Resource Type:
Polypeptide
Name:
XM_017375808.1
Identifier:
XM_017375808.1-protein
Sequence:
MGGGREVEVVNSKGCSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHPHA
PFSGLVICVTGLSKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYC
IPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAEL
QNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPL
WVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDA
LKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESV
CWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTR
KLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDY
IYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDF
LGSRKSFEMLKRVPGDDNSNVYELLIKA
Sequence Length:
478
Sequence Checksum:
9a9553349cb1d75dd4e451d958aeb699
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375808.1, derives from mRNA, XM_017375808.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U698 ((uncharacterized protein LOC113707408 isoform X3 {ECO:0000313|RefSeq:XP_027085522.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 304/491 (61.91%), Postives = 361/491 (73.52%), Query Frame = 0
Match: A0A6P6U698 ((uncharacterized protein LOC113707408 isoform X3 {ECO:0000313|RefSeq:XP_027085522.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 304/491 (61.91%), Postives = 361/491 (73.52%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSKVRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 5 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKVRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 493
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BXE9 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 281/437 (64.30%), Postives = 337/437 (77.12%), Query Frame = 0
HSP 2 Score: 53.9138 bits (128), Expect = 5.166e-5
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0
Match: A0A5B7BXE9 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 281/437 (64.30%), Postives = 337/437 (77.12%), Query Frame = 0
Query: 49 HAPFSGLVICVTGL------SKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDE-KESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
H +GL + G VRL+ESLY VK+VGENG+ DD N L +YA TENYC+PVGM EH KQSD I + +R + + RS++ LSG SL++D DV AEL+ K+ EAA +GA ++ W G NASH+VCEG S+ KY+GHS+NLVTPLWVLKTAKEK V RLVHIS DLARQ+GT+L+N Q+G EE D DAL S +K SH+ R + NLAK+GVRKRR RRMQ CQTPIRPITP+ LL+S+CWS+SEPT A+IYT+S E+A + H SVF++A E +ES ASFVN++R LTESEK +IFKNHFLTILFPVDRFAEMGPCSR+FFSD+GFTCLQVLD+IYAFYQENM E+E+AIHTDS HADRLRS+YSSKETAE G + FKRIDFLGSRKSFEMLKRV G++NSNVYELLI+A
Sbjct: 113 HGSRNGLFVVTLGWFVDSVRRNVRLNESLYSVKSVGENGMHMDDLNRLVQYAGTENYCLPVGMHEHAKQSDMIEEPHLRFSEKVFKRSVESTLSGHSLYVDLDVSAELRRKVIEAAAGEGATSIDQWFVGC-NASHIVCEGPSIRKYLGHSNNLVTPLWVLKTAKEKHVQRLVHISADLARQVGTMLDNAQNGTYGEEIIGDNGPQDALCSKSKASHDERLKIVNLAKNGVRKRRGRRMQTCQTPIRPITPSGLLDSICWSISEPTSTASIYTDSFSAEDASEHHTSVFFDAKGGEGRESEASFVNYSRPLTESEKTELIFKNHFLTILFPVDRFAEMGPCSRTFFSDTGFTCLQVLDHIYAFYQENMLAHEIEVAIHTDSRHADRLRSVYSSKETAERGSVAFKRIDFLGSRKSFEMLKRVAGENNSNVYELLIRA 548
HSP 2 Score: 53.9138 bits (128), Expect = 5.166e-5
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLVGVQ----MSHDSAS-VSTSSTHPHAPFSGLVICVTGLSK 64
VEV+NSKGCSRL V+ IS S R G+Q MS S+S ++ PFSGLVICVTGLSK
Sbjct: 10 VEVINSKGCSRLFVD-ISSSFR--GLQSFEPMSPASSSLIAEPVVRSTGPFSGLVICVTGLSK 69
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H2U1 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 264/436 (60.55%), Postives = 320/436 (73.39%), Query Frame = 0
Match: F6H2U1 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 264/436 (60.55%), Postives = 320/436 (73.39%), Query Frame = 0
Query: 49 HAPFSGLVICVTGL------SKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
H +GL + G VRL ESLY VKNVGENG+ D+ N L ++ EN C+P GM E+ KQS + + R+S RS+D LSG S+FID+D+ AEL+NK+ EAA GA LV+ W G NA++VVCEG S+ +Y+GHS+NLVTPLW+LKTAKE+ RLVH+S DLARQ+G +LENVQ+G+ +EE N++ D K SHE RQ + +LAK+GVR RR R MQ CQTPIRPI P+ LL+S+CWS+SEPT A+IYTESS + + SVF++A D KES ASF NF+R LTESEK +IFK HFLTIL PVDRFAEMGP SR+FFS GFTCLQVLD+IYAFYQENM+ E+E AIHTDS HADRLRS+YSSKET E GY FKRIDFLGSRKSFEMLKRV GD+NSNVYEL+I+A
Sbjct: 76 HGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGC-NANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPVDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA 510
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U5U0 ((uncharacterized protein LOC113707408 isoform X2 {ECO:0000313|RefSeq:XP_027085521.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
HSP 2 Score: 57.7658 bits (138), Expect = 2.587e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Match: A0A6P6U5U0 ((uncharacterized protein LOC113707408 isoform X2 {ECO:0000313|RefSeq:XP_027085521.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
Query: 65 VRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
VRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 142 VRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 554
HSP 2 Score: 57.7658 bits (138), Expect = 2.587e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKVRLDESLYGVKNVG 78
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK + + + +G
Sbjct: 1 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLG 90
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U4G7 ((uncharacterized protein LOC113707408 isoform X1 {ECO:0000313|RefSeq:XP_027085520.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
HSP 2 Score: 57.7658 bits (138), Expect = 2.787e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Match: A0A6P6U4G7 ((uncharacterized protein LOC113707408 isoform X1 {ECO:0000313|RefSeq:XP_027085520.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
Query: 65 VRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
VRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 146 VRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 558
HSP 2 Score: 57.7658 bits (138), Expect = 2.787e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKVRLDESLYGVKNVG 78
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK + + + +G
Sbjct: 5 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLG 94
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438K8M6 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 270/472 (57.20%), Postives = 333/472 (70.55%), Query Frame = 0
HSP 2 Score: 49.6766 bits (117), Expect = 9.885e-4
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
Match: A0A438K8M6 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 270/472 (57.20%), Postives = 333/472 (70.55%), Query Frame = 0
Query: 15 CSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHP--HAPFSGLVICVTGL------SKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
C+ L++ PS L + +S + H H +GL + G VRL ESLY VKNVGENG+ D+ N L ++ EN C+P GM E+ KQS + + R+S RS+D LSG S+FID+D+ AEL+NK+ EAA GA LV+ W G NA++VVCEG S+ +Y+GHS+NLVTPLW+LKTAKE+ RLVH+S DLARQ+G +LENVQ+G+ +EE N++ D K SHE RQ + +LAK+GVR RR R MQ CQTPIRPI P+ LL+S+CWS+SEPT A+IYTESS + + SVF++A D KES ASF NF+R LTESEK +IFK HFLTIL P+DRFAEMGP SR+FFS GFTCLQVLD+IYAFYQENM+ E+E AIHTDS HADRLRS+YSSKET E GY FKRIDFLGSRKSFEMLKRV GD+NSNVYEL+I+A
Sbjct: 89 CTHLVMEGALPSPCLEHMDLSLEVYFGGRKLDHALKHGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGC-NANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPIDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA 559
HSP 2 Score: 49.6766 bits (117), Expect = 9.885e-4
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHPHAPFSGLVICVTGLSKVRLD 68
VEV++SKGCSRLLV S + G++ + S+S + PFSGLVICVT K +D
Sbjct: 11 VEVISSKGCSRLLVGISSSLPPMRGLKTFEPMSPASSSVGRSNGPFSGLVICVTEARKQVMD 72
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VG79 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19691.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
HSP 2 Score: 58.151 bits (139), Expect = 2.458e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Match: A0A068VG79 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19691.1}))
HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 267/415 (64.34%), Postives = 314/415 (75.66%), Query Frame = 0
Query: 65 VRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
VRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 143 VRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 555
HSP 2 Score: 58.151 bits (139), Expect = 2.458e-6
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKVRLDESLYGVKNVG 78
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK + + + +G
Sbjct: 1 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLG 90
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UAZ0 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 284/481 (59.04%), Postives = 355/481 (73.80%), Query Frame = 0
Match: A0A2C9UAZ0 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 284/481 (59.04%), Postives = 355/481 (73.80%), Query Frame = 0
Query: 6 EVEVVNSKGCSRLLV--NSISPSVRLVGVQ-MSHDSASVSTSSTHP-----HAPFSGLVICVTGLSKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
+VEV++SKGCSRL V +S PS R G+Q S + S++ + P PFSGLVICVTGLSKVRL ESLY VK+VG N + DD N + TEN C+PVG + KQ + RS+ R SNRS++ LSG+S+++D+D+ +L+NK+ EAA+ +GA ++ W G +ASHVVCEG S +Y+GHS++LVTP WVLKTAKEK RLV +S DLARQ+G +LE+ Q+G+A +E N S DA K S RQ + N AK+GVR RR RRMQ CQTPIRPITP+ LL+S+CWS+SEP+ A+IYT+S ++ + H SVFY+A D K+S ASF N TR LTESEK +IFKNHFLTILFP+DRF+EMGP SR+FFS++GFTCLQVLD+IYAFYQENMS E+E AIHTDS HAD+LRS+YSSKETAE GY+ FKRIDFLGS +SFEMLKRV GD+NSNVYELLI+A
Sbjct: 9 KVEVISSKGCSRLFVGFSSSIPSFR--GLQSFEPMSPATSSAGSEPLLVRSSGPFSGLVICVTGLSKVRLSESLYCVKSVGGNDVHLDDLNRRVSSSGTENSCLPVGFNDA-KQFEMTEGQHKRSSGRSSNRSIEPTLSGNSIYVDSDISDDLRNKVYEAASGEGATFLDRWFVGC-SASHVVCEGASTQRYLGHSNHLVTPHWVLKTAKEKHAQRLVQMSADLARQVGVMLEDFQNGIAGQEINGGNASQDAQSWRNKASFGERQQIVNFAKNGVRSRRGRRMQTCQTPIRPITPSSLLDSICWSISEPSSTASIYTDSLSCDDVSEHHTSVFYDAKGDNKDSEASFANPTRPLTESEKTELIFKNHFLTILFPIDRFSEMGPSSRTFFSENGFTCLQVLDHIYAFYQENMSASEIEAAIHTDSRHADQLRSVYSSKETAELGYVIFKRIDFLGSCRSFEMLKRVAGDNNSNVYELLIRA 485
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BBW7 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 531.561 bits (1368), Expect = 0.000e+0
Identity = 273/441 (61.90%), Postives = 331/441 (75.06%), Query Frame = 0
HSP 2 Score: 51.9878 bits (123), Expect = 1.757e-4
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0
Match: A0A5J5BBW7 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 531.561 bits (1368), Expect = 0.000e+0
Identity = 273/441 (61.90%), Postives = 331/441 (75.06%), Query Frame = 0
Query: 49 HAPFSGLVICVTGL------SKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQL-----DVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
H +GL + G VRL+ESLY V++VGENG+ +D N L +YA TEN C+PVG+ +H KQSD I + DV RSM+ LSG SLF+D DV EL++K+ EAA +GA L++ W G NASH+VCEG S+ KY+GHS+NLVTPLWVLKTAKEKRV RLVHIS DLARQ+GT+L+NVQ+G+ EE D A+ S +K SH+ R + NLAK+GVRKRR RRMQ CQTPI PITP+ LL+S+CWS+SEPT A+IYT+S E+ + H SVF++A + ES ASFVNF+R LTESEK +IFKNHFLTI+FPVDRFAEMGPCSR+FF+++GFTCLQVLD IYAFYQENM E+E+AIHTDS HADRLRS+YS TAE GY+ FKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 116 HGLRNGLFVVTLGWFVDSVRRNVRLNESLYSVRSVGENGMHMNDLNRLIQYAGTENSCLPVGLHDHTKQSDMIEEPHCFPEDV------FKRSMESTLSGHSLFVDLDVSTELRSKVIEAAAGEGATLLDQWFVGC-NASHIVCEGPSIRKYLGHSNNLVTPLWVLKTAKEKRVQRLVHISADLARQVGTMLDNVQNGM--EEIIGDNGPQYAVCSKSKASHDERIKIVNLAKNGVRKRRGRRMQTCQTPIHPITPSSLLDSICWSISEPTSTASIYTDSFSAEDGSEHHTSVFFDAKGEGGESEASFVNFSRLLTESEKTELIFKNHFLTIMFPVDRFAEMGPCSRTFFNETGFTCLQVLDLIYAFYQENMLGHEIEVAIHTDSRHADRLRSVYS---TAERGYVAFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 544
HSP 2 Score: 51.9878 bits (123), Expect = 1.757e-4
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 6 EVEVVNSKGCSRLLVN--SISPSVRLVGVQ----MSHDSAS-VSTSSTHPHAPFSGLVICVTGLSK 64
+VEV+NSKGCSRL V+ S PS R G+Q MS S+S V+ PFSG+VICVTGLSK
Sbjct: 9 KVEVINSKGCSRLFVDISSSFPSFR--GLQSFQPMSPASSSLVAEREVRSTRPFSGVVICVTGLSK 72
BLAST of XM_017375808.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5C2S2 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 263/436 (60.32%), Postives = 319/436 (73.17%), Query Frame = 0
HSP 2 Score: 55.8398 bits (133), Expect = 1.184e-5
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0
Match: A5C2S2 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 263/436 (60.32%), Postives = 319/436 (73.17%), Query Frame = 0
Query: 49 HAPFSGLVICVTGL------SKVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 478
H +GL + G VRL ESLY VKNVGENG+ D+ N L ++ EN C+P GM E+ KQS + + R+S RS+D LSG S+FID+D+ AEL+NK+ EAA GA LV+ W G NA++VVCEG S+ +Y+GHS+NLVTPLW+LKTAKE+ RLVH+S DLARQ+G +LENVQ+G+ +EE N++ D K SHE RQ + +LAK+GVR RR R MQ CQTPIRPI P+ LL+S+CWS+SEPT A+IYTESS + + SVF++A D KES ASF NF+R LTESEK +IFK HFLTIL P DRFAEMGP SR+FFS GFTCLQVLD+IYAFYQENM+ E+E AIHTDS HADRLRS+YSSKET E GY FKRIDFLGSRKSFEMLKRV GD+NSNVYEL+I+A
Sbjct: 131 HGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGC-NANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPXDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA 565
HSP 2 Score: 55.8398 bits (133), Expect = 1.184e-5
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHPHAPFSGLVICVTGLSK 64
VEV++SKGCSRLLV S + G++ + S+S + PFSGLVICVTGLSK
Sbjct: 11 VEVISSKGCSRLLVGISSSLPPMRGLKTFEPMSPASSSVGRSNGPFSGLVICVTGLSK 68
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6U698 | E-Value: 0.000e+0, PID: 61.91 | (uncharacterized protein LOC113707408 isoform X3 {... [more] |
| A0A5B7BXE9 | E-Value: 5.166e-5, PID: 64.30 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| F6H2U1 | E-Value: 0.000e+0, PID: 60.55 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6P6U5U0 | E-Value: 2.587e-6, PID: 64.34 | (uncharacterized protein LOC113707408 isoform X2 {... [more] |
| A0A6P6U4G7 | E-Value: 2.787e-6, PID: 64.34 | (uncharacterized protein LOC113707408 isoform X1 {... [more] |
| A0A438K8M6 | E-Value: 9.885e-4, PID: 57.20 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A068VG79 | E-Value: 2.458e-6, PID: 64.34 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1969... [more] |
| A0A2C9UAZ0 | E-Value: 0.000e+0, PID: 59.04 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A5J5BBW7 | E-Value: 1.757e-4, PID: 61.90 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A5C2S2 | E-Value: 1.184e-5, PID: 60.32 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |