XM_017384232.1

Resource Type: 
Polypeptide
Name: 
XM_017384232.1
Identifier: 
XM_017384232.1-protein
Sequence: 
MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSN
CLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGE
VTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSK
IDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDD
FEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTS
NSDEGSVTSTEDEFVSTIGLSSTTGHRSSRRRRSRFFDN
Sequence Length: 
289
Sequence Checksum: 
9e76f02ab4528f007d03c64c514cfafc
View location in JBrowse: 
DCARv2_Chr1:1330200..1332076-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017384232.1, derives from mRNA, XM_017384232.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YSI7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA34286.1}))

HSP 1 Score: 399.823 bits (1026), Expect = 1.318e-138
Identity = 226/300 (75.33%), Postives = 246/300 (82.00%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVSTIGLS-STTGHRSSRRRRSRFFDN 289
            ME+ Q N+ WE V+CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSAHGM S S S  TS ATS  N        EA  KP CPLCRGEVTGW IV+ ARVHL+EK+R CEEE CAF GTY EL++HAQ+EHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDD+GD+FED PG +GNWWTSCILYQVFDNFRTSR RRRSRA++S RG+R ++YDTSNSDEGSV S          T+DEFVST G S    GHRSSRRRRSRF+DN
Sbjct:   18 MEV-QLNTKWEDVTCPICLDFPHNGVLLQCSSYEKGCRPFVCDTDHLHSNCLDRFKSAHGMSSGSQSPSTSVATSTGN--IHQMFSEANGKPSCPLCRGEVTGWVIVDKARVHLDEKKRYCEEEHCAFMGTYLELQKHAQIEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDTGDEFEDFPGDEGNWWTSCILYQVFDNFRTSRNRRRSRASDSGRGSRRLSYDTSNSDEGSVASVEFAEYRVDETDDEFVSTSGHSRGRAGHRSSRRRRSRFYDN 314
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1NI03 ((Uncharacterized protein {ECO:0000313|EMBL:PWA73090.1}))

HSP 1 Score: 389.423 bits (999), Expect = 1.177e-134
Identity = 203/299 (67.89%), Postives = 234/299 (78.26%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTSTE---------DEFVSTIGLS-STTGHRSSRRRRSRFFDN 289
            ME  Q +  WE V+CPICL  PHN VLL+CS+Y KGCRPFVCDT HLHSNCLDRF++A+GM   S S  TS  TS+ N +   +D   T KP+CPLCRG+VTGW +V  AR  L+EK+R CEEE+C FSGTY ELR+HA++EHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVP GVVLGDYVIEYG +DSGD++ED PG  GNWWTSCILYQVFDNFR SR RRR R + +RR +R ++YDTSNSDEGSV STE         DEFV+   L+   TGHRSSRRR +RF+DN
Sbjct:    1 MEGFQLDIKWEDVTCPICLSFPHNCVLLRCSAYNKGCRPFVCDTGHLHSNCLDRFQAANGMSPGSKSPVTSDTTSIPNSTVKEED---TSKPLCPLCRGDVTGWVVVNEARAKLDEKKRCCEEEKCTFSGTYLELREHAEVEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPHGVVLGDYVIEYGINDSGDEYEDFPGDDGNWWTSCILYQVFDNFRNSRNRRRQRISAARRESRRLSYDTSNSDEGSVVSTEFPDYRADEVDEFVTNSRLARGRTGHRSSRRRPTRFYDN 296
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GBS1 ((E3 ubiquitin-protein ligase, putative {ECO:0000313|EMBL:GFZ08247.1}))

HSP 1 Score: 391.349 bits (1004), Expect = 1.360e-134
Identity = 207/292 (70.89%), Postives = 235/292 (80.48%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTSTE----------DEFVSTIGLSSTTGHRSSRRR 282
            ME  Q  ++WE V+CPICL+ PHN VLLQCSSY KGCRPFVCDTDHLHSNCL RFK+A+GM S S S  TS AT L N  T+    E++ KP CPLCRGEVTGW IV++ARVHLN K+R CEE++CAF+GTY ELR+HAQLEHPHA PS+IDPARQLDWENFQQSSEIIDVLSTIH+EVPRGVVLGDYVIEYGD+D+GD+FED PG  GNWWTSCILYQVFDNFRTSR RRRSRA +SRRG  N++Y+ SNS+EGSV S E          DEFVST   S+ T HR+  RR
Sbjct:    1 MEESQHITNWEDVNCPICLDFPHNCVLLQCSSYEKGCRPFVCDTDHLHSNCLQRFKTAYGMSSGSRSPSTSDATPLENMHTEFL--ESSGKPSCPLCRGEVTGWVIVDIARVHLNGKKRCCEEDRCAFTGTYLELREHAQLEHPHARPSEIDPARQLDWENFQQSSEIIDVLSTIHAEVPRGVVLGDYVIEYGDNDTGDEFEDFPGDDGNWWTSCILYQVFDNFRTSRNRRRSRAGDSRRGTHNLSYEISNSNEGSVASVEFTEYRVDEIDDEFVST---SNHTRHRAGHRR 287
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R763 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056491.1}))

HSP 1 Score: 387.111 bits (993), Expect = 9.408e-134
Identity = 203/288 (70.49%), Postives = 230/288 (79.86%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVST-IGLSSTTGHR 277
            M+  Q N+ WE V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSA+GM    SS  TS  T + N  T+    +  DKP CPLCRGEVTGW +V+ AR++L+EK+R CEEE+C F GTY EL++HAQLEHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDNFR SR RRRSR +++RRGNR  +YDTS SDEGSVTS          T+DEFVST I    ++ HR
Sbjct:   18 MDDIQLNTSWEDVICPICLDFPHNGVLLQCSSYGKGCRPFVCDTDHLHSNCLDRFKSAYGM----SSPSTSDVTPVEN--TEPVVSKGNDKPSCPLCRGEVTGWVVVDKARLYLDEKKRCCEEERCTFRGTYLELQKHAQLEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNFRNSRNRRRSRVSDTRRGNRRTSYDTSISDEGSVTSVEYSDYRVDETDDEFVSTNIPSRGSSSHR 299
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XIR5 ((Uncharacterized protein {ECO:0000313|EMBL:KVH91515.1}))

HSP 1 Score: 386.726 bits (992), Expect = 1.215e-133
Identity = 203/288 (70.49%), Postives = 229/288 (79.51%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTST----------EDEFVSTIGLS-STTGHR 277
            ME  Q ++ WE V CPICL  PHN VLLQCSSY KGCRPFVCDTDHLHSNCLDRF+ A+GML    S  T+ ATS++N  T T   EAT +  CPLCRG+VTGW +V  ARV L+EK+R CE+EQC F+GTY ELR+HA++EHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVP GVVLGDYVIEYGD+DSGD+FED PG  GNWWTSCILYQVFDNFR+SR RRRSR  ESRR +R ++YDTSNSDEGSV ST          EDEFV++  +S   TGHR
Sbjct:    1 MEGFQIDTKWEDVICPICLSFPHNCVLLQCSSYDKGCRPFVCDTDHLHSNCLDRFRIANGMLP--GSDLTTEATSIANSVTTTA--EATSRSSCPLCRGDVTGWVVVNEARVRLDEKKRCCEDEQCTFTGTYMELRKHAKVEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPHGVVLGDYVIEYGDNDSGDEFEDFPGDDGNWWTSCILYQVFDNFRSSRNRRRSRVIESRRESRRLSYDTSNSDEGSVVSTEFAEYRADEAEDEFVTSSSISRGRTGHR 284
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2N4A1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL12p024933:mrna}))

HSP 1 Score: 386.341 bits (991), Expect = 1.725e-133
Identity = 201/277 (72.56%), Postives = 226/277 (81.59%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVST 267
            ME  + N++WE V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSA+GM S S+S  T +      EST+    E   KP CPLCRGEVTGW +V+ AR++L+EK+R CEE QC F GTY EL++HAQLEHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDN R SR RRRSR +++RRGNR I+YDTSNSDEGSVTS          T+DEFVST
Sbjct:    1 MEDIRLNTNWEDVICPICLDFPHNGVLLQCSSYEKGCRPFVCDTDHLHSNCLDRFKSAYGMSSPSTSDVTPT------ESTEPVVSEVC-KPSCPLCRGEVTGWVVVDKARLYLDEKKRCCEEHQCKFMGTYTELQKHAQLEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNIRNSRNRRRSRVSDTRRGNRRISYDTSNSDEGSVTSVDYSEYRVDETDDEFVST 270
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R650 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056490.1}))

HSP 1 Score: 386.341 bits (991), Expect = 2.571e-133
Identity = 200/277 (72.20%), Postives = 225/277 (81.23%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVST 267
            M+  Q N+ WE V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSA+GM    SS  TS  T + N  T+    +  DKP CPLCRGEVTGW +V+ AR++L+EK+R CEEE+C F GTY EL++HAQLEHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDNFR SR RRRSR +++RRGNR  +YDTS SDEGSVTS          T+DEFVST
Sbjct:   18 MDDIQLNTSWEDVICPICLDFPHNGVLLQCSSYGKGCRPFVCDTDHLHSNCLDRFKSAYGM----SSPSTSDVTPVEN--TEPVVSKGNDKPSCPLCRGEVTGWVVVDKARLYLDEKKRCCEEERCTFRGTYLELQKHAQLEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNFRNSRNRRRSRVSDTRRGNRRTSYDTSISDEGSVTSVEYSDYRVDETDDEFVST 288
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R654 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8056489.1}))

HSP 1 Score: 386.726 bits (992), Expect = 3.323e-133
Identity = 203/288 (70.49%), Postives = 230/288 (79.86%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATDKPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVST-IGLSSTTGHR 277
            M+  Q N+ WE V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSA+GM    SS  TS  T + N  T+    +  DKP CPLCRGEVTGW +V+ AR++L+EK+R CEEE+C F GTY EL++HAQLEHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDNFR SR RRRSR +++RRGNR  +YDTS SDEGSVTS          T+DEFVST I    ++ HR
Sbjct:   18 MDDIQLNTSWEDVICPICLDFPHNGVLLQCSSYGKGCRPFVCDTDHLHSNCLDRFKSAYGM----SSPSTSDVTPVEN--TEPVVSKGNDKPSCPLCRGEVTGWVVVDKARLYLDEKKRCCEEERCTFRGTYLELQKHAQLEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNFRNSRNRRRSRVSDTRRGNRRTSYDTSISDEGSVTSVEYSDYRVDETDDEFVSTNIPSRGSSSHR 299
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GP30 ((uncharacterized protein LOC109009582 {ECO:0000313|RefSeq:XP_018845657.1, ECO:0000313|RefSeq:XP_018845658.1}))

HSP 1 Score: 385.571 bits (989), Expect = 6.719e-133
Identity = 210/298 (70.47%), Postives = 239/298 (80.20%), Query Frame = 0
 
Query:    5 QQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATD---KPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVSTIGLSSTTGHRSSRRRRSRFFDN 289
            Q N++WE V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFKSA+GM    S+  TS  T      T+ +DP A++   KP CPLCRGEVTGW +V+ AR++L+EK+R CEE QC F GTY EL++HAQLEHPHA PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDNFR SR RRRSR +++RRGNR  +YD S SDEGSV S          T+DEFVST   +  + HRSSRRRRSRF+DN
Sbjct:   22 QLNTNWEDVICPICLDFPHNGVLLQCSSYEKGCRPFVCDTDHLHSNCLDRFKSAYGM----STPLTSDITP-----TENRDPVASEGNCKPCCPLCRGEVTGWFVVDKARLYLDEKKRCCEEHQCTFRGTYLELQKHAQLEHPHARPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNFRNSRNRRRSRVSDTRRGNRRTSYDNSVSDEGSVASIEFPEYRIDETDDEFVSTNVPTGNSNHRSSRRRRSRFYDN 310
[Close]
BLAST of XM_017384232.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7I083 ((Uncharacterized protein {ECO:0000313|EMBL:TXG62358.1}))

HSP 1 Score: 385.956 bits (990), Expect = 9.784e-133
Identity = 202/294 (68.71%), Postives = 232/294 (78.91%), Query Frame = 0
 
Query:    1 MEIDQQNSDWESVSCPICLECPHNGVLLQCSSYVKGCRPFVCDTDHLHSNCLDRFKSAHGMLSESSSSRTSSATSLSNESTDTKDPEATD--KPVCPLCRGEVTGWAIVEVARVHLNEKRRRCEEEQCAFSGTYYELRQHAQLEHPHACPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDSGDDFEDLPGAQGNWWTSCILYQVFDNFRTSRRRRRSRANESRRGNRNINYDTSNSDEGSVTS----------TEDEFVSTIGLSSTTGHRSSRRR 282
            ME  + N +W+ V CPICL+ PHNGVLLQCSSY KGCRPFVCDTDHLHSNCLDRFK A+GM        ++S+TS  N +TDT+   + D  KP CPLCRGEVTGW  V+  R +LNEK+R C EEQC+F+GTY EL++HAQLEHPH+ PSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDD++GD+FED PG +GNWWTSCILYQVFDNFR +R RRRSRA E+RRG+R ++YDTSNSDEGSVTS          T+DEFVST     + G    RRR
Sbjct:   18 MEDVELNINWDDVICPICLDFPHNGVLLQCSSYDKGCRPFVCDTDHLHSNCLDRFKDANGM--------STSSTSDVNPTTDTRPVASEDSCKPACPLCRGEVTGWVAVDKVRANLNEKKRSCAEEQCSFTGTYLELQKHAQLEHPHSRPSKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDETGDEFEDFPGDEGNWWTSCILYQVFDNFRNARNRRRSRAAETRRGSRRLSYDTSNSDEGSVTSVDFAEYRIDETDDEFVSTTTSGPSRGSSGHRRR 303
Match NameStatsDescription
A0A5B6YSI7E-Value: 1.318e-138, PID: 75.33(Uncharacterized protein {ECO:0000313|EMBL:MPA3428... [more]
A0A2U1NI03E-Value: 1.177e-134, PID: 67.89(Uncharacterized protein {ECO:0000313|EMBL:PWA7309... [more]
A0A7J0GBS1E-Value: 1.360e-134, PID: 70.89(E3 ubiquitin-protein ligase, putative {ECO:000031... [more]
A0A5N6R763E-Value: 9.408e-134, PID: 70.49(Uncharacterized protein {ECO:0000313|EMBL:KAE8056... [more]
A0A103XIR5E-Value: 1.215e-133, PID: 70.49(Uncharacterized protein {ECO:0000313|EMBL:KVH9151... [more]
A0A7N2N4A1E-Value: 1.725e-133, PID: 72.56(Uncharacterized protein {ECO:0000313|EnsemblPlant... [more]
A0A5N6R650E-Value: 2.571e-133, PID: 72.20(Uncharacterized protein {ECO:0000313|EMBL:KAE8056... [more]
A0A5N6R654E-Value: 3.323e-133, PID: 70.49(Uncharacterized protein {ECO:0000313|EMBL:KAE8056... [more]
A0A2I4GP30E-Value: 6.719e-133, PID: 70.47(uncharacterized protein LOC109009582 {ECO:0000313... [more]
A0A5C7I083E-Value: 9.784e-133, PID: 68.71(Uncharacterized protein {ECO:0000313|EMBL:TXG6235... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.