XM_017369302.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017369302.1

Identifier:

XM_017369302.1-protein

Sequence:

METQPPPINWSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVD
ANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPS
PDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPP
MHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDL
NMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVN
IEGKMVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESV
EKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDL
STILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEV
EHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVI
LQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLR
KVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQL
PQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGR
RNPNDNHYSRAKH

Sequence Length:

613

Sequence Checksum:

fc39907bbf6cc4fef650db4a1734656c

View location in JBrowse:

DCARv2_Chr1:762671..766456-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017369302.1, derives from mRNA, XM_017369302.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

Position :

Zoom :

x 1

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G8P3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5937130.1}))

HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 410/625 (65.60%), Postives = 493/625 (78.88%), Query Frame = 0

Query:   10 WSNIVKQPPKPPATKPPIVAPAS--IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP--------QGPEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKD-EDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
            WSNIVKQ    P      V+ A+  +   SCKST GIAVAVVDANAIIQGGE+L   +DKFVSV+EVIDEVRDP SRH LN +PF V+T++PSPDSLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RD PPP+HTVNV+RLPEKDLPGWGSNVPNLEEWEALEH   D + P SRILPL+DLN+  IP   N S +DGS+GN  E+H  N+E  +G ++KPRKY PK+KE++IEG KMVA G+DASQG  D+N  DWLPAVS+STHR++LRR+ARRE  E   EKD Q D  + ++SD  ++ +  D +T +S +E+H+      E E+ +   ++ DLSTIL +MRLEEDS + I++G + SN            EE +   N    + ED +++   E+EH  +S+Q  ES + S  DDNSSEQSW LRSLSES+VAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENGI+++ARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP K L+PKTKKK+K  EDDI+A ++IF HHTDK+APLQPPVRKALAVFSG+RNPNDNH+SR K
Sbjct:   49 WSNIVKQKAVAPKQVRHGVSAAADGVVVESCKSTKGIAVAVVDANAIIQGGERLSNCADKFVSVSEVIDEVRDPLSRHRLNFVPFTVDTIDPSPDSLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDIPPPIHTVNVRRLPEKDLPGWGSNVPNLEEWEALEHESEDKSNPNSRILPLQDLNLKAIPTAHNHSTEDGSMGNEGETHVGNQEDANGNFSKPRKYLPKQKEISIEGKKMVADGIDASQGQFDDNAGDWLPAVSKSTHRKYLRRQARREMSEALSEKDGQQDAVENIESDNLENRTCPDQLTVKSSDETHVVIANLEETEVSEGKNSNEDLSTILNEMRLEEDSLKAIQEGKEQSNSCAGLEPNCSAGEEDMSDSNGNIGVEEDDIENVNEELEHLEISSQTNESFDASCVDDNSSEQSWTLRSLSESTVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTPEIGRIFCPSCGNGGTLRKVAVTVGENGIVLSARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKILYPKTKKKSKQGEDDIYALDYIFRHHTDKRAPLQPPVRKALAVFSGKRNPNDNHFSRPK 673

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QNB5 ((RNA-binding protein {ECO:0000313|EMBL:PSS11416.1}))

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 417/636 (65.57%), Postives = 490/636 (77.04%), Query Frame = 0

Query:    5 PPPINWSNIVKQPPKPPATK-PPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP-QGPE-------------------EVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
            P  + WSNIVKQ P P   +  P  A   +   SCKST GIAVAVVDANAIIQGGE+L   SDKF+SV+EVIDEVRDP SRH LN LPF V T +PSP++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HTVNVKRLPEKDLPGWGSNVPNLEEWEALEH   D + P SRILPL+DLN+N IP + + + +DGS+ N  E H EN+E  DG + KPR++ P+KKE+NIEGK MVA G+DASQG  +++  DW+PAVSRSTHRRFLRR+ARRE YE   EKD Q D  + ++SD  ++  + D +T +S +E+ +      E ++ +   +D DLSTIL QMRLEEDS + +E+ N+ SN   GPE                   E  E+ENI E         +EH  +S+Q  ES N S  DDNSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++ ARRPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLP KFL+PK KKKNK  DDIF+S+ IF HHTDK APLQPP+R+ LAVF G+RNPNDNHYSR K
Sbjct:    8 PAALCWSNIVKQQPAPNQNQHDPTAAADRVFVDSCKSTKGIAVAVVDANAIIQGGERLANSSDKFISVSEVIDEVRDPTSRHRLNFLPFTVETSDPSPEALKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHEADDKSNPNSRILPLQDLNLNTIPTDHHHAAEDGSMENDGEPHVENQEDADGSFRKPRRFLPQKKEINIEGKKMVADGIDASQGQFNDDAGDWMPAVSRSTHRRFLRRQARREMYEALSEKDGQQDAVENIESDNLENERFTDQLTVKSSDETPVVHPILEERKVSERKASDEDLSTILNQMRLEEDSLKALEEENEQSNSCAGPESRTSTAEETMSNNSGSIGVEGDEIENIGEG--------LEHLEISSQTNESFNASYVDDNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLTARRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPHKFLYPKKKKKNKQGDDIFSSDDIFRHHTDKGAPLQPPIRQTLAVFGGKRNPNDNHYSRRK 635

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZRP7 ((Putative RNA-binding protein NOB1 {ECO:0000313|EMBL:MPA46186.1}) (Fragment))

HSP 1 Score: 798.505 bits (2061), Expect = 0.000e+0
Identity = 407/622 (65.43%), Postives = 486/622 (78.14%), Query Frame = 0

Query:   10 WSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN-EIEKSNVTDG-----DLSTILTQMRLEEDSSEVIEDGNDV--------SNPQGPEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
            WS+IVKQ P P      + +   +   SC+ST GIAVAVVDANAIIQGGE L K +DKFVSV+EV+DEVRDP SRH LN +PF ++TMEPSP++LKKV+NFARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HTVNVKRLPEKD+PGWGSNVPNLEEWEALEH V DG+ P SRILPLKD+++NVI + D+ S +DGS+G   E  S N+E  D  + KPR+Y PKKKE+NIEGK MV+ G+DASQG  D+N  DWLPAVSRSTHRR+LRRKARRE YE S EK+ Q D A   ++D  +     + +  +S  E+H+ N  +E+S++ DG     DLSTIL QMRL+EDS   +++  ++        +N    EE     N    +  D V+     +EH    +Q  ES  V   D NSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHACY VT E+GRIFCPKCGNGGTLRKVAVTVGENGI+++ARRPR+SLRGTKFSLP+PQGGRDA+TKNP+LREDQLP + L+PKTKKK K  DDIFAS++IF HHTDK+APLQPP+RKALAVFSG+RNPNDNH++R K
Sbjct:   22 WSSIVKQQPPPTTQNQQVSSADRVFVESCQSTKGIAVAVVDANAIIQGGETLAKCADKFVSVSEVMDEVRDPTSRHRLNFVPFTLDTMEPSPEALKKVVNFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTVNVKRLPEKDMPGWGSNVPNLEEWEALEHEVEDGSNPSSRILPLKDISLNVI-STDHHSTEDGSMGYGAEHQSGNQEDGDDSFRKPRRYLPKKKEINIEGKKMVSDGIDASQGQFDDNAGDWLPAVSRSTHRRYLRRKARREIYEASSEKEGQQDAAGNEENDNLEDTRCLNQMMHESSEETHVVNGNLEESSIRDGKSSGKDLSTILNQMRLDEDSLRALQEEEELGISCMGLEANNSTVEEDTPKNNANIVVEVDEVEITNDRLEHLETFSQTAES--VEYMDGNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYKVTMEVGRIFCPKCGNGGTLRKVAVTVGENGIVLSARRPRISLRGTKFSLPLPQGGRDAVTKNPILREDQLPHRLLYPKTKKKGKQGDDIFASDYIFRHHTDKRAPLQPPIRKALAVFSGKRNPNDNHFARPK 640

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FF55 ((RNA-binding NOB1-like protein {ECO:0000313|EMBL:GFY97332.1}))

HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 410/628 (65.29%), Postives = 486/628 (77.39%), Query Frame = 0

Query:    5 PPPINWSNIVKQPPKPPATK-PPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHL------ENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQG--------PEEVLEVEN----ISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
            P  + WSNIVKQ P P   +  P  A   +   SCKST GIAVAVVDANAIIQGGE L   SDKF+SV+EVIDEVRDP SRH LN LPF V T +PSP++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSPPP+HT+NVKRLPEKDLPGWGSNVPNLEEWEALEH   D + P SRILPL+DLN+N IP + + + +DGS+ N  E H EN++  DG + KPR+   +KKE+NIEGK MVA G+DASQG  +++  DW+ AVSRSTHRRFLRR+ARRE YE   EKD Q D  + ++SD  ++  + D +T +S +E+ +      E ++ +   +D DLSTIL QMRLEEDS + +E+ N  SN  G         EE +   N    +  D +++    +EH  +S+Q  ES N S  DDNSSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++ ARRPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLPQKFL+PK KKKNK  DDIF+S+ IF HHTDK APLQPP+R+ LAVF G+RNPNDNHYSR K
Sbjct:    8 PAALCWSNIVKQQPAPNQNQHDPTAAADRVFVDSCKSTKGIAVAVVDANAIIQGGEGLANSSDKFISVSEVIDEVRDPTSRHRLNFLPFTVETSDPSPEALKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPIHTINVKRLPEKDLPGWGSNVPNLEEWEALEHEADDKSNPNSRILPLQDLNLNTIPTDHHHAAEDGSMENDGEPHVENQDDADGSFRKPRRVLRQKKEINIEGKKMVADGIDASQGQFNDDAGDWMAAVSRSTHRRFLRRQARREMYEALSEKDGQQDAVENIESDNLENERFTDQLTVKSSDETPVVHPILEERKVSERKASDEDLSTILNQMRLEEDSLKALEEENGQSNSCGGPESRTSTAEEAMSNNNGSIGVEGDEIENIGEGLEHLEISSQTNESFNASYVDDNSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLTARRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPQKFLYPKKKKKNKQGDDIFSSDDIFRHHTDKGAPLQPPIRQTLAVFGGKRNPNDNHYSRRK 635

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3GKR3 ((Nin one binding (NOB1) Zn-ribbon-like protein {ECO:0000313|EMBL:OMO58672.1}))

HSP 1 Score: 794.653 bits (2051), Expect = 0.000e+0
Identity = 406/621 (65.38%), Postives = 487/621 (78.42%), Query Frame = 0

Query:    2 ETQPPPINWSNIVKQPPKPPATKPPIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN----EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKK--NKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
            E++P P  WSNI+K  P  P T+    A   +   SCKST GIAVAVVDANAII+GGEKL   +DKFV+V EV+ E+RDP SR+ L  +PF +++MEPSPD+L KVI FARATGDLQTLSDVDLKLIALT+ LEAQIHG+ HIR++PPP+H VNVKRLPEKDLPGWGSNVPNLEEWEAL+    DG    SRILPLKDLNMNV+P+++++  ++GSV    E+HSEN+E  + G+ +PR+Y P+KKEV IEGK MVA G+DASQG LD+N DDW PAVSRSTHRRFLRRKARRE YE  VEKD Q D  K+ D +  + AS  D +  QS  E+H +N    E E++    GD  LS+IL QMRLEEDS   +++  +V N    +  L VE   ED V++E   ++ F +S+Q  E+ + S ADD SSEQSWMLRSLSESSVAC+T D+AMQNV+LQMGLRL+APGGMQIR+LHRW+LKCHACY VT EIGRIFCPKCGNGGTLRKVAVTVGENG+++A+ RPR+SLRGTKFSLP+PQGGRDAITKN VLREDQLPQKFL+PKTKKK   + +DD+F +   F HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSR+K 
Sbjct:   10 ESKPAPC-WSNILKSQPPKPQTQNQTAATNQLFVESCKSTKGIAVAVVDANAIIEGGEKLTNSADKFVTVPEVLAEIRDPVSRYRLAFIPFSIDSMEPSPDALNKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGSNHIRNAPPPVHVVNVKRLPEKDLPGWGSNVPNLEEWEALDGEAEDGTNTNSRILPLKDLNMNVVPSDNHS--ENGSVETMGETHSENQEDAEQGFRRPRRYLPQKKEVKIEGKKMVADGIDASQGQLDDNGDDWRPAVSRSTHRRFLRRKARREYYEALVEKDCQEDIEKSKDKNNVEDASGTDQLLPQSAEEAHSKNGISEEAERTEAGKGDEDLSSILKQMRLEEDSLNALQEAEEVENTVDDDVNLAVEGDKEDMVNEE---LDQFEMSSQTNETVDASYADDVSSEQSWMLRSLSESSVACVTGDYAMQNVLLQMGLRLLAPGGMQIRQLHRWVLKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLASHRPRISLRGTKFSLPLPQGGRDAITKNFVLREDQLPQKFLYPKTKKKVNKQGDDDLFMAGVAFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRSKQ 624

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q8C6 ((RNA-binding protein {ECO:0000313|EMBL:PSS04164.1}))

HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 405/619 (65.43%), Postives = 476/619 (76.90%), Query Frame = 0

Query:   10 WSNIVKQPPKPPATKPPIVAPAS-IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQS--LNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNP-QGPEEVLEVE---------NISEDG--VDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAK 612
            WSNIVKQ P     +    A A  +   SCKST GIAV VVDAN+IIQGGE+L   +DKFVSV+EVIDEVRDP SRH LN LPF V T +PS ++LKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGTKH+RDSP P+HTVNVKRLPEKDLPGWGSNVPNLEEWEALEH   D + P SRILPL+DLN+N I    +   +DGS+ N    H EN+E  DG + K  ++ P+KKE+NIEGK MVA G+DASQG   ++  DWLPAVSRSTHR+FLRR+ARRE YE   EKD Q D  + ++SD  +S  + D +TD++  ++    E +I +   +D +LST L QMRLEEDS +   + N+ SN   GPE     E         NI  +G  +++    +EH  +S+Q  ES N S  DD+SSEQSWMLRSLSESSVAC+TSDFAMQNV+LQMGLRL+APGGMQIR+LHRWILKCHAC+ VTTEIGRIFCP CGNGGTLRKVAVTVGENGI++AA RPRVSLRGT+FSLP+P+GGRDAITKNP+LREDQLP KFL+PK KKKNK  DDIFAS+ IF HHTDK APLQPP+R+ALAVFSG+RNPNDNHYSR K
Sbjct:   13 WSNIVKQQPAANPNQNDFTAAADRVFVDSCKSTEGIAVVVVDANSIIQGGERLANSADKFVSVSEVIDEVRDPTSRHRLNFLPFTVETSDPSAEALKKVISFARATGDLQTLSDVDLKLIALTYSLEAQIHGTKHLRDSPSPIHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHEAEDKSNPNSRILPLQDLNLNTIATYHHHGTEDGSMDNDGIRHVENQEDADGSFRKSVRFSPQKKEINIEGKKMVADGIDASQGKFVDDAGDWLPAVSRSTHRKFLRRQARREMYEALSEKDGQQDAVENIESDNLESERFADQLTDKTPVVHPILEERKISEGKTSDENLSTTLNQMRLEEDSLKARHEENEQSNSCAGPESKTSTEEEATSDNNGNIGVEGDEIENIDEGLEHLEISSQNNESFNASYVDDDSSEQSWMLRSLSESSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACFKVTTEIGRIFCPSCGNGGTLRKVAVTVGENGIVLAAHRPRVSLRGTQFSLPLPKGGRDAITKNPILREDQLPHKFLYPKKKKKNKQGDDIFASDDIFRHHTDKGAPLQPPLRQALAVFSGKRNPNDNHYSRRK 631

[Close]

BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PHJ0 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453511.1}))

HSP 1 Score: 791.571 bits (2043), Expect = 0.000e+0
Identity = 419/621 (67.47%), Postives = 470/621 (75.68%), Query Frame = 0

Query:    1 METQPPPINWSNIVKQPPKPPATKP----PIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNV-IPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDN-NTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSI-ADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
            ME   P   WSNIVKQ P P         P  + A+   GSCKST GIAVAVVDANAIIQGGE+LH  +DKFVSV++VI EVRDP SRH LN LPF V TMEPSP+SLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGT H+R+SPPP+ TVNVKRLPEKDLPGWGSNVPNL +WEALEHAVGDG GPESRILPLKDLNMNV I  + + + +D +  +  + H       +G   K  K+ PKKKEV IEG KMVA G+DASQG  D+ N DDWLPAVSRSTHRRFLRRKAR E YE S EKD+QND     + D  D     DL+          EN  E       D+ST+L QMRL+EDS     +GN            E+EN++E        E+E  ++++   ES + S+  DD+SSEQSWMLRSLSESSVAC+T DFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENG  +AARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP KFLHPKTKKKNK  DDIFA+N IF HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct:    1 MEAPKPAPCWSNIVKQNPPPQNPNNHGLDPSQSVATALVGSCKSTKGIAVAVVDANAIIQGGEQLHNAADKFVSVSDVIQEVRDPTSRHRLNFLPFTVETMEPSPESLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTSHLRESPPPIRTVNVKRLPEKDLPGWGSNVPNLAQWEALEHAVGDGTGPESRILPLKDLNMNVSISGDKDQNNEDFASADGSKPHD------NGALDKSWKHLPKKKEVVIEGRKMVADGIDASQGQHDDDNADDWLPAVSRSTHRRFLRRKARLEKYESS-EKDVQNDG----NEDNLDDDKLPDLI---------YENSDELCANGGEDISTVLDQMRLQEDS-----EGN------------EIENVNE--------ELEQLDVTSATTESVDASLYVDDDSSEQSWMLRSLSESSVACVTGDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACFKVTMEIGRIFCPSCGNGGTLRKVAVTVGENGATIAARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKFLHPKTKKKNKHVDDIFATNEIFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 576

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PFN2 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453539.1}))

HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 418/621 (67.31%), Postives = 470/621 (75.68%), Query Frame = 0

Query:    1 METQPPPINWSNIVKQPPKPPATKP----PIVAPASIAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNV-IPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEG-KMVAAGVDASQGALDN-NTDDWLPAVSRSTHRRFLRRKARRETYEESVEKDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLENEIEKSNVTDGDLSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSI-ADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
            ME   P   WSNIVKQ P P         P  + A+   GSCKST GIAVAVVDANAIIQGGE+LH  +DKFVSV++VI EVRDP SRH LN LPF V TMEPSP+SLKKVI+FARATGDLQTLSDVDLKLIALT+ LEAQIHGT H+R+SPPP+ TVNVKRLPEKDLPGWGSNVPNL +WEALEHAVGDG GPESRILPLKDLN+NV I  + + + +D +  +  + H       +G   K  K+ PKKKEV IEG KMVA G+DASQG  D+ N DDWLPAVSRSTHRRFLRRKAR E YE S EKD+QND     + D  D     DL+          EN  E       D+ST+L QMRL+EDS     +GN            E+EN++E        E+E  ++++   ES + S+  DD+SSEQSWMLRSLSESSVAC+T DFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHAC+ VT EIGRIFCP CGNGGTLRKVAVTVGENG  +AARRPR+SLRGTKFSLP+PQGGRDAITKNP+LREDQLP KFLHPKTKKKNK  DDIFA+N IF HHTDK+APLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct:    1 MEAPKPAPCWSNIVKQNPPPQNPNNHGLDPSQSVATALVGSCKSTKGIAVAVVDANAIIQGGEQLHNAADKFVSVSDVIQEVRDPTSRHRLNFLPFTVETMEPSPESLKKVISFARATGDLQTLSDVDLKLIALTYTLEAQIHGTSHLRESPPPIRTVNVKRLPEKDLPGWGSNVPNLAQWEALEHAVGDGTGPESRILPLKDLNLNVSISGDKDQNNEDFASADGSKPHD------NGALGKSWKHLPKKKEVVIEGRKMVADGIDASQGQHDDDNADDWLPAVSRSTHRRFLRRKARLEKYESS-EKDVQNDG----NEDNLDDDKLPDLI---------YENSDELCANGGEDISTVLDQMRLQEDS-----EGN------------EIENVNE--------ELEQLDVTSATTESVDASLYVDDDSSEQSWMLRSLSESSVACVTGDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACFKVTMEIGRIFCPSCGNGGTLRKVAVTVGENGATIAARRPRISLRGTKFSLPLPQGGRDAITKNPILREDQLPHKFLHPKTKKKNKHVDDIFATNEIFTHHTDKRAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 576

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BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2W3F9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT39719.1}))

HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 422/637 (66.25%), Postives = 492/637 (77.24%), Query Frame = 0

Query:    1 METQPPPINWSNIVKQPP------KPPATKPPIVAPASIAA-----GSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVE-KDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN--EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVSNPQGPEEVLEVENISEDGVDDEAHE-------VEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
            M+TQPPP  WS I+KQPP      + PAT     A  +  A     G CKST GIAVAVVDANAIIQGG+KL+  +D+FVSV EV+ E+RD  SRHSLN LPF V+T+EPSPDSLKKVI+FARATGDL TLSDVDLKLIALT+ LEAQ HGT+H+RD PPP+HTVNVKRLPEK+LPGWG+NVPN EEWEA+EHA+ +G    SRILPLKDL++NVIP  D  S  DGSV N  +SHSENK   D G++KPRKY P+KKEV IEGK MVA G+DASQG  D++ DDWLPAVSRSTHRRFLRRKARRE  E S +  D+Q  T  T+D +  ++    D+    +  E+   N  + + S V DG+  LSTIL+QMRLEEDS++ ++D  DVS      E  + +  S +  DDE          VE   + +Q  ES   S  DDNSSEQSWML+SLSESSVAC+T+DFAMQNVILQMGLRLVAPGGMQIRELHRW+LKCHACY VTT++GRIFCP CGNGGTLRKVAVTVGENGI++AARRPRVSLRGTKFSLP+PQGGRDA+TKNP+LREDQLPQK L+PKTKKKNK  D+I+  + IFL+HT KKAPLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct:    1 MDTQPPPC-WSTILKQPPPPPPPPQNPATVTADAASVATTATGVLVGRCKSTKGIAVAVVDANAIIQGGDKLNHSADRFVSVPEVLLEIRDENSRHSLNFLPFTVDTLEPSPDSLKKVISFARATGDLHTLSDVDLKLIALTYTLEAQFHGTQHLRDCPPPIHTVNVKRLPEKELPGWGANVPNPEEWEAIEHALDEGANTTSRILPLKDLSLNVIPL-DQQSSRDGSVVNGGDSHSENKMDADDGFSKPRKYLPQKKEVKIEGKKMVADGIDASQGQYDDHADDWLPAVSRSTHRRFLRRKARREMSETSSKMDDLQEATENTVD-ENLNNCQCDDISMHHNPEENTTANTEDGKVSEVRDGEEHLSTILSQMRLEEDSAKALQDAADVSIFTEGTESNDTKQNSNELEDDEGENFDTADGGVEDAEMDSQMDESIETSFVDDNSSEQSWMLKSLSESSVACVTADFAMQNVILQMGLRLVAPGGMQIRELHRWVLKCHACYKVTTDVGRIFCPNCGNGGTLRKVAVTVGENGIVIAARRPRVSLRGTKFSLPLPQGGRDAVTKNPILREDQLPQKLLYPKTKKKNKG-DEIYTPDTIFLNHTSKKAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 633

[Close]

BLAST of XM_017369302.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BPY0 ((Uncharacterized protein {ECO:0000313|EMBL:PHU08529.1}))

HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 423/639 (66.20%), Postives = 493/639 (77.15%), Query Frame = 0

Query:    1 METQPPPINWSNIVKQPPKPPATKPPIVAPAS-------------IAAGSCKSTNGIAVAVVDANAIIQGGEKLHKMSDKFVSVAEVIDEVRDPRSRHSLNLLPFDVNTMEPSPDSLKKVINFARATGDLQTLSDVDLKLIALTHMLEAQIHGTKHIRDSPPPMHTVNVKRLPEKDLPGWGSNVPNLEEWEALEHAVGDGNGPESRILPLKDLNMNVIPAEDNTSIDDGSVGNAVESHSENKEGFDGGYTKPRKYFPKKKEVNIEGK-MVAAGVDASQGALDNNTDDWLPAVSRSTHRRFLRRKARRETYEESVE-KDIQNDTAKTMDSDKQDSASYQDLVTDQSLNESHLEN--EIEKSNVTDGD--LSTILTQMRLEEDSSEVIEDGNDVS-NPQGPEE------VLEVENISEDGVDDEAHEVEHFNLSNQAGESGNVSIADDNSSEQSWMLRSLSESSVACITSDFAMQNVILQMGLRLVAPGGMQIRELHRWILKCHACYNVTTEIGRIFCPKCGNGGTLRKVAVTVGENGIIVAARRPRVSLRGTKFSLPMPQGGRDAITKNPVLREDQLPQKFLHPKTKKKNKDEDDIFASNHIFLHHTDKKAPLQPPVRKALAVFSGRRNPNDNHYSRAKH 613
            M+TQPPP  WS I+KQPP PP     + A A+             +  G CKST GIAVAVVDANAIIQGG+KLH  +D+FVSV EV+ E+RD  SRHSLN LPF V+T+EPSPDSLKKVI+FARATGDL TLSDVDLKLIALT+ LEAQ HGT+H+RD PPP+HTVNVKRLPEK+LPGWG+NVPN EEWEA+EHA+ +G    SRILPLKDL++NVIP  D  S  DGSV N  +SHSENK   D G++KPRKY P+KKEV IEGK MVA G+DASQG  D++ DDWLPAVSRSTHRRFLRRKARRE  E S +  D+Q  T  T+D +  ++    D+    +  E+   N  + + S V DG+  LSTIL+QMRLEEDS++ ++D  DVS   +GPE         E+E+   +  D     VE   +  Q  ES   S  DDNSSEQSWML+SLSESSVAC+T+DFAMQNVILQMGLRLVAPGGMQIRELHRW+LKCHACY VTT++GRIFCP CGNGGTLRKVAVTVGENGI++AARRPRVSLRGTKFSLP+PQGGRDA+TKNP+LREDQLPQK L+PKTKKKNK  D+I+  + IFL+HT KKAPLQPPVRKALAVFSG+RNPNDNHYSRAKH
Sbjct:    1 MDTQPPPC-WSTILKQPPPPPQNPATVTADAASGATTAAVASATGVLVGRCKSTKGIAVAVVDANAIIQGGDKLHHSADRFVSVPEVLLEIRDENSRHSLNFLPFTVDTLEPSPDSLKKVISFARATGDLHTLSDVDLKLIALTYTLEAQFHGTQHLRDCPPPIHTVNVKRLPEKELPGWGANVPNPEEWEAIEHALDEGANTTSRILPLKDLSLNVIPL-DQQSSRDGSVVNGGDSHSENKMDADDGFSKPRKYLPQKKEVKIEGKKMVADGIDASQGQYDDHADDWLPAVSRSTHRRFLRRKARREMSETSSKMDDLQEATENTVD-ENLNNCQCDDISMHHNPEENTTANTEDGKVSEVRDGEEHLSTILSQMRLEEDSAKALQDAADVSIFTEGPESNDTKQNSNELEDDEGENFDTADGGVEDAEMDCQMDESIETSFVDDNSSEQSWMLKSLSESSVACVTADFAMQNVILQMGLRLVAPGGMQIRELHRWVLKCHACYKVTTDVGRIFCPNCGNGGTLRKVAVTVGENGIVIAARRPRVSLRGTKFSLPLPQGGRDAVTKNPILREDQLPQKLLYPKTKKKNKG-DEIYTPDTIFLNHTSKKAPLQPPVRKALAVFSGKRNPNDNHYSRAKH 635


Match Name	Stats	Description
A0A7J7G8P3	E-Value: 0.000e+0, PID: 65.60	(Uncharacterized protein {ECO:0000313\|EMBL:KAF5937... [more]
A0A2R6QNB5	E-Value: 0.000e+0, PID: 65.57	(RNA-binding protein {ECO:0000313\|EMBL:PSS11416.1}... [more]
A0A5B6ZRP7	E-Value: 0.000e+0, PID: 65.43	(Putative RNA-binding protein NOB1 {ECO:0000313\|EM... [more]
A0A7J0FF55	E-Value: 0.000e+0, PID: 65.29	(RNA-binding NOB1-like protein {ECO:0000313\|EMBL:G... [more]
A0A1R3GKR3	E-Value: 0.000e+0, PID: 65.38	(Nin one binding (NOB1) Zn-ribbon-like protein {EC... [more]
A0A2R6Q8C6	E-Value: 0.000e+0, PID: 65.43	(RNA-binding protein {ECO:0000313\|EMBL:PSS04164.1}... [more]
A0A5N6PHJ0	E-Value: 0.000e+0, PID: 67.47	(Uncharacterized protein {ECO:0000313\|EMBL:KAD6453... [more]
A0A5N6PFN2	E-Value: 0.000e+0, PID: 67.31	(Uncharacterized protein {ECO:0000313\|EMBL:KAD6453... [more]
A0A2G2W3F9	E-Value: 0.000e+0, PID: 66.25	(Uncharacterized protein {ECO:0000313\|EMBL:PHT3971... [more]
A0A2G3BPY0	E-Value: 0.000e+0, PID: 66.20	(Uncharacterized protein {ECO:0000313\|EMBL:PHU0852... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.