLRPHSPAPRVASGSGSDFMYSPSEPGGVNNSKAWFTYEDLLQATDGFSTLNLLGEGGFGCVYKGILADGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLENNFDARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPVGDESLVEWARPLLAQALDNGDFEELADPRLEKNYLENEMFRMIEAAAACVRHSAVKRPRMGQVVRALDSLDDISDLSNGMKPGQSEVFDSAQQSAQIRMFQRMAFGSQDYSTEYFNQSHSSWRS 742
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3YXV1 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_015868804.1}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 320/467 (68.52%), Postives = 363/467 (77.73%), Query Frame = 0
Match: A0A6P3YXV1 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_015868804.1}))
HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 320/467 (68.52%), Postives = 363/467 (77.73%), Query Frame = 0
Query: 228 SPLPTFPTEKPTARSGNPGSDTTATSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQ-GGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYYL--FSYWGKGIQ-----------------------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
SP PT PT+KPTA+S + T +S G GG+ TGGAVAIGI VGFV LSLL+MAVWF +++K++ + G+ MPSPFASSQNS++ FLRP R S SG++FMYSP + GGV NS+ +FTYE+L AT GFS NLLGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLVSLVGYCISEHQRLLVYDYV NNTLHYHLH EGR VMDWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNILL+ NFDA+V+DFGLAKLALD+NTHVTTRVMGTFGY ++ GK + ARPLL QALD DF E+ DPRLEKNY+E+E+FRMIEAAAACVRH A KRPRM QVVRALDS+ + SDL+NG+KPGQSE++DS QQSA+IR+FQRMAFGSQDYS+E FNQS SSW+S
Sbjct: 84 SPFPTIPTQKPTAKSTTNTNMTANSSSKGSGGLNTGGAVAIGIAVGFVVLSLLLMAVWFVQKQKKK-RNKANGFGMPSPFASSQNSESLFLRPHSPAPRVASGSGSDFMYSPSEPGGVNNSKAWFTYEDLLQATDGFSTLNLLGEGGFGCVYKGILADGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGEGRPVMDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLENNFDARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPVGDESLVEWARPLLAQALDNGDFEELADPRLEKNYLENEMFRMIEAAAACVRHSAVKRPRMGQVVRALDSLDDISDLSNGMKPGQSEVFDSAQQSAQIRMFQRMAFGSQDYSTEYFNQSHSSWRS 549
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P9Z6 ((Proline-rich receptor-like protein kinase {ECO:0000313|EMBL:PSR87800.1}))
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 324/472 (68.64%), Postives = 370/472 (78.39%), Query Frame = 0
Match: A0A2R6P9Z6 ((Proline-rich receptor-like protein kinase {ECO:0000313|EMBL:PSR87800.1}))
HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 324/472 (68.64%), Postives = 370/472 (78.39%), Query Frame = 0
Query: 223 GSSPSSPLPTFPTEKPTARSGNPGSDTTATSGSGDGGMKTGG-AVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYVMPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSPDQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSYWGKGIQ----------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
G+ P S LP+ PTEKPTA SG + A S S DGG G +AIGI+ G + LSL+VMAVW R++KR ++ GGYVMPSPFASSQNSD+SFLRPQ S AGSASG+NFMYSP+ GGVGNSR +FTYEEL+DAT+GFS +LGEGGFGCVYKG L DGR VAVKQLKIGGGQGEREFRAEVEII RVHHRHLV+LVGYCIS+HQRLLVY+Y+ NNTLHYHLH EGR VM+WATRV+VAAGAARG+AYLHEDCHPRIIHRDIKSSNILLD NF+A+VADFGLAKLA D NTHVTTRVMGTFGY +FS+ ++ ARPLL QAL+ + F E+VDPRLEK Y+E E+FRMIEAAA C+RHLA+KRPRMSQVVRALDSM E SDLTNG++PGQSEI+DSRQQSA+IR+FQRMAFGSQDYSS F++S SSW+S
Sbjct: 237 GTPPISSLPSLPTEKPTATSG-----SNANSTSNDGGGIGPGGTMAIGIVFGVLVLSLVVMAVWLMRKRKRGGTELGGGYVMPSPFASSQNSDSSFLRPQNSGQLAGSASGSNFMYSPEAGGVGNSRSWFTYEELADATHGFSADKILGEGGFGCVYKGYLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVTLVGYCISDHQRLLVYEYIPNNTLHYHLHGEGRPVMEWATRVRVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEARVADFGLAKLAGDTNTHVTTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVVLLELITGRKPVDGSQPLGDESLVEWARPLLAQALETEKFDELVDPRLEKTYLETEMFRMIEAAAVCIRHLASKRPRMSQVVRALDSMGELSDLTNGMRPGQSEIFDSRQQSAQIRMFQRMAFGSQDYSSGYFDRSHSSWRS 703
BLAST of DCAR_026274 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218VVW6 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_031395862.1}))
HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 320/468 (68.38%), Postives = 364/468 (77.78%), Query Frame = 0
Match: A0A218VVW6 ((proline-rich receptor-like protein kinase PERK8 {ECO:0000313|RefSeq:XP_031395862.1}))
HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 320/468 (68.38%), Postives = 364/468 (77.78%), Query Frame = 0
Query: 229 PLPTFPTEKPTARSGNPGSDTTATSGSGDGGMKTGGAVAIGIIVGFVALSLLVMAVWFTRRKKRRISDSIGGYV--MPSPFASSQNSDTSFLRPQQSIHRAGSASGNNFMYSP-DQGGVGNSRQYFTYEELSDATYGFSNSNLLGEGGFGCVYKGCLPDGRVVAVKQLKIGGGQGEREFRAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVANNTLHYHLHDEGRQVMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDFNFDAQVADFGLAKLALDANTHVTTRVMGTFGYY---------------LFSYWGKGIQ----------------------ARPLLTQALDKQDFAEIVDPRLEKNYVEHEVFRMIEAAAACVRHLATKRPRMSQVVRALDSMLEFSDLTNGVKPGQSEIYDSRQQSAEIRLFQRMAFGSQDYSSEIFNQSQSSWKS 656
PLP+ PTEKPTARS N DTT + S GG+KTGGAVAIGI+VGFV LSLLVMAVWF +R+KR+ S GY MPSPFASSQNS++ FLR + AGSASG+NFMYSP +QG + NSR +FTYEEL AT GFS+ N+LGEGGFGCVYKG L DGR VAVKQLKIG GQGEREFRAEVEII RVHHRHLVSLVGYCI E RLLVYDYV NNTLHYHLH E + V+DWATRVKVAAGAARG+AYLHEDCHPRIIHRDIKSSNILLD NFDAQV+DFGLAKLALD+NTHVTTRVMGTFGY ++S+ ++ AR LL QAL+ ++F +VD +LE NYV E+FRMIEAAAACVRH ATKRPRMSQVVRALDS+ E SDL+NG++PGQSEI++SR+QSA+IR+F+RMAFGSQDYSSE FN +QSSW+S
Sbjct: 239 PLPSIPTEKPTARSTN---DTTVNANSTAGGLKTGGAVAIGIVVGFVVLSLLVMAVWFMQRRKRKNKQSNIGYKFNMPSPFASSQNSESVFLRSHSPVVLAGSASGSNFMYSPSEQGAINNSRSWFTYEELLHATDGFSSLNILGEGGFGCVYKGVLADGREVAVKQLKIGSGQGEREFRAEVEIISRVHHRHLVSLVGYCIVEQHRLLVYDYVPNNTLHYHLHGERQPVLDWATRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFDAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARLLLAQALEDENFEGVVDLKLENNYVASELFRMIEAAAACVRHSATKRPRMSQVVRALDSLDELSDLSNGMRPGQSEIFNSREQSAQIRMFRRMAFGSQDYSSEFFNHTQSSWRS 703
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C0Y8 | E-Value: 0.000e+0, PID: 72.83 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7A3W8 | E-Value: 0.000e+0, PID: 71.37 | (Putative proline-rich receptor-like protein kinas... [more] |
| A0A7J7IAZ8 | E-Value: 0.000e+0, PID: 70.44 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4S4DW26 | E-Value: 0.000e+0, PID: 70.44 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7A179 | E-Value: 0.000e+0, PID: 69.70 | (Putative proline-rich receptor-like protein kinas... [more] |
| A0A5J5ALK8 | E-Value: 0.000e+0, PID: 72.77 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6P3YXW4 | E-Value: 0.000e+0, PID: 68.52 | (proline-rich receptor-like protein kinase PERK8 {... [more] |
| A0A6P3YXV1 | E-Value: 0.000e+0, PID: 68.52 | (proline-rich receptor-like protein kinase PERK8 {... [more] |
| A0A2R6P9Z6 | E-Value: 0.000e+0, PID: 68.64 | (Proline-rich receptor-like protein kinase {ECO:00... [more] |
| A0A218VVW6 | E-Value: 0.000e+0, PID: 68.38 | (proline-rich receptor-like protein kinase PERK8 {... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |