XM_017374485.1

Resource Type: 
Polypeptide
Name: 
XM_017374485.1
Identifier: 
XM_017374485.1-protein
Sequence: 
MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTED
SDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKP
EAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHC
GQCHCYVCDLLAPCLHWDGNHCHATDKEEYWKNERKSLKNRHQAAVSVPR
VYTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFAPGF
DHSGQVPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVF
KRTGGGPLLSNRRYCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQL
GPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVS
PPSSTANFFVSSVTEHQVPTQAYHYGNTFLRPPQSQLSLQPIVDNSYTNR
MPSEPLIYGQLNAAPNEYQNINLNQDHSFLGSTEEDIDLSCINLTSESNQ
EPTPQHQDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSWNLGSSD
KPVHSPEPDISDSSFFFGL
Sequence Length: 
569
Sequence Checksum: 
155bd90ed80baff514ebc4c034e137c8
View location in JBrowse: 
DCARv2_Chr1:479662..482557-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017374485.1, derives from mRNA, XM_017374485.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PEC0 ((Protein like {ECO:0000313|EMBL:PSR89725.1}))

HSP 1 Score: 307.375 bits (786), Expect = 3.872e-94
Identity = 236/642 (36.76%), Postives = 318/642 (49.53%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGL-KDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRV-YTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSGQ-------VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTGGGPL-LSNRR--YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQ-------------VPTQAY-----HYGNTF---------------------LRPPQSQLSLQPIVDNSYTNRMPSEPLIYGQLNAAPNEYQNINLNQDHSFLGSTE-EDIDLSCINLTSESNQEPTPQHQDIGLVTE---HEALPRTEQQDDLFGGSPNLDALNFQYDSWNLGSSDKP------------VHSPEPDISDSSFFFGL 569
            MD   VV D SSDE+   + +    + G DD DWI ELL++V R+      D+SDDVVLVSEVV +PK + K+S     KDL    DDDDCV+LD DPDKP  +ENN   D SD+L IV E GQ+ACRDYPHPRHLCAK+ F+ST HE+HC QCHCYVCD LAPC+HW       +HCHATDK E+WK +R++LK   +A + V ++  TS+S       Q P     +P Y    QV  P TIRACS S+N   P   + G        +PRN+F P LV Q L +T  + +  DRR++ GN    V S  ++FKR G   + L N R  Y  S   +  Q+   P       + N ++ Q    +       +Q P   NI + F NS+P   ++SS  +V +   N +PS+P VS  S+  + FV+S    Q             +P+Q +       G+ F                     L P Q Q++ QP + +S+ + +P +P +Y      P    N  L Q +    + E  D   S +  T +SNQ P      I L TE   H  L    Q      G     +L+FQYDSW L +                V+SPE    D+  FFG 
Sbjct:    1 MDSRPVVFDISSDEESWGETRGGVGECGGDDYDWISELLEKVHREM-----DDSDDVVLVSEVVPNPKPRSKSSSAAKEKDL----DDDDCVILDCDPDKPVVIENNDAGD-SDDLLIVGEKGQLACRDYPHPRHLCAKFPFSSTPHESHCHQCHCYVCDSLAPCVHWGNTTSSMDHCHATDKVEFWKLQRRNLKQGVRAPLPVLKLPDTSVSMAPQQTIQVPPPALLQPNYPAHNQVSRPTTIRACSTSSNLGFPNIRNQGGSQQSTYVIPRNKFGPQLVCQQLPTTHTNAIPGDRRNSVGNVGPHVNS-HAIFKRAGSAAVALPNNRSGYDSSKHNHVNQHSRNPSAS---NNKNLIKSQDFSSRTSTNSRAHQDPSHQNISSRFGNSVPSHHRVSSHQSVGSGFSNSVPSRPAVSSHSNLGSKFVNSAPSPQTSSHPSTGRNFDSLPSQPHVSSQPGIGSGFVNSVPSPQASYQPNMESNFENLAPSQQQVTSQPNMGSSFVHSVPYQPQVYSH----PIPVSNDGLQQGNETQNALELPDFSTSWVAPTGQSNQPPLVDGSQI-LCTELTYHPPLLFDPQSPITANGG----SLDFQYDSWVLDNQSVSGALEVSVPPGLNVYSPESAPVDAGLFFGF 619
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0H4F4 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFZ17644.1}))

HSP 1 Score: 304.294 bits (778), Expect = 6.074e-92
Identity = 220/564 (39.01%), Postives = 290/564 (51.42%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGL-KDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRV-YTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSGQ-------VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTGGGPL-LSNRR--YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQVPTQAYHYGNTFLRPPQSQLSLQPIVDNSYTNRMPSEPLIYGQLNAAPNEYQNINLNQDHSFLGSTEEDIDLSCINLTSESNQEPTPQHQDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSWNL 546
            MD   VV D SSDE+   + +    + G DD DWI ELL++V R+      D+SDDVVLVSEVV +PK + K+S     KDL    DDDDCV+LD DPDKP  +ENN   D SD+L IV E GQ+ACRDYPHPRHLCAK+ F+ST HE+HC QCHCYVCD LAPC+HW       +HCHATDK E+WK +R++LK   +A V V ++  TS+S       Q P     +P Y    QV  P TIRACS S+N   P   + G        +PRN+F P LV Q L +T  +++  DRR++ GN    V S  ++FKR G   + LSN R  Y LS   +  Q+   P       + N +R Q    +       +Q P   N  + F NS+P   ++SS  +V +   N +PSQ  VS  S+  + FV+S    Q  +      N    P Q  +  QP + + + N +PS    Y      PN   N              E++  S   +TS+ N         IG  T H  L    Q      G     +L+F YDSW L
Sbjct:    1 MDSRPVVFDISSDEESWGETRCGVGECGGDDYDWISELLEKVHREM-----DDSDDVVLVSEVVPNPKPRSKSSSAAKEKDL----DDDDCVILDCDPDKPVVIENNDAGD-SDDLLIVGEKGQLACRDYPHPRHLCAKFPFSSTPHESHCHQCHCYVCDSLAPCVHWGNTTSSMDHCHATDKVEFWKLQRRNLKQGDRAPVPVLKLPDTSVSMAPQQTIQVPPPAPLQPNYPAHNQVSRPTTIRACSSSSNLGFPNIRNQGGSQQSTYVIPRNKFGPQLVSQQLPTTHTNVIPGDRRNSVGNVGPHVNS-HAIFKRAGSAAVALSNNRSGYDLSKHNHVNQHSRNPSASN---NKNLIRSQDFSSRASTNSRAHQDPSHQNTSSRFGNSVPSHHRVSSHQSVGSGFSNSVPSQRAVSSHSNLGSKFVNSTPSPQASSHPSTGRNFDSLPLQPHVPSQPGIGSGFVNSVPSPQASY-----QPNMESNF-------------ENLAPSQQQVTSQPN---------IGKPTYHPPLLFDPQSPITANGG----SLDFHYDSWVL 519
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CCH7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77786.1}))

HSP 1 Score: 300.056 bits (767), Expect = 8.369e-92
Identity = 239/613 (38.99%), Postives = 329/613 (53.67%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCD---WIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRVY-TSLSAEMIPISQG-PVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSGQ-------VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTG--GGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQVPTQAYHYGNTFLR--PPQSQLSLQPIVDNSYTNRMPSEPLIYGQLNAAPNEYQNINLNQDHSFLGSTEEDIDLSCINLTSESNQEPTPQH---------QDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSWNLGSSDKP------------VHSPEPDISDSSFFFGL 569
            MDP+ VVLD SSDE+   +          D  D   WI ELL            D+SDDVV V EV ++ K +LK+     K  + +++DDDCVVLDGDPDKP A+EN+    E+DEL IV+E GQ+ACRDYPHPRHLCAK+ F+ST HE HC  CHCYVCD  APC+HW       +HCHATDKE  WK +R+ +K   ++  S+P++  TSLS  +  ++Q  PV++   P  +   QV  P TIRACS STN   P   + G+       VPRN+F+P+LV Q L ST N+ ++RDRRH+  ++  +  S  ++FKRTG    PL +NR  Y  SN  Y +QY    P +      N + WQ L+  +    + YQ   Q +  + F+NS+P QPQ+SS PN+ +N +N +  QP +S   +    FV+SV      +   + G+ F    P Q Q S Q  V + + N  PS+P +Y Q  ++ +  Q    NQ  S L  +  D D S +  TS+SNQ+P  ++          D  LVTE+         D  F GS N   L+F++D W L +   P            V SPE    D+   F L
Sbjct:    1 MDPKRVVLDISSDEEGWGETGGNGGGGDGDGDDIDYWISELL------------DDSDDVVCVGEVFLNHKQRLKSMSVVAKS-SAKDEDDDCVVLDGDPDKPVAIEND-TAGEADELLIVSEKGQIACRDYPHPRHLCAKFPFSSTPHERHCDMCHCYVCDSHAPCVHWGTGTSSIDHCHATDKEP-WKFQRRRIKRGDKSPPSIPKLPDTSLSTGLPQMNQVLPVTL---PNLLAQNQVSRPTTIRACSTSTNLGVPNVINQGRNERPGYVVPRNKFQPHLVSQQLPSTRNNNIRRDRRHSFVDSGPRCLS-SNMFKRTGSVAVPLTTNRSGYGSSNNNYGSQYSRDSPPIATSNDKNPIVWQGLYSGMTLGSDAYQSSSQQDTGSIFANSVPSQPQVSSQPNMGSNFVNPVLPQPQISSQPNMGRVFVNSVPLQPQVSPLPNLGSIFANSVPSQPQGSSQLNVGSIFANSAPSQPQVYSQPISSQDGCQ--QGNQTQSALDPSISDFDPSWVTPTSQSNQQPLVENFQLQSAGPTYDPSLVTEY---------DPQFPGSTNPGPLDFEFD-WMLENQSLPGSLEVSVAPGLNVLSPEHAHIDAGILFDL 582
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HAQ6 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ20183.1}))

HSP 1 Score: 295.049 bits (754), Expect = 4.959e-89
Identity = 198/474 (41.77%), Postives = 267/474 (56.33%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPR---VYTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFAPGF----DHSGQ------VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKR--TGGGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQVPTQAYHYGNTFLRPPQSQLSLQPIVDNSYTNRMPS 453
            MD   VV D SSDE+ G  E       G DD DW+ ELL++V  +      D+SDDVVLVSEVV +PK + K S    +    E DDDDCV+LD DPDKP  +ENN   D SD+L IV E GQ+ACRDYPH RHLCAK+ F+ST HE+HC QCHCYVCD LAPC+HW       +HCHATDK E+WK +R++LK   +A + VP+   V  S   + I   Q P     +P Y    QV  P TIRACS S++   GF    +H G       +PRN+FR  LV Q L +T N+++  DR H+AGN    V S P +FKR  + G P+ +NR  Y  S+  +  +Y   P       + N  R +          + +Q P + N  + F NS+P   Q+SS  +V +N  N +PS+P VS  S+  + FV+S      P+  +++ +    P Q Q+S QP + + + N +PS
Sbjct:    1 MDSRPVVFDISSDEE-GWGETRDGGGCGGDDYDWLSELLEKVHGEP-----DDSDDVVLVSEVVPNPKPRSKPSSVAKEK---ELDDDDCVILDCDPDKPVVIENNDAGD-SDDLLIVGEKGQLACRDYPHARHLCAKFPFSSTPHESHCHQCHCYVCDSLAPCVHWGNATSSIDHCHATDKVEFWKLQRRNLKQGGRAPLPVPKLPDVSVSTPQQTI---QVPPPAPLQPNYPAHNQVSRPTTIRACSTSSHL--GFPNIRNHGGSQQSTYVIPRNKFRTQLVSQQLPTTRNNVIPGDRTHSAGNVGPHVNSRP-IFKRASSAGVPVSNNRSGYNSSHNNHVNRYSRNPSATAASNNKNLTRSRDFSSGTSTGSHAHQAPSRQNTSSRFGNSVPSHHQVSSHRSVGSNFSNSVPSRPAVSSHSNLGSRFVNSAPSSH-PSTIHNFDSL---PSQPQVSSQPGIGSGFVNSLPS 454
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C9G1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8550690.1}))

HSP 1 Score: 285.804 bits (730), Expect = 3.064e-88
Identity = 188/416 (45.19%), Postives = 239/416 (57.45%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKD-LNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRVYTSLSAEMIPISQG-PVSVSFEPTYVPSGQVPGPATIRACSWSTNF---------APGFDHSGQVPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTG--GGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQP 397
            MDP+ VV D SSDE+ G  E    +  G DD DWI EL             D+SDDVV V EV+++PK +LK+     K   ND++DDDDCVVLDGDPDKP A+EN+    E+DEL IV E GQ+ACRDYPHPRHLCAK+ F+ST HE HC  CHCYVCD  APC HW       +HCHA DK E WK +RK  K   +A +S P++  SLS  +   +Q  PV++S     +   QV  P TIRACS STN           PG+     VPR RF+ +L  Q   ST N++++RDRRH  GN   Q  S  ++FKRTG  G  L +NR  Y   N  Y +QY      +   +  N + WQ L+  +    + YQ   Q N    F+NS+P QPQ+SS PN+ N  +N +  QP
Sbjct:    5 MDPKRVVFDISSDEE-GWGE-TRGNGVGGDDYDWISELF------------DDSDDVVCVGEVLLNPKQRLKSMSVVAKSSANDDDDDDDCVVLDGDPDKPVAIEND-TAGEADELLIVGEKGQIACRDYPHPRHLCAKFPFSSTPHERHCDMCHCYVCDSHAPCAHWGTGSSGIDHCHANDK-ELWKAQRKCFKQEDKAPLSSPKL-PSLSKGLPQTNQAPPVTLS---NLLAQNQVSRPTTIRACSTSTNLDVINQGRSERPGYG----VPRKRFQTHLDSQQFLSTHNNIIRRDRRHNFGNLGPQFSSSNTMFKRTGSIGVALTTNRSGYGSPNNNYGSQYSRDSSPVATSMDKNPIAWQSLYSGMTSGSDVYQ-SSQQNSGGIFANSVPSQPQVSSHPNMGNIFVNPVLPQP 395
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6X7 ((ABC transporter H family member protein {ECO:0000313|EMBL:PSR86400.1}))

HSP 1 Score: 278.485 bits (711), Expect = 9.807e-83
Identity = 197/492 (40.04%), Postives = 269/492 (54.67%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPR---VYTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFAPGF----DHSGQ------VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTG--GGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQVPTQAYHYGNTFLRPPQSQLSLQPIVDNSYTNRMPSEPLIYGQLNAAPNEYQNI 471
            MD   VV D SSDE+ G  E       G DD DWI ELL++V  +      D+SDDVVLVSEVV +PK + K S    +    E DDDDCV+LD DPDKP  +ENN   D SD+L IV E GQ+ACRDYPH RHLCAK+ F+ST HE+HC QCHCYVCD LAPC+HW       +HCHATDK E+WK +R++LK   +A + VP+   +  S   + I   Q P     +P      QV    TIRACS S++   GF    +H G       +PRN+FRP LV Q L +T N+++   R H+AGN    V S P +FKR G  G P+ +NR  Y  S+  +  +Y   P       + N    +     +    + +Q P + N  + F N +P   Q+SS  +V +   + +PS+P VS  S+  + FV+S      P+  +++ +    P Q Q+S QP + + + N +PS      Q ++ PN   N 
Sbjct:    1 MDSRPVVFDISSDEE-GWGETRDGGGCGGDDYDWISELLEKVHGEP-----DDSDDVVLVSEVVPNPKPRSKPSSVAKEK---ELDDDDCVILDCDPDKPVVIENNDAGD-SDDLLIVGEKGQLACRDYPHARHLCAKFPFSSTPHESHCHQCHCYVCDSLAPCVHWGNATSSIDHCHATDKVEFWKLQRRNLKQGDRAPLPVPKLPDISVSTPQQTI---QVPPPAPLQPNNPAHNQVSRSTTIRACSTSSHL--GFPNIRNHGGSQQSTYVIPRNKFRPELVSQQLPTTRNNVIPGGRAHSAGNVGPHVNSHP-IFKRAGSAGVPVPNNRSGYNSSHNNHVNRYSRNPSATAASNNKNLTTSRDFSSGISTGSHAHQAPSRQNTSSRFGNLVPSHHQVSSHRSVGSGFSSSVPSRPAVSSHSNLGSRFVNSAPSSH-PSTVHNFDSL---PSQPQVSSQPGIGSGFVNSVPSP-----QASSKPNMGSNF 467
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSG0 ((A-agglutinin anchorage subunit like {ECO:0000313|EMBL:PSS14061.1}))

HSP 1 Score: 265.774 bits (678), Expect = 1.361e-78
Identity = 216/615 (35.12%), Postives = 313/615 (50.89%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRV-YTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSG------QVPRNR-FRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKR--TGGGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPM--------------------VSPPSSTANFFVSSVTEHQVPTQ---AYHYGNTFLRPPQSQLSLQPIVDNSYTNRMPSEPLIY-GQLNAAPNEYQNINL-NQDHSFLGSTEEDIDLSCINLTSESNQEPTPQHQDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSW---NLGSSDKP---VHSPEPDISDSSFFF 567
            MD   VVLD SSDE+V             DD DWI ELL E     +  + D SD++VL+ E  ++PK +LK+S+   K  + ++ DDDCVVLDGDPDKP  +ENN   D SD+L +V E GQ+ACRDYPH RH CAK+ F ST HE HC QCHCYVCD LAPC++W       +HCHATDK E+WK +R++ K   +A++   ++  TSL  +++  +Q       + T +   Q  G  TI A S S+NF  P   + G       VP ++ F P+LV QHL +  N++   D R  +G+   Q  +  ++FKR  + G  L +NR  Y  S+  +  Q+   P +    V  +  RWQ    ++    + +  P   N   +F NS+P QP+ SS  N+ +  +N +PSQP+                    VS   + ++ FV+S    Q  +Q   +Y++ NT   P Q Q S QP +  S+ N +PSE  +Y G +  A   +      N+  S       DI+ S ++ T   NQ+    +  +        LP   + D L   + N  +L FQ+DSW   NL  S+      +SPEP + D  F F
Sbjct:    1 MDSRPVVLDISSDEEVC------------DDFDWISELLHE-----AMGEGDGSDELVLLGEFAMNPKQRLKSSNIDEKR-SVKDLDDDCVVLDGDPDKPVEIENNTGGD-SDDLIVVGEKGQIACRDYPHSRHFCAKFPFNSTPHERHCHQCHCYVCDSLAPCVNWGNGTSIVDHCHATDKSEFWKLQRQNFKQFDKASLPGSKLPDTSLLIQLLQTNQCLPPAQMQTTSLAQNQTSGQTTILAFSRSSNFGIPNITNQGGSQQYVHVPSSKIFYPHLVAQHLLNMPNNISLSDTRQNSGSLGPQFINSWTMFKRAESAGVSLATNRSGYGSSDYNHTYQHSRSPSR----VAASPTRWQGFPSRMTSYRSAHNTPSPQNTVGSFGNSVPSQPRASSNSNMGSVFLNSVPSQPLASEHPNMGRILVNSVPSQLGVSSQPNISSSFVNSAPSPQASSQLNVSYNFENTV--PSQLQESSQPNMGRSFENLVPSETQVYCGPVKTANGWHDGFQQGNESPSAPDPIFSDINTSWVSPTGHCNQQTLADNSQVQSAVPTYHLPLLTELDPLLPVNTNPGSLVFQFDSWMHENLSVSEASGLNGYSPEPALLDEGFLF 590
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D5C2 ((Uncharacterized protein {ECO:0000313|EMBL:THF97572.1}))

HSP 1 Score: 261.151 bits (666), Expect = 4.347e-77
Identity = 196/543 (36.10%), Postives = 273/543 (50.28%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEED-DDDCVVLDGDPDKPEAVE-NNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWD-----GNHCHATDKEEYWKNERKSLKNRHQAAVSVPRVYTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSGQ-----VPRNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTGGG---PLLSNR-RYCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSVTEHQVPTQAYHYGNTFLRP--PQSQLSLQPIVDNSYTNRMPSEPLIYGQL---NAAPNEYQNINLNQDHSFLGSTEEDIDLSCINLTSESNQEPTPQH---QDIGLVTEHEAL 518
            M+  +VVLD SSDED               D DWI E L + D         E                K ++S +        +D DDDCVVL+GDPDKP A+E  N    +SD+L IV E GQ+ACRDYPH RHLCAK+ FTS+ HE HC QCHCYVCD LAPC++W       +HCHATDK+E+WK++R+S K  ++A +  P+ +   S  + P    P +++      P  Q+   ATIRACS  T+F  P     G+       RN+F P+LV + L ST N+++QRDRR   GN      +  ++FKR  G     L +NR RY  S+  Y  Q+   P  +     NN  RW+ L   +  +   YQ   Q N  ++  NS+P QP LSS PN+ +  +N +PS P +S   +    FV SV   QV +Q    G+ F  P   Q Q+S +P + +S+   +PS+P +Y       A   +Y     N+  S +  +  D D S +  T   + +P   +   Q  GL   H  L
Sbjct:    1 MESTHVVLDISSDEDY--------------DYDWISEFLDDADDSDEVVVVSEVVA-----------NHKQRSSKSSSVAAAKPKDLDDDCVVLEGDPDKPVAIEIENNTEGDSDDLSIVGEKGQIACRDYPHARHLCAKFPFTSSLHERHCPQCHCYVCDSLAPCVNWGNGTSRNDHCHATDKDEFWKSQRQSFKQGNKAPLPGPK-FPDTSRSIRP----PPTIT---QLQPKNQISRSATIRACSMPTSFGVPNITDQGRSQQSVYVRNKFHPDLVSRQLLSTRNNIIQRDRRF--GNLGPPYINSHTIFKRAAGSTRVALATNRTRYGSSDNNYATQFSRNPSPVAASNDNNPTRWRDLSSGMISDSEAYQNLSQQNTGSSLENSVPSQPLLSSHPNMGSVFLNSVPSGPRLSSQPNIGCSFVDSVPSPQVSSQP-SMGSNFENPLSCQPQVSSRPNMGSSFVYPVPSQPQVYSSQPIPAANDGQYGFQQGNETQSAVDPSFSDFDSSWVAPTGCQSNQPLADNSLFQIPGLTYHHPPL 507
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FLN6 ((Ammonium transporter 11 {ECO:0000313|EMBL:GFY99530.1}))

HSP 1 Score: 267.7 bits (683), Expect = 3.039e-76
Identity = 219/615 (35.61%), Postives = 309/615 (50.24%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRVY-TSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSG------QVPRNR-FRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTG-GGPLLSNRRYCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPM--------------------VSPPSSTANFFVSSVTEHQVPTQ---AYHYGNTFLRPPQSQLSLQPIVDNSYTNRMPSEPLIY-GQLNAAPNEYQNIN-LNQDHSFLGSTEEDIDLSCINLTSESNQEPTPQHQDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSW---NLGSSDKP---VHSPEPDISDSSFFFGL 569
            MD   VVLD SSDE+V             D  DWI ELL E     +  + D SDD+VLV E  ++PK +LK+S+   K  + ++ DDDCVVLDGDPDKP  +ENN   D SD+L +V E GQ+ACRDYPH RH CAK+ F ST HE HC QCHCYVCD LAPC++W       +HCHATDK E WK +R++ K   +A++   ++   SL  ++   +Q       + T +   Q  G  TI A S S NF  P   + G       VP ++ F P+LV QHL +  N++   D R  +G+   QV +  + FKR G  G  L+  R    +  Y   Y     + P  V  +  RWQ    ++    + Y  P   N   +F NS+P Q Q+SS PN+ +  +N +PSQP+                    VS   + ++ FV+SV   Q  +Q   +Y++ NT   P Q Q S QP +  S+ N +PSE  +Y G +  A + +      N+  S       DI+ S ++ T   NQ+    +  +        LP   + D L   + N  +L FQ+DSW   NL  S+      +SPEP + D  + FG+
Sbjct:    1 MDSRPVVLDISSDEEVC------------DGFDWISELLHE-----AMGEGDGSDDLVLVGEFAMNPKHRLKSSNIDEKR-SVKDLDDDCVVLDGDPDKPAEIENNTSGD-SDDLIVVGEKGQIACRDYPHSRHFCAKFPFNSTPHERHCHQCHCYVCDSLAPCVNWGNGTSIVDHCHATDKSECWKLQRQNFKQFDKASLPGSKLPDISLLMQLPQTNQCLPPAQMQTTSLAQNQTSGQTTILAFSRSPNFGIPNITNQGGSQQYVHVPSSKIFYPHLVAQHLLNMPNNISLSDTRQNSGSLGPQVINSCTTFKRAGSAGVSLATNRSGYGSSDYNHTYQH--SRSPSRVAASPTRWQGFPSKMTSYRSAYNTPSPQNTGGSFGNSVPSQTQVSSNPNMGSVFLNSVPSQPLASEHPNMGRILVNSVPSQLGVSSQPNISSSFVNSVPSPQASSQLNMSYNFENTV--PSQLQESSQPNMGRSFENLVPSETQVYCGPVKTANDWHDGFQEGNESPSAPDPIFSDINTSWVSPTDHFNQQTLADNSQVQRAVPTYHLPLLTEFDPLLPVNTNPGSLVFQFDSWMHENLSVSEASGLNGYSPEPALLDEEWRFGI 592
[Close]
BLAST of XM_017374485.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PPA2 ((Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:PSR94898.1}))

HSP 1 Score: 258.84 bits (660), Expect = 3.920e-76
Identity = 215/615 (34.96%), Postives = 307/615 (49.92%), Query Frame = 0
 
Query:    1 MDPEYVVLDASSDEDVGLDEKVVFDDSGEDDCDWIQELLKEVDRQTSTEDSDESDDVVLVSEVVVSPKSKLKNSDTGLKDLNDEEDDDDCVVLDGDPDKPEAVENNQLVDESDELQIVAETGQVACRDYPHPRHLCAKYQFTSTAHETHCGQCHCYVCDLLAPCLHWDG-----NHCHATDKEEYWKNERKSLKNRHQAAVSVPRV-YTSLSAEMIPISQGPVSVSFEPTYVPSGQVPGPATIRACSWSTNFA-PGFDHSG------QVP-RNRFRPNLVLQHLRSTDNDLLQRDRRHTAGNAALQVKSPPSVFKRTG--GGPLLSNRR-YCLSNQTYRAQYMSIPPQMPIPVHNNSMRWQPLFPQLGPELNTYQLPPQPNIHANFSNSLPYQPQLSSTPNVMNNHMNMMPSQPMVSPPSSTANFFVSSV-------TEHQVPT---------QAY-------HYGNTFLRPPQSQLSLQPIVDNSYTNRMPSEPLIY-GQLNAAPNEYQNINL-NQDHSFLGSTEEDIDLSCINLTSESNQEPTPQHQDIGLVTEHEALPRTEQQDDLFGGSPNLDALNFQYDSWN------LGSSDKPVHSPEPDISDSSFFF 567
            MD   VVLD SSDE+              D  DW+ ELL E     +  + D SDD+VLV EV ++PK +LK+S+   K   ++ DDD  VVLDGDPDKP   ENN    +SD+L IV E GQ+ACRDYPH RHLC K+ F ST HE HC QCHCYVCD LAPC++W       +HCHATDK+E W  +R++ K   +A++   ++  TSL  ++   +Q       +PT +   Q  G  TIRACS S+NF  P   + G       VP  N+F P+LV Q+L + +N +  RD R  +           ++FKR G  G  L  NR  Y  S+  +  Q+     Q P PV  +   W+ L  ++    + Y  P   N   NF N +P QP++SS  N+ +  +N +PSQP  S   +     V+SV       ++  +P+         QA+       ++ NT   P Q Q S QP   + + N +PSE  +Y G +  A + +      N+  S L     DI+ S ++     NQ+ +  +  +        LP   + D L   + N  +L+FQ+DSW         +S   ++SPEP + D  F F
Sbjct:    1 MDSGPVVLDISSDEE------------NCDGFDWLSELLHE-----AMGEGDGSDDLVLVGEVAMNPKQRLKSSNVEEKRPVNDLDDDC-VVLDGDPDKPAESENNWGGGDSDDLLIVGEKGQIACRDYPHSRHLCVKFPFNSTPHERHCHQCHCYVCDSLAPCVNWGNGTSIVDHCHATDKDEIWNLQRQNFKQFDKASLPGSKLPDTSLLMQLPQTNQCLPPTQMQPTSLAQNQTSGQTTIRACSRSSNFGIPNITNQGGSQQYVHVPSSNKFYPHLVTQYLLNMNNKINLRDTRQKSR----------TMFKRPGSAGIALAMNRSGYSSSDNNHAYQHS----QSPSPVAASPTGWRGLPSRMTSYRSAYNTPSLQNTGGNFGNLVPSQPRVSSHSNMGSVFLNSVPSQPRASSHPNMGRILVNSVHSQLGVSSQPNMPSSFVNAAPSPQAFSQLNMTCNFENTV--PSQLQESSQPNTGSIFENLVPSETHVYCGPIKTANDWHDGFQQGNETQSALDLRFSDINTSWVS----PNQQTSADNSQVQSAAPTYHLPLLAEFDPLLPLNTNPGSLDFQFDSWMHENPSVSEASGLNLYSPEPALLDEGFLF 577
Match NameStatsDescription
A0A2R6PEC0E-Value: 3.872e-94, PID: 36.76(Protein like {ECO:0000313|EMBL:PSR89725.1})[more]
A0A7J0H4F4E-Value: 6.074e-92, PID: 39.01(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A5B7CCH7E-Value: 8.369e-92, PID: 38.99(Uncharacterized protein {ECO:0000313|EMBL:MPA7778... [more]
A0A7J0HAQ6E-Value: 4.959e-89, PID: 41.77(Uncharacterized protein {ECO:0000313|EMBL:GFZ2018... [more]
A0A5J5C9G1E-Value: 3.064e-88, PID: 45.19(Uncharacterized protein {ECO:0000313|EMBL:KAA8550... [more]
A0A2R6P6X7E-Value: 9.807e-83, PID: 40.04(ABC transporter H family member protein {ECO:0000... [more]
A0A2R6QSG0E-Value: 1.361e-78, PID: 35.12(A-agglutinin anchorage subunit like {ECO:0000313|... [more]
A0A4S4D5C2E-Value: 4.347e-77, PID: 36.10(Uncharacterized protein {ECO:0000313|EMBL:THF9757... [more]
A0A7J0FLN6E-Value: 3.039e-76, PID: 35.61(Ammonium transporter 11 {ECO:0000313|EMBL:GFY9953... [more]
A0A2R6PPA2E-Value: 3.920e-76, PID: 34.96(Zinc finger CCCH domain-containing protein {ECO:0... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.