Resource Type:
Polypeptide
Name:
XM_017375799.1
Identifier:
XM_017375799.1-protein
Sequence:
MGGGREVEVVNSKGCSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHPHA
PFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGL
KYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRD
DSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLIL
SGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTS
VGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSG
LAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQ
TPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNAN
VDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRS
FFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSK
ETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA
Sequence Length:
543
Sequence Checksum:
ef8556a51453933c8e288261dae9aca6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375799.1, derives from mRNA, XM_017375799.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BXE9 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 362/543 (66.67%), Postives = 433/543 (79.74%), Query Frame = 0
Match: A0A5B7BXE9 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 362/543 (66.67%), Postives = 433/543 (79.74%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLVGVQ----MSHDSAS-VSTSSTHPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDE-KESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
VEV+NSKGCSRL V+ IS S R G+Q MS S+S ++ PFSGLVICVTGLSK+ RKQVMD T RLGG+YS++LHP+CTHL+VQS HG K+EHALK+GS+NGLF+VTLGWF+DSVRRNVRL+ESLY VK+VGENG+ DD N L +YA TENYC+PVGM EH KQSD I + +R + + RS++ LSG SL++D DV AEL+ K+ EAA +GA ++ W G NASH+VCEG S+ KY+GHS+NLVTPLWVLKTAKEK V RLVHIS DLARQ+GT+L+N Q+G EE D DAL S +K SH+ R + NLAK+GVRKRR RRMQ CQTPIRPITP+ LL+S+CWS+SEPT A+IYT+S E+A + H SVF++A E +ES ASFVN++R LTESEK +IFKNHFLTILFPVDRFAEMGPCSR+FFSD+GFTCLQVLD+IYAFYQENM E+E+AIHTDS HADRLRS+YSSKETAE G + FKRIDFLGSRKSFEMLKRV G++NSNVYELLI+A
Sbjct: 10 VEVINSKGCSRLFVD-ISSSFR--GLQSFEPMSPASSSLIAEPVVRSTGPFSGLVICVTGLSKEARKQVMDATERLGGQYSTNLHPQCTHLVVQSFHGRKFEHALKHGSRNGLFVVTLGWFVDSVRRNVRLNESLYSVKSVGENGMHMDDLNRLVQYAGTENYCLPVGMHEHAKQSDMIEEPHLRFSEKVFKRSVESTLSGHSLYVDLDVSAELRRKVIEAAAGEGATSIDQWFVGC-NASHIVCEGPSIRKYLGHSNNLVTPLWVLKTAKEKHVQRLVHISADLARQVGTMLDNAQNGTYGEEIIGDNGPQDALCSKSKASHDERLKIVNLAKNGVRKRRGRRMQTCQTPIRPITPSGLLDSICWSISEPTSTASIYTDSFSAEDASEHHTSVFFDAKGGEGRESEASFVNYSRPLTESEKTELIFKNHFLTILFPVDRFAEMGPCSRTFFSDTGFTCLQVLDHIYAFYQENMLAHEIEVAIHTDSRHADRLRSVYSSKETAERGSVAFKRIDFLGSRKSFEMLKRVAGENNSNVYELLIRA 548
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067G254 ((Uncharacterized protein {ECO:0000313|EMBL:KDO73674.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 353/550 (64.18%), Postives = 429/550 (78.00%), Query Frame = 0
Match: A0A067G254 ((Uncharacterized protein {ECO:0000313|EMBL:KDO73674.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 353/550 (64.18%), Postives = 429/550 (78.00%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLLVNSISPSVRLV--GVQ----MSHDSASVSTSSTHP-HAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
MGGG VEVV+SKGCSRL + S+ PS+R + GVQ MS S+S+++ S P +APFSGLVICVTGLSK+ RKQVM+ T RLGG+YS DLHP+CTHL+VQS G K+EHALK+GS+NGL+IVTLGWF+DSVRRNVRL ESLY VK++ E+G+ D N L +A TEN C+P G+ E KQ + + + RDSNRSM+ LSG S+++D+DV EL+NK+ EAAT +GA LVN W G AS+VVCE SV KY+GHS+NLVTP+WVLKTAKEK V RLVHIS DLARQ+G +LEN+Q+G+A EE N DA K+S E RQ NLAK+GVR RR RRMQ CQTPIRP+TP+ LL+S+CWS+SEPT A+IYT+S E+ + H SVF++A D K+S ASF N TR LTESEK +IFKNHFLTILFPVDRFAEMGP SR++FSD+GFTCLQVLDYIY FYQE+MS EVE AIHTDS H+DRLR++Y+SKETAE GY+ F+RI+FLGSRKSFEMLKRV GD+NSNVYELL++A
Sbjct: 1 MGGGGRVEVVSSKGCSRLFLGSV-PSLRRLRGGVQSFESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEA-KQFNATGKHE-----RDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGC-GASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHISADLARQVGMMLENIQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRSRRMQTCQTPIRPLTPSSLLDSICWSISEPTSTASIYTDSFSGEDVNEHHPSVFFDAEADGKDSEASFANLTRMLTESEKSELIFKNHFLTILFPVDRFAEMGPSSRTYFSDNGFTCLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRLRAVYASKETAECGYVTFRRIEFLGSRKSFEMLKRVSGDNNSNVYELLLRA 542
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4WHM6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR66189.1}))
HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 347/544 (63.79%), Postives = 423/544 (77.76%), Query Frame = 0
Match: V4WHM6 ((Uncharacterized protein {ECO:0000313|EMBL:ESR66189.1}))
HSP 1 Score: 688.723 bits (1776), Expect = 0.000e+0
Identity = 347/544 (63.79%), Postives = 423/544 (77.76%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLV--GVQ----MSHDSASVSTSSTHP-HAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
VEVV+SKGCSRL + S+ PS+R + GVQ MS S+S+++ S P +APFSGLVICVTGLSK+ RKQVM+ T RLGG+YS DLHP+CTHL+VQS G K+EHALK+GS+NGL+IVTLGWF+DSVRRNVRL ESLY VK++ E+G+ D N L +A TEN C+P G+ E KQ + + + RDSNRSM+ LSG S+++D+DV EL+NK+ EAAT +GA LVN W G AS+VVCE SV KY+GHS+NLVTP+WVLKTAKEK V RLVHIS DLARQ+G +LEN+Q+G+A EE N DA K+S E RQ NLAK+GVR RR RRMQ CQTPIRP+TP+ LL+S+CWS+SEPT A+IYT+S E+ + H SVF++A D K+S ASF N TR LTESEK +IFKNH+LTILFPVDRFAEMGP SR++FSD+GFTCLQVLDYIY FYQE+MS EVE AIHTDS H+DRLR+ Y+SKETAE GY+ F+RI+FLGS KSFEMLKRV GD+NSNVYELL++A
Sbjct: 8 VEVVSSKGCSRLFLGSV-PSLRRLRGGVQSFESMSPASSSLASDSVLPSNAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEA-KQFNATGKHE-----RDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGC-GASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHISADLARQVGMMLENIQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRSRRMQTCQTPIRPLTPSSLLDSICWSISEPTSTASIYTDSFSGEDVNEHHPSVFFDAEADGKDSEASFANLTRMLTESEKSELIFKNHYLTILFPVDRFAEMGPSSRTYFSDNGFTCLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRLRAAYASKETAECGYVTFRRIEFLGSCKSFEMLKRVSGDNNSNVYELLLRA 543
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BBW7 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 349/548 (63.69%), Postives = 423/548 (77.19%), Query Frame = 0
Match: A0A5J5BBW7 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 349/548 (63.69%), Postives = 423/548 (77.19%), Query Frame = 0
Query: 6 EVEVVNSKGCSRLLVNSISPSVRLVGVQ----MSHDSAS-VSTSSTHPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQL-----DVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
+VEV+NSKGCSRL V+ S G+Q MS S+S V+ PFSG+VICVTGLSK+ RKQVMD T RLGG+YS +LHP+CTHL+VQS +G K+EHALK+G +NGLF+VTLGWF+DSVRRNVRL+ESLY V++VGENG+ +D N L +YA TEN C+PVG+ +H KQSD I + DV RSM+ LSG SLF+D DV EL++K+ EAA +GA L++ W G NASH+VCEG S+ KY+GHS+NLVTPLWVLKTAKEKRV RLVHIS DLARQ+GT+L+NVQ+G+ EE D A+ S +K SH+ R + NLAK+GVRKRR RRMQ CQTPI PITP+ LL+S+CWS+SEPT A+IYT+S E+ + H SVF++A + ES ASFVNF+R LTESEK +IFKNHFLTI+FPVDRFAEMGPCSR+FF+++GFTCLQVLD IYAFYQENM E+E+AIHTDS HADRLRS+YS TAE GY+ FKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 9 KVEVINSKGCSRLFVDISSSFPSFRGLQSFQPMSPASSSLVAEREVRSTRPFSGVVICVTGLSKEARKQVMDATERLGGQYSPNLHPQCTHLVVQSFNGRKFEHALKHGLRNGLFVVTLGWFVDSVRRNVRLNESLYSVRSVGENGMHMNDLNRLIQYAGTENSCLPVGLHDHTKQSDMIEEPHCFPEDV------FKRSMESTLSGHSLFVDLDVSTELRSKVIEAAAGEGATLLDQWFVGC-NASHIVCEGPSIRKYLGHSNNLVTPLWVLKTAKEKRVQRLVHISADLARQVGTMLDNVQNGM--EEIIGDNGPQYAVCSKSKASHDERIKIVNLAKNGVRKRRGRRMQTCQTPIHPITPSSLLDSICWSISEPTSTASIYTDSFSAEDGSEHHTSVFFDAKGEGGESEASFVNFSRLLTESEKTELIFKNHFLTIMFPVDRFAEMGPCSRTFFNETGFTCLQVLDLIYAFYQENMLGHEIEVAIHTDSRHADRLRSVYS---TAERGYVAFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 544
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U5U0 ((uncharacterized protein LOC113707408 isoform X2 {ECO:0000313|RefSeq:XP_027085521.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 348/556 (62.59%), Postives = 415/556 (74.64%), Query Frame = 0
Match: A0A6P6U5U0 ((uncharacterized protein LOC113707408 isoform X2 {ECO:0000313|RefSeq:XP_027085521.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 348/556 (62.59%), Postives = 415/556 (74.64%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK+ R QVM T++LGG+YS LHP+CTHL+VQS G K+EHALK+GSK GL +VTLGWF+DSVRRNVRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 1 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLGGEYSPHLHPQCTHLVVQSFSGRKFEHALKHGSKLGLSVVTLGWFVDSVRRNVRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 554
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6U4G7 ((uncharacterized protein LOC113707408 isoform X1 {ECO:0000313|RefSeq:XP_027085520.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 348/556 (62.59%), Postives = 415/556 (74.64%), Query Frame = 0
Match: A0A6P6U4G7 ((uncharacterized protein LOC113707408 isoform X1 {ECO:0000313|RefSeq:XP_027085520.1}))
HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 348/556 (62.59%), Postives = 415/556 (74.64%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK+ R QVM T++LGG+YS LHP+CTHL+VQS G K+EHALK+GSK GL +VTLGWF+DSVRRNVRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 5 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLGGEYSPHLHPQCTHLVVQSFSGRKFEHALKHGSKLGLSVVTLGWFVDSVRRNVRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 558
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KQA6 ((Uncharacterized protein {ECO:0000313|EMBL:KDP34009.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 340/552 (61.59%), Postives = 424/552 (76.81%), Query Frame = 0
Match: A0A067KQA6 ((Uncharacterized protein {ECO:0000313|EMBL:KDP34009.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 340/552 (61.59%), Postives = 424/552 (76.81%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLLV--NSISPSVRLVGVQMSHDSASVSTSS--THP-----HAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
MGG +VEVVNSKGCSRL V ++ PS R G+Q S + S +TSS + P PF+GLVICVTGLSK+ RKQVM+ T RLGG YS +LHP+CTHL+VQS G K+EHALK+GSKNGLF+VTLGWF+DSVRRNVRL ESLY +K VGEN + DD N L + EN C+PV + K+ D L +S+ R S +S++ +LSG+S++ID+D+ E++NK+ EAAT +GA ++ W G AS++VCEG SV +Y+GHS+NLVTPLWVLKTAKEK V RLV +S DL RQ+G +LEN Q+G+A +E NK+ DA + S+E RQ++ N AK+GVR RR RRMQ CQTPIRPITP+ LL+S+CWS+SEPT A+IYT+S E+ + H SVF++A D K+S ASF N TR LTESEK ++FKNHFLTILFP+DRF+EMGP SR+FFS++GFTCL+VLD+IYAFYQENMS E+E+AIHTDS HADRLRS+YSSKET+E GY+ FKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 1 MGG--KVEVVNSKGCSRLFVGFSASIPSFR--GLQ-SFEPMSPATSSVGSEPVVVRSSGPFAGLVICVTGLSKEARKQVMEATERLGGHYSPNLHPQCTHLVVQSFGGRKFEHALKHGSKNGLFVVTLGWFVDSVRRNVRLSESLYSLKTVGENDVRLDDLNRLVGFGGAENSCLPVS-INDAKKYDVTEALHKQSSGRSSTKSIEPVLSGNSMYIDSDISDEMRNKVYEAATREGATFLDRWFVGC-GASYIVCEGASVQRYLGHSNNLVTPLWVLKTAKEKHVQRLVRMSTDLTRQVGIMLENYQNGIAGQEINKENGPQDAKGLRSNASYEERQHIVNFAKNGVRSRRGRRMQTCQTPIRPITPSSLLDSICWSISEPTSTASIYTDSFSSEDVSEHHTSVFFDAKGDIKDSEASFANLTRPLTESEKTELVFKNHFLTILFPIDRFSEMGPSSRTFFSENGFTCLKVLDHIYAFYQENMSASEIEVAIHTDSRHADRLRSVYSSKETSELGYLIFKRIDFLGSRKSFEMLKRVTGDNNSNVYELLIRA 545
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5C2S2 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0
Identity = 336/556 (60.43%), Postives = 407/556 (73.20%), Query Frame = 0
Match: A5C2S2 (BRCT domain-containing protein {ECO:0000259|PROSITE:PS50172})
HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0
Identity = 336/556 (60.43%), Postives = 407/556 (73.20%), Query Frame = 0
Query: 7 VEVVNSKGCSRLLVNSISPSVRLVGVQMSHDSASVSTSSTHPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIV-------------------QSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
VEV++SKGCSRLLV S + G++ + S+S + PFSGLVICVTGLSK+ RKQVMD T RLGG+YS +LHP+CTHL+V S G K +HALK+GSKNGLF+VTLGWF+DSVRRNVRL ESLY VKNVGENG+ D+ N L ++ EN C+P GM E+ KQS + + R+S RS+D LSG S+FID+D+ AEL+NK+ EAA GA LV+ W G NA++VVCEG S+ +Y+GHS+NLVTPLW+LKTAKE+ RLVH+S DLARQ+G +LENVQ+G+ +EE N++ D K SHE RQ + +LAK+GVR RR R MQ CQTPIRPI P+ LL+S+CWS+SEPT A+IYTESS + + SVF++A D KES ASF NF+R LTESEK +IFK HFLTIL P DRFAEMGP SR+FFS GFTCLQVLD+IYAFYQENM+ E+E AIHTDS HADRLRS+YSSKET E GY FKRIDFLGSRKSFEMLKRV GD+NSNVYEL+I+A
Sbjct: 11 VEVISSKGCSRLLVGISSSLPPMRGLKTFEPMSPASSSVGRSNGPFSGLVICVTGLSKEARKQVMDATERLGGQYSPNLHPQCTHLVVFYDFMLCFETLSCGLFNTFYSFGGRKLDHALKHGSKNGLFVVTLGWFVDSVRRNVRLSESLYYVKNVGENGVRMDELNRLIGFSGAENSCLPAGMFENAKQSVMTEDPHLWFSGRESKRSVDSTLSGHSMFIDSDISAELRNKVVEAAARGGAMLVDQWFVGC-NANYVVCEGPSIQRYLGHSNNLVTPLWILKTAKERYAQRLVHMSADLARQVGMVLENVQNGIELEEMNRENGPQDTPCPRKKASHEERQEIVSLAKAGVRNRRARYMQTCQTPIRPINPSSLLDSICWSISEPTSTASIYTESSSVGDVSEHQTSVFFDAKGDGKESEASFANFSRLLTESEKAELIFKGHFLTILLPXDRFAEMGPSSRTFFSSKGFTCLQVLDHIYAFYQENMTLHEIEAAIHTDSRHADRLRSVYSSKETGERGYAIFKRIDFLGSRKSFEMLKRVSGDNNSNVYELVIRA 565
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VG79 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19691.1}))
HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 346/557 (62.12%), Postives = 412/557 (73.97%), Query Frame = 0
Match: A0A068VG79 ((Uncharacterized protein {ECO:0000313|EMBL:CDP19691.1}))
HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 346/557 (62.12%), Postives = 412/557 (73.97%), Query Frame = 0
Query: 1 MGGGREVEVVNSKGCSRLL--VNSISPSVRLVGVQMS--HDSASVSTSS--------THPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCH-GLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNR-SMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
MGGG +VEV++SKGCSRL+ +++ S+R G Q S + VS +S P PFSGLVICVTGLSK+ R QVM T++LGG+YS LHP+CTHL Q G K+EHALK+GSK GL +VTLGWF+DSVRRNVRL E+LY VK +GE G+ DD N L TE C+P G LE+ S+ + R+S R +M +LSG S +ID DV AELQ+K+ EAA+ +GA LV+ W G +ASHVVCEG SVGKY+GHS+N+VTPLWVLKTAKEKR+ RLVHIS DLARQ T ++ +Q+G E+ C DA S KVSHE RQ + NLAK VRKRR RMQ CQTP+RPITP+ LL+SVCWS+SEPT +A IYTESS E+A VF++A D KES ASFVN +R LTESEK +IFK+HFLTILFPVDRF+EMGPCSR+FFSD GFTCLQVLD+IYAFYQENMS EVE+A+HTDS HADRLRS+YSSK TAE GY+EFKRIDFLGSRKSFEMLKRV GD+NSNVYELLI+A
Sbjct: 1 MGGGGKVEVISSKGCSRLVAEISTSFSSLRGHGFQSSAMEPMSPVSVASGVDESGRKNRPRGPFSGLVICVTGLSKEARAQVMAATQKLGGEYSPHLHPQCTHLHFQPFFSGRKFEHALKHGSKLGLSVVTLGWFVDSVRRNVRLSETLYSVKTIGE-GVAADDLNRLVHNMGTEKSCLPFGSLEYTDNSNMTGGPQLHFPERESKRRNMSSLLSGYSFYIDADVSAELQSKVVEAASGEGANLVDQWYVGC-SASHVVCEGPSVGKYLGHSNNIVTPLWVLKTAKEKRLQRLVHISADLARQTATTIDAIQTGTCREKFGGSICLQDAPTSMLKVSHEERQKIINLAKDWVRKRRNCRMQTCQTPMRPITPSSLLDSVCWSISEPTSSATIYTESSSVEDANDQDTFVFFDAKADGKESEASFVNLSRPLTESEKSELIFKSHFLTILFPVDRFSEMGPCSRTFFSDKGFTCLQVLDHIYAFYQENMSATEVEVALHTDSRHADRLRSVYSSKTTAERGYLEFKRIDFLGSRKSFEMLKRVSGDNNSNVYELLIRA 555
BLAST of XM_017375799.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q3R5 ((DNA topoisomerase 2-binding protein like {ECO:0000313|EMBL:PSS01351.1}))
HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 336/546 (61.54%), Postives = 408/546 (74.73%), Query Frame = 0
Match: A0A2R6Q3R5 ((DNA topoisomerase 2-binding protein like {ECO:0000313|EMBL:PSS01351.1}))
HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 336/546 (61.54%), Postives = 408/546 (74.73%), Query Frame = 0
Query: 2 GGGREVEVVNSKGCSRLLVNSISPSVR----LVGVQMSHDSASVSTSSTHPHAPFSGLVICVTGLSKDGRKQVMDVTRRLGGKYSSDLHPKCTHLIVQSCHGLKYEHALKYGSKNGLFIVTLGWFMDSVRRNVRLDESLYGVKNVGENGILRDDSNGLSRYANTENYCIPVGMLEHFKQSDTINQLDVRSTVRDSNRSMDLILSGSSLFIDTDVPAELQNKIAEAATLQGAKLVNHWIGGGRNASHVVCEGTSVGKYIGHSDNLVTPLWVLKTAKEKRVPRLVHISVDLARQLGTILENVQSGLAVEERNKDTCSSDALKSGTKVSHEARQNMANLAKSGVRKRRVRRMQRCQTPIRPITPNRLLESVCWSVSEPTCAAAIYTESSGFENAGQDHASVFYNANVDEKESIASFVNFTRKLTESEKGAVIFKNHFLTILFPVDRFAEMGPCSRSFFSDSGFTCLQVLDYIYAFYQENMSKEEVELAIHTDSVHADRLRSMYSSKETAEHGYMEFKRIDFLGSRKSFEMLKRVPGDDNSNVYELLIKA 543
GGG VEV+ SKGC + +IS S R V + S S + T PFSGL+ICVTGLSK+ RKQV D T RLGG+YSS+LHP+CTHL+VQS G K+EHALK+G +NGL +VTLGWF+DSVRRNVRL ESLY VK+VGENG+L D+ N LS A +E +C+PV E KQ D L + S R+ + LSG SLFID D+ ELQ K+ AA ++GA V+ W G N SHVVCEG SV KYIGHS NLVTPLW+LKTAKE+R+ RLVH+S D+ARQ+G +L+N +G EE + D D+ S + SHE RQN+ NLAK+GVRKRR RRMQ CQTPIRPITP+ +L+S+CWS+SEPT A+IY +S E+A + V+++A D KES +SFVNF+R+L ESEK +I KNH LTILFPVDRFAEMGPCSR+FFSD+GFTCLQVLD+IYAFYQENMS +E+E+AIHTDS HADRLRS+YSSKE+A GY+ FKRIDFLGSR+SFEMLKRV GD+NSNVYELLI+A
Sbjct: 3 GGGGRVEVMKSKGCFGDI--NISSSFRGLRSFEAVMSTASSESAAVVGTTGGGPFSGLIICVTGLSKEARKQVKDATERLGGQYSSNLHPQCTHLVVQSYGGRKFEHALKHGLRNGLSVVTLGWFVDSVRRNVRLSESLYSVKSVGENGMLMDNLNQLSPLAGSETFCLPVSKQEISKQFDRALPLPEKG----SKRNGESTLSGLSLFIDLDISPELQRKVVNAAAVEGATFVDQWFVGC-NVSHVVCEGPSVRKYIGHSSNLVTPLWILKTAKEERLQRLVHMSADMARQVGIMLDNACNGTYKEEIHGDNYPQDSPSSRSNASHEERQNIVNLAKNGVRKRRCRRMQTCQTPIRPITPSSILDSICWSISEPTSTASIYLDSFSAEDASEHRTPVYFDAKGDGKESESSFVNFSRQLVESEKTELILKNHLLTILFPVDRFAEMGPCSRTFFSDTGFTCLQVLDHIYAFYQENMSAQEIEVAIHTDSRHADRLRSVYSSKESAVQGYVPFKRIDFLGSRRSFEMLKRVNGDNNSNVYELLIRA 541
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BXE9 | E-Value: 0.000e+0, PID: 66.67 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A067G254 | E-Value: 0.000e+0, PID: 64.18 | (Uncharacterized protein {ECO:0000313|EMBL:KDO7367... [more] |
| V4WHM6 | E-Value: 0.000e+0, PID: 63.79 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6618... [more] |
| A0A5J5BBW7 | E-Value: 0.000e+0, PID: 63.69 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6P6U5U0 | E-Value: 0.000e+0, PID: 62.59 | (uncharacterized protein LOC113707408 isoform X2 {... [more] |
| A0A6P6U4G7 | E-Value: 0.000e+0, PID: 62.59 | (uncharacterized protein LOC113707408 isoform X1 {... [more] |
| A0A067KQA6 | E-Value: 0.000e+0, PID: 61.59 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3400... [more] |
| A5C2S2 | E-Value: 0.000e+0, PID: 60.43 | BRCT domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A068VG79 | E-Value: 0.000e+0, PID: 62.12 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1969... [more] |
| A0A2R6Q3R5 | E-Value: 0.000e+0, PID: 61.54 | (DNA topoisomerase 2-binding protein like {ECO:000... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |