Resource Type:
Polypeptide
Name:
DCAR_023329
Identifier:
DCAR_023329.mRNA-protein
Sequence:
MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRR
EGLQANQFPQAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLS
IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQAVWALGNVAGDSPRCRDL
VLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALP
ALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLH
PSPSVLIPALRTVGNIVTGDDVQTQAVILAGLFGPLVNLLQNAEFDIKKE
AAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLEN
ILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVK
ILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYFLCGEGCRSKQ
GLVWRRVRSGPVRLGQVGSKHHIVSCCHLTQLLLWLKMSRGRSRFNRTW*
Sequence Length:
500
Sequence Checksum:
d2959decd15246f781799626dbc21401
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_023329, derives from mRNA, DCAR_023329. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PVV0 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 386/487 (79.26%), Postives = 412/487 (84.60%), Query Frame = 0
Match: A0A2R6PVV0 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 766.148 bits (1977), Expect = 0.000e+0
Identity = 386/487 (79.26%), Postives = 412/487 (84.60%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQA QF QA VEKKL ES+P MVAGVWS+++N+QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ AVWALGNVAGDSPRCRDLVL+ GAL PLL+QLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQ+LVHS DEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSP+VLIPALRTVGNIVTGDDV AVI AGL PLV+LLQ AEFDIKKEAAWAISNATSGG+HDQIK+LV Q CIKPLCDLL+CPDPRI+TVCLEGLENILKVGE EKNLGN+G++NYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG Q GFN GG+D LPSGG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFAPNLQASTVEKKL--ESLPAMVAGVWSNETNVQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQQLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPTVLIPALRTVGNIVTGDDV---AVIEAGLISPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVGQGCIKPLCDLLICPDPRIITVCLEGLENILKVGEGEKNLGNTGDINYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGGSDVQLPSGGFNF 482
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AC24 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 398/530 (75.09%), Postives = 416/530 (78.49%), Query Frame = 0
Match: A0A5J5AC24 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 398/530 (75.09%), Postives = 416/530 (78.49%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDADEGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP VEKKL ES+P MVAGVWSD+SN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRF+EFLMRED+PQLQ AVWALGNVAGDSPRCRDLVL GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQ+LVHSNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT QAVI AGL GPLVNLLQ AEFDIKKEAAWAISNATSGG+HDQIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN+YAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWL EEDETLP+GDG+Q GFN GG D LPSGG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPADIHTSTVEKKL--ESLPSMVAGVWSDNSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIIDHGALPCLLSLLSHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIGPLVNLLQIAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL-EEDETLPSGDGSQPGFNFGGNDVQLPSGGFNF 527
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GPX7 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 392/531 (73.82%), Postives = 416/531 (78.34%), Query Frame = 0
Match: A0A7J7GPX7 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 392/531 (73.82%), Postives = 416/531 (78.34%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYFL 441
MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP A VEKKL ES+P +VAGVWS+DSN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQ AVWALGNVAGDSPRCRDLVL +GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+QT+PALPALQRL+HS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT QAVI AGL PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV Q CIKPLCDLLVCPDPRI+TVCLEGLENILKVGE EKNLGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG Q GFN GG D +PSGG F+
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPSNIHASTVEKKL--ESLPSLVAGVWSNDSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLCNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQTKPALPALQRLIHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQSIIEHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEVEKNLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGPQPGFNFGGNDVQVPSGGFNFV 529
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EIK9 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 392/530 (73.96%), Postives = 415/530 (78.30%), Query Frame = 0
Match: A0A4S4EIK9 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 392/530 (73.96%), Postives = 415/530 (78.30%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQA QFP A VEKKL ES+P +VAGVWS+DSN+QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQ AVWALGNVAGDSPRCRDLVL +GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+QT+PALPALQRL+HS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT QAVI AGL PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV Q CIKPLCDLLVCPDPRI+TVCLEGLENILKVGE EKNLGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG Q GFN GG D +PSGG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQFPSNIHASTVEKKL--ESLPSLVAGVWSNDSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQTKPALPALQRLIHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQSIIEHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEVEKNLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGPQPGFNFGGNDVQVPSGGFNF 528
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A151SSU3 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 755.747 bits (1950), Expect = 0.000e+0
Identity = 382/487 (78.44%), Postives = 411/487 (84.39%), Query Frame = 0
Match: A0A151SSU3 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 755.747 bits (1950), Expect = 0.000e+0
Identity = 382/487 (78.44%), Postives = 411/487 (84.39%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRPNARTEVRRNRYKVAVDADEGRRRREDN++EIRK+KREESLLKKRREGLQ QFP Q V+KKL ES+P MV GVWSDD+++QLEATT FRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ AVWALGNVAGDSPRCRDLVL++GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLV SNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLV+LL+HPSPSVLIPALRTVGNIVTGDD+QTQAVI A L PLVNLLQNAEFDIKKEAAWAISNATSGG+HDQIK+LV Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK+LGN+G+VN YAQ+ID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLE+EDETLP+GDG QAGFN G + +PSGG F
Sbjct: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNLVEIRKSKREESLLKKRREGLQ--QFPAPLQNSTVDKKL--ESLPAMVTGVWSDDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQAVIEAALIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQAGFNFGSNELPVPSGGFNF 483
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C9T2 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 392/530 (73.96%), Postives = 415/530 (78.30%), Query Frame = 0
Match: A0A5B7C9T2 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 754.207 bits (1946), Expect = 0.000e+0
Identity = 392/530 (73.96%), Postives = 415/530 (78.30%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESLLKKRREGLQ QFP A VEKKL ES+P MVAGVWSD+SN+QL+ATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ AVWALGNVAGDSPRCRDLVL GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQ+LVHSNDEEVLTDACWALSYLSDGTNDKIQAVI+AGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT QAVI AGL PLVNLLQ AEFDIKKEAAWAISNATSGG+++QIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN+YAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEE+ETLP+GDG+Q GFN G D LPSGG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQVQQFPADIHASTVEKKL--ESLPSMVAGVWSDNSNLQLDATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLNHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQCIIDHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTNEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEENETLPSGDGSQPGFNFGRNDIQLPSGGFNF 528
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RZK9 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 753.436 bits (1944), Expect = 0.000e+0
Identity = 379/489 (77.51%), Postives = 410/489 (83.84%), Query Frame = 0
Match: B9RZK9 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 753.436 bits (1944), Expect = 0.000e+0
Identity = 379/489 (77.51%), Postives = 410/489 (83.84%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQA-----PVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDADEGRRRREDNM+EIRKNKREE+L KKRREGLQA QFP A +EKKL ES+P MVAGVWSDD ++QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ AVWALGNVAGDSP+CRDLVL++GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLVHS D+EVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLH SPSVL+PALRTVGNIVTGDD+QTQAVI + L PLVNLLQNAEFDIKKEAAWAISNATSGG+H+QIK++V+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN YAQLID+AEGLEKIENLQSHDNNEIYEKAVK+LETYWLEE+DETLP GD +Q GF+ GG D + P+GG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLQAQQFPAAVNLTSSNMEKKL--ESLPAMVAGVWSDDKSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLSNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHSSPSVLVPALRTVGNIVTGDDLQTQAVIESELIVPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYMVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNLYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKVLETYWLEEDDETLPPGDNSQQGFHFGGNDPSAPAGGFNF 487
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SY66 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 747.658 bits (1929), Expect = 0.000e+0
Identity = 385/530 (72.64%), Postives = 413/530 (77.92%), Query Frame = 0
Match: D7SY66 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 747.658 bits (1929), Expect = 0.000e+0
Identity = 385/530 (72.64%), Postives = 413/530 (77.92%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFP---QAPVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP+ARTEVRRNRYKVAVDA+EGRRRREDNM+EIRK+KREESL KKRREGLQA QFP A VEKKL ES+P MVAGVWSD+S++QLEATT FRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQ AVWALGNVAGDSPRCRDLVL GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF+Q +PALPAL+RLVHS+DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVLIPALRTVGNIVTGDD+QT QAVI AG+ PLV+LLQ AEFDIKKEAAWAISNATSGG+H+QIK+LV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK LGNSG+VNYYAQLID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLP+GDG+Q GF GG D ++PSGG F
Sbjct: 1 MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHASTVEKKL--ESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNF 528
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835MT66 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9677962.1}))
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 380/529 (71.83%), Postives = 411/529 (77.69%), Query Frame = 0
Match: A0A835MT66 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9677962.1}))
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 380/529 (71.83%), Postives = 411/529 (77.69%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQAPVVEKKLQ--LESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQ-------------------------------------------AVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRP++RT+VRRNRYKVAVDADEGRRRREDNM+EIRKNKREESL KKRREGL A QFP A + ++ LES+P MVAGVWSDDSN+QLEATT FRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQ AVWALGNVAGDSP+CRDLVL+ GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPALPAL+RLVHS DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVL+PALRTVGNIVTGDD+QTQ AVI AGL GPL+NLLQNAEFDIKKEAAWA+SNATSGG+H+QIKFLV+Q CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVN+YAQ+ID+AEGLEKIENLQSHDNNEIYEKAVKILETYWLEE+DE LP+GDG Q GF+ G + +PSGG F
Sbjct: 1 MSLRPSSRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPAAVISSSNMENKLESLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCLRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIKAVIEAGLIGPLINLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDEALPSGDGAQQGFHFGENNVQVPSGGFNF 529
BLAST of DCAR_023329 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067JV78 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 383/530 (72.26%), Postives = 411/530 (77.55%), Query Frame = 0
Match: A0A067JV78 (Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005673})
HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 383/530 (72.26%), Postives = 411/530 (77.55%), Query Frame = 0
Query: 1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMIEIRKNKREESLLKKRREGLQANQFPQ---APVVEKKLQLESIPGMVAGVWSDDSNMQLEATTHFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ--------------------------------------------AVWALGNVAGDSPRCRDLVLASGALPPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQTRPALPALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCQRLVELLLHPSPSVLIPALRTVGNIVTGDDVQT-------------------------------------------QAVILAGLFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKFLVNQSCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGEVNYYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPTGDGNQAGFNLGGADGNLPSGGAYF 440
MSLRPNARTE RRNRYKVAVDADEGRRRREDNM+EIRKNKREESL KKRREGLQA QFP + EKKL ES+P MVAGVWSDD+N+QLEATT FRKLLSIERSPPIEEVIQSGVVPRF+EFL+RED+PQLQ AVWALGNVAGDSP+CRDLVL+ GAL PLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ RPA+PAL+RLVHS DEEVLTDACWALSYLSDGTNDKIQAVI+AGVC RLVELLLHPSPSVL+PALRTVGNIVTGDD+QT QAVI AGL PLVNLLQNAEFDIKKEAAWAISNATSGG+++QIK+LV+Q C+KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSG+VN YAQLID+AEGLEKIENLQSHDN EIYEKAVK+LETYWLEE+DETLPTGDG Q GF+ GG D ++PSGG F
Sbjct: 1 MSLRPNARTEARRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQAQQFPATALSSAAEKKL--ESLPSMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFIEFLVREDFPQLQFEAAWALTNIASGTSEHTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPAIPALERLVHSADEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDIQTQCVISYGALPYLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTNEQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNMYAQLIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEDDETLPTGDGFQQGFHFGGKDPSVPSGGFNF 528
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PVV0 | E-Value: 0.000e+0, PID: 79.26 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A5J5AC24 | E-Value: 0.000e+0, PID: 75.09 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A7J7GPX7 | E-Value: 0.000e+0, PID: 73.82 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A4S4EIK9 | E-Value: 0.000e+0, PID: 73.96 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A151SSU3 | E-Value: 0.000e+0, PID: 78.44 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A5B7C9T2 | E-Value: 0.000e+0, PID: 73.96 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| B9RZK9 | E-Value: 0.000e+0, PID: 77.51 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| D7SY66 | E-Value: 0.000e+0, PID: 72.64 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
| A0A835MT66 | E-Value: 0.000e+0, PID: 71.83 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9677... [more] |
| A0A067JV78 | E-Value: 0.000e+0, PID: 72.26 | Importin subunit alpha {ECO:0000256|PIRNR:PIRNR005... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |