Query: 25 RQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYL--------------HPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIKFPLLVDIICSTYDSRFLFRSNNRLF 583
R Y PL+ A K DW AA+ +I K ++ I+EG ETALH+AA + V FV+K+V +M D+EI N +G+TAL FAAV GNV+IA LM+ KNS+LP++H P+ P+ AA G +M +YL PL T N + LL TCI++GLY A ++V + LA A D NG T LHVLA+ S+F G Q+G+W RII +S+ K +E Q A +L+ F+ H++ +D EIS + E++ LLF+AAE+GN F++ L+ +YPD IW+ + QSIFHIA+ HRH+ IFNLI+EIG++ L+AT +D D NNMLHLAA++AP KLN VSGAALQMQR L+WY V+ IV PSYR MKN++ +TPH++F HK LMK+GE+WMK T+ SC++VATLIATV +T AFTVPGG D S G P+LL++ FF VF++SE + M +SSTSILM LSILTSRY E DFL SLP+ LM+ TTLF+S+AAM+IAFCTT LS+ G + + +FA +PI+ + + L DII ST+ +RFLFRS RLF
Sbjct: 31 RDLYFEGCIPLHIAASKGDWKAADHIIRKNATLKNAPITEGGETALHVAAAAGHVFFVEKLVAEMAQSDLEIPNKKGHTALSFAAVTGNVQIATLMVVKNSKLPSIHDPEAKSPLYFAALSGHSDMAEYLFNQIELLGTPENQIEPLGTPAN-----QIELLNTCISAGLYGLALKIVQHHKELAVATDENGETPLHVLAQTPSAFAGGIQQGMWGRII-NSFPYCKGAQKEMLMQTKALELLKFLWRHVIGQQDLEISQIPENIVKLLFDAAELGNYNFLVELLRFYPDFIWKVDKNRQSIFHIAVKHRHENIFNLIYEIGTVKELIATYRDNGDDNNMLHLAASIAPPNKLNVVSGAALQMQRQLIWYKAVEKIVPPSYREMKNQNGKTPHNLFIANHKELMKEGEQWMKGTAKSCMLVATLIATVAYTTAFTVPGGNDNSTGAPILLNKRFFTVFSVSEAVSMLSSSTSILMFLSILTSRYAEHDFLVSLPIWLMIGFTTLFVSVAAMMIAFCTTFVLSYHQGLAQVLVPFSLFAFVPIVFISLNYSLFFDIIRSTFGTRFLFRSRKRLF 597
Query: 24 ERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDE-KATLLTTCIASGLYDAAFRMVHNDSTLAAAKDG-NGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIKFPLLVDIICSTYDSRFLFRSNNRLFQR 585
+R++YL +Y PL+ A LK DW AA+ +I++ P ++ +I+EG++TALH+AA V+F+KK+V++MD +E QN NTAL FAA GNVRIA+ M+ KN RLP++ GPQ P+ AA LG+++MV+YL L W+ E + LL TCI S LYDAA +V LA A+D N T L VLAR S+F +Q GLW II +S N+ + Q + +L+ + DH++ E S+V LLF AAE GN F++ L+ +YPD I + N + QSIFHIA+ +RH+ IFNLI+EIGS+ L+AT +D D NNMLHLAA LAP ++N VSGAALQMQR L WY V+ IV PSYR MKN++ Q PHD+F HK LMK+GEKWMK T++SC++VA LIAT+VFT +FTVPGG D + G P+LL+E FF VF++SE I M +SSTSILM LSILTS Y E DFL SLP+ LM+ +TTLF+SIAAM+IAFC T LS+ G + +L +FA +PI+ L+ + LLVDII ST+ SRFLF S RLF +
Sbjct: 5 QRERYLKKYVPLHIAALKGDWKAAKGIIEQNPELINAHITEGQDTALHVAAAVGHVHFLKKLVDQMDEHHLETQNNMRNTALSFAAATGNVRIAKYMVTKNPRLPSIRGPQAKSPLYYAALLGRRDMVEYLRGLPPF--WTPQEDQIELLNTCIISDLYDAALSIVKEQPQLALARDHLNKETPLDVLARKPSAFASGNQRGLWETIIDASSFWEGARNQ-KLMQTKSLELLQCLWDHVIPQEGT--GSIVP----LLFVAAERGNDIFLVQLLRFYPDFILKINNKKQSIFHIAVLNRHEHIFNLIYEIGSLKELIATYRDPEDDNNMLHLAAKLAPPNQINVVSGAALQMQRQLAWYKAVEKIVQPSYRDMKNRNGQAPHDLFMAEHKELMKEGEKWMKDTANSCMLVAALIATLVFTTSFTVPGGNDNTTGAPILLNESFFTVFSVSEQIAMLSSSTSILMFLSILTSCYAENDFLQSLPIRLMIGVTTLFISIAAMMIAFCATFILSYHHGLAHVLVLFSLFAFVPIVFILLNYFLLVDIIRSTFGSRFLFHSRKRLFPK 559
Query: 23 EERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYL------------RVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSF-LIKFPLLVDIICSTYDSRFLFRSNNRLF 583
E R +YL PLY+A LK DW AA VI+ +P+V+R I++G ETALHIAA +K ++FV+++V M+ +D+E+QN GNTALCFAA G VRIAE+MI KN RLP + G G+ P+ MAA LG +MV YL+ + + S +++ +L TC+++ LYD A ++ + LA A+DGNG TALHVLAR S+F Q LW +K S K +++ +Q A +LV + ++ +D EIS L+ LLF AAE GNT+F+I LI+ YPDLIW+ N +NQSIFH+A+ HRH IFN+++EIGSI L+ +D+ D NNMLHLAA +AP +LN VSGAALQMQR+L+W+ EV+ I+ PSY KN +TP +F E HK L++ GE WMK+T+S +VVATLIATV+F AAFTVPGG D + G+P+ + F VFAIS+ I + SSTSILM LSILTSRY E DFL SLP LM+ +T LF+SI M++AF T F+ F+ A +PI + +FAC+PI+ F +++PLL D+I STY SR LF+ +
Sbjct: 36 EARDQYLAICLPLYQAALKGDWKAANGVIEIFPTVIRSSITKGWETALHIAAAAKRIHFVEELVGLMNPEDLELQNSNGNTALCFAAAAGTVRIAEVMINKNERLPMIRGSHGMTPLYMAALLGHSDMVWYLYQKTKSEDLSDEDRIGILNTCVSTDLYDVALDILKHHPQLAVARDGNGETALHVLARKPSAFTSGSQ--LWNLHLKPSNTGPIDWGCSKICSNRKVGHDKSLKQAQAFELVRLLWKMMIKQDDSEISDLIRSPSRLLFVAAEHGNTKFLIELIEAYPDLIWKVNSQNQSIFHVAVLHRHAGIFNILYEIGSIKDLITAYRDE-DRNNMLHLAAKIAPPNQLNIVSGAALQMQRELVWFKEVEKIMQPSYVEKKNSKGKTPQALFTEEHKNLVEKGEAWMKNTASQSMVVATLIATVMFAAAFTVPGGNDNNTGIPMFRKDSSFMVFAISDAIALVTSSTSILMFLSILTSRYAENDFLESLPFKLMIGLTALFVSITTMMVAFGATFFIVFDRYAVWVPIAVALFACVPIILFATLQYPLLADVIHSTYGSRLLFQPRKHML 606
BLAST of XM_017365058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A7N2MWM1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL11p015433:mrna}))
Query: 20 YLSEERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIK-FPLLVDIICSTYDSRFLFRSNNRLFQ 584
Y R+ +L PLY+A +K +W AA+ VIDK P V+R I+ ETALHIAA +K FVK++V++M D+ +QN GNTA+CFAA G V IA++M+ KN RLP + G QG P+ MAA G +EMV YL+ ++T + S DEK +LL I++ LYD A ++ D +LA A+D G TALHVLAR S+ Q +W+R I S + + E+ Q AH+LV + +H+L +D EIS L+ + LLF+AAE+G+ EF+I LID YPDLIW+ +++N+S+FHIA+ +RH+ IFNLI EIG+I L+A KD+ + NN+LHLAA LAP +L VSGAALQMQR+LLW+ V+ IV PSY MKN D QTP D+F E HK L+K+GEKWMKST++SC++VATLIATVVF A FT+PGG D G P+ L + +F +F IS+ + +F+SS SI+ LSILTSRY E DFL SLP L+ ++ LF+SIA M+IA+ + + ++ +PI++ + AC+P+ F + F L D + STY SRFLF+ +RL+
Sbjct: 146 YDGVRRRDHLSVCVPLYQAAIKGEWKAAKLVIDKDPHVVRVRINRKLETALHIAAAAKRTAFVKELVQRMTEDDLALQNKDGNTAICFAAASGIVEIAKVMVEKNERLPMIRGKQGKTPLYMAALFGHREMVSYLYSVTTFGSLSRDEKISLLLVTISADLYDLALTILEKDQSLATAQDAKGETALHVLARKPSTIANTSQLSIWKRSINSCFKWIYHED---LMQTLAHQLVKKLWEHVLELQDSEISKLIREPSRLLFDAAELGSLEFLIILIDSYPDLIWKIDHKNRSLFHIAVLNRHENIFNLIFEIGAIKDLIAAYKDE-NNNNILHLAANLAPLSRLQIVSGAALQMQRELLWFKGVEKIVPPSYIKMKNSDNQTPKDLFTEKHKELLKEGEKWMKSTATSCMLVATLIATVVFAAIFTLPGGPDNKTGDPLFLGKSWFLIFVISDAVALFSSSASIVTFLSILTSRYAENDFLVSLPARLLFGLSALFVSIATMVIAYGAAISMIYDHKYVRIPIIIVLLACVPVTLFAWQHFHLWADTMRSTYWSRFLFQPKHRLYH 707
BLAST of XM_017365058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A7N2MYM4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL11p015595:mrna}))
Query: 24 ERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIK-FPLLVDIICSTYDSRFLFRSNNRLFQ 584
R+ +L PLY+A +K +W AA+ VIDK P V+R I+ ETALHIAA +K FVK++V++M +D+ +QN GNTA+CFAA G V IA++M+ KN RLP + G QG P+ MAA G +EMV YL+ ++T + S DEK +LL I++ LYD A ++ D +LA A+D G TALHVLAR S+ Q +W+R I S + + E+ + AH+LV + +H+L +D EIS L+ + LLF+AAE+G+ EF+I LID YPDLIW+ +++N+S+FHIA+ +RH+ IFNLI EIG+I L+A KD+ + NN+LHLAA LAP +L VSGAALQMQR+LLW+ V+ IV PSY MKN D QTP D+F E HK L+K+GEKWMKST++SC++VATLIATVVF A FT+PGG D G P+ L + +F +F IS+ + +F+SS SI+ LSILTSRY E DFL SLP L+ ++ LF+SIA M+IA+ + + ++ +PI++ + AC+P+ F + F L D + STY SRFLF+ +RL+
Sbjct: 150 RRRDHLSVCVPLYQAAIKGEWKAAKLVIDKDPHVVRVRINRKLETALHIAAAAKRTAFVKELVQRMTEEDLALQNKDGNTAICFAAASGIVEIAKVMVEKNERLPMIRGKQGKTPLYMAALFGHREMVSYLYSVTTFGSLSRDEKISLLLVTISADLYDLALTILEKDQSLATAQDAKGETALHVLARKPSTIANTSQLSIWKRSINSCFKWIYHED---LMRTLAHQLVKKLWEHVLELQDSEISKLIREPSRLLFDAAELGSLEFLIILIDSYPDLIWKIDHKNRSLFHIAVLNRHENIFNLIFEIGAIKDLIAAYKDE-NNNNILHLAANLAPLSRLQIVSGAALQMQRELLWFKGVEKIVPPSYIKMKNSDNQTPKDLFTEKHKELLKEGEKWMKSTATSCMLVATLIATVVFAAIFTLPGGPDNKTGDPLFLGKSWFFIFVISDAVALFSSSASIVTFLSILTSRYAENDFLVSLPARLLFGLSALFVSIATMVIAYGAAISMIYDHKYVRIPIIIVLLACVPVTLFAWQHFHLWADTMRSTYWSRFLFQPKHRLYH 707
BLAST of XM_017365058.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A6I9UQE1 ((ankyrin repeat-containing protein At5g02620 isoform X1 {ECO:0000313|RefSeq:XP_011096897.1}))
Query: 20 YLSEERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLW--RRIIKS--SYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIKFPLLVDIICSTYDSRFLFRSNNRLF 583
Y S +KY Q+ PL++A LK DW AAE+++ + S+ + I+EG ETALH+AAL +FV ++ +M+ D+EIQN +G+TALCFAA G+V IA+L++ KN +LP + G +GV P+ MA EM YL L WS D + LLTT I SGLY A +V TLA +D NG T L VLAR S+F G + GLW I + SY+++K + S Q AHKL+ ++ D ++ ED E + +V + L F AAE GN EF++ LI YPD +++ N SIFHIA+ R+ ++FNL+HE+ + L+AT DK DGNNMLHLAA L+PQ +L+ + GAALQMQR++LWY EV+ IV P YR MKN QTP+DIF E H+ LMK+GEK MK T+ SC++V LIATVVFT AFTVPGG + + G P+L ++ F VF ISE + +S TS+LM LSILTSRY E DFL+SLP L++ + LF+SI AM++AFCT L LS+E G LL FA +PIM ++K+ LLV ++ TY R+LFRSNNRLF
Sbjct: 21 YSSPACEKYFSQHVPLHKAALKGDWEAAEKLLSEDGSLAKASITEGGETALHVAALEGHASFVANLLHRMEGCDLEIQNNKGSTALCFAAAAGHVDIAKLLVQKNPKLPTISGFEGVTPLYMAVLQAHSEMAHYLFSLPAFEFWSTDHQVALLTTAIDSGLYGLAMSIVDQHKTLAVTEDSNGETPLQVLARKPSAFCGSSEGGLWDTSNIATTILSYMKLK--THKNSAQCDAHKLLGYLWDSVISQEDVETAQIVGNTSKLFFVAAESGNDEFLVELIRRYPDFLYKVNQSKHSIFHIAVLRRYVRVFNLMHELVGVKELIATYIDK-DGNNMLHLAAKLSPQNQLSIIPGAALQMQREVLWYKEVEKIVQPLYRDMKNNAGQTPYDIFLEEHEKLMKEGEKLMKQTAKSCMLVTMLIATVVFTTAFTVPGGYNNNTGAPILQNDKVFMVFPISEAVATLSSLTSMLMFLSILTSRYTEMDFLNSLPFWLVIGVGALFISIVAMMVAFCTCL-LSYEHGLVAATALLAFFASVPIMFIILKYELLVTVLRCTYGCRWLFRSNNRLF 584
Query: 16 LGSTYLSEERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIKFPLLVDIICSTYDSRFLFRSNNRLF 583
L S Y E +KY Q P+Y A L+ DW AA +I ++P+V+R I+EG ET LHIA K + FVK++V KM D+E+ N +GNTALCFAAVDG V IA++M+ KN +LP + G GVKP+ MAA G+++MVK+L+ + V +W EK LLTTC+++ L D A ++ L AKD N TALHVLAR +S F +Q G+W R IK E S Q A KL ++ +I D +I++++++ P LLF AA GNTEF+I L+ +PDLIWQ + +NQ+IFH+A+ +R ++IFNL+HEIGS G ++AT++D+ +GNNMLHLAA AP +SGAALQMQ ++LW+ EV+ V P YR MKN D +TP D+F E HK LMK+ +KW+K ++S ++ ATLIATV+FTAAFTVPGG + P+ L++ F V +IS G+ + S+ S LM SIL+SRY E+DFL SLPL L+L + TLF+S+A M++AFCTT F S + G + ++ + + ++ L+K PLL+DII ST+ +R LF RLF
Sbjct: 29 LRSPYTIEAIEKYYNQCLPIYNAALEGDWEAANSIIKQHPTVVRARITEGWETVLHIATTGKHIRFVKELVAKMTRSDLEMTNRRGNTALCFAAVDGTVAIAKVMVDKNDKLPEICGGNGVKPLYMAALSGKRDMVKFLYERTKVADWKECEKVKLLTTCVSTYLLDTALTLIEEYPRLTVAKDNNEETALHVLARKASIFAARNQPGIWSRFIKC----------ENSMQTLALKLTNSLIKNIFDLHDLDITNIIKEAPKLLFAAAYSGNTEFLIRLLRGFPDLIWQSDQKNQTIFHVAVLNRDERIFNLLHEIGSAGKVIATQRDR-NGNNMLHLAANFAPP---CNISGAALQMQHEILWFKEVEKNVQPLYREMKNSDGKTPQDLFTENHKELMKEAKKWVKDIANSSIIFATLIATVIFTAAFTVPGGTNDKSDTPIFLNKRLFGVLSIS-GVALSFSTISTLMFSSILSSRYTERDFLRSLPLKLVLGMMTLFISMATMMVAFCTTFFSSDQHGLVWINVVFTLIVPVLVVYVLLKCPLLLDIIRSTHRTRTLFWPCKRLF 581
Query: 89 MDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHP----LSTVVNW-----SIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVE-DVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIKFPLLVDIICSTYDSRFLFRSNNRLF 583
M D+ IQN +G+TAL FAA GNV+IA+LM+ KNS+LP++ GP+ P+ AA G +M +YL L T N + ++ LL TCI++GLY A ++V + LA A+D NG T LHVLA+ +F G Q+G+W RII +S+ K +E Q A +L+ F+ H++ D EIS ++ +V LLF AAE+GN F++ L+ +YPD IW+ + QSIFHIA+ HRH+ IFNLI+EIG++ L+AT +D D NNMLHLAA++AP +LN VSGAALQMQR L+WY V+ IV PSYR MKN++ +TPH++F HK LMK+GE+WMK T+ SC++VATLIATV +T AFTVPGG D S G P+LL++ FF VF++SE + M +SSTSILM LSILTSRY E DFL SLP+ LM+ TTLF+S+AAM+IAFCTT LS+ G + + +FA +PI+ + + LL DII ST+ +RFLFRS RLF
Sbjct: 1 MAQSDLGIQNKKGHTALSFAAATGNVQIAKLMVGKNSQLPSIKGPEAKSPLYFAALSGHSDMAEYLFNQIELLGTPENQIELLGTPAKQIELLNTCISAGLYGLALKIVEHHEELAVARDKNGETPLHVLAQTPLAFAGGIQQGMWGRII-NSFPYCKGAQKEMLMQTKALELLKFLWSHVIGQPDLEISQMITTNVVQLLFVAAELGNYNFLVELLRFYPDFIWKVDKNRQSIFHIAVKHRHENIFNLIYEIGTVKELIATYRDNGDDNNMLHLAASIAPPNQLNVVSGAALQMQRQLIWYKAVEKIVPPSYREMKNQNGKTPHNLFIANHKELMKEGEQWMKGTAKSCMLVATLIATVAYTTAFTVPGGNDNSTGAPILLNKRFFTVFSVSEAVSMLSSSTSILMFLSILTSRYAEHDFLVSLPIWLMIGFTTLFVSVAAMMIAFCTTFVLSYHQGLAQVLVPFSLFAFVPIVFISLNYSLLFDIIRSTFGTRFLFRSRKRLF 504
Query: 23 EERQKYLYQYQPLYRAILKNDWTAAEEVIDKYPSVLRDYISEGKETALHIAALSKDVNFVKKIVEKMDAQDMEIQNGQGNTALCFAAVDGNVRIAELMIAKNSRLPNLHGPQGVKPIDMAASLGQKEMVKYLHPLSTVVNWSIDEKATLLTTCIASGLYDAAFRMVHNDSTLAAAKDGNGLTALHVLARLSSSFNGVHQEGLWRRIIKSSYLRVKEENEEQSQQVYAHKLVYFILDHILLNEDCEISSLVEDVPTLLFEAAEVGNTEFVIALIDYYPDLIWQENYRNQSIFHIAISHRHQKIFNLIHEIGSIGSLLATRKDKIDGNNMLHLAATLAPQEKLNKVSGAALQMQRDLLWYMEVQSIVGPSYRVMKNKDAQTPHDIFKETHKGLMKDGEKWMKSTSSSCLVVATLIATVVFTAAFTVPGGVDTSVGVPVLLDEPFFKVFAISEGIGMFASSTSILMLLSILTSRYQEKDFLHSLPLMLMLAITTLFLSIAAMIIAFCTTLFLSFEDGATLLPILLGVFACIPIMSFLIK-FPLLVDIICSTYDSRFLFRS-NNRLF 583
E R+ +L PLY+A +K DW AA+ +I K V+R I++ +ETALHIAA +K FV ++V M +D+ + N NTALCFAA G IAE+M+ +N LP + G V P++MAA G + MV YL+ ++ S DE+ +LL + I++ LYD A +++ +LA +D NG TALHVLAR S+ Q G+W+R I S + K + + AH+LV + +H+L +D EIS L+ + LLF+AAE+GN EF+I LI YPDLIW+ + +S+FHIA+ +RH+ IFNLI+EIG+I L+A KD NN+LHLA LAP +L+ VSGAALQMQR+LLW+ V+ IV PSY MKN + +TP D+F E H L+K GEKWMKST+SSC++VATLIATVVFTA FT+PGG + GVP L + +F +F IS+ + +F+SS SI+M LSILTSRY E DFL SLP LM + TLF+SIA M+IAF T + + ++ + ++ V AC+ + F + F L D I STY SRFLF+ +RL+
Sbjct: 11 ERRKDHLSLCVPLYQAAIKGDWNAAKAIIAKDSGVVRVGINKKRETALHIAAAAKRTGFVMELVNHMTKEDLALINKDDNTALCFAAASGIKEIAEVMVRRNEELPLIRGKMNVTPLNMAAMFGHRNMVSYLYGVTPFEELSPDEQISLLLSTISADLYDLALKILERKPSLALTRDANGDTALHVLARKPSTIANKRQLGIWKRCINSCF---KGIYHKDLMRTLAHQLVEKLWEHVLQQQDSEISELIREPSKLLFDAAELGNLEFLIILIRSYPDLIWKVDKNTRSLFHIAVLYRHETIFNLIYEIGAIKDLIAAYKDD-KKNNILHLAGNLAPPCRLHIVSGAALQMQRELLWFKAVEKIVPPSYTKMKNSNGKTPKDLFTEEHNELLKVGEKWMKSTASSCMLVATLIATVVFTAVFTLPGGQNNETGVPTFLRKKWFLIFVISDSVALFSSSASIIMFLSILTSRYAENDFLISLPARLMFGLLTLFISIATMVIAFGTAINMIYDHKFVWIHSVIAVLACVSVTLFAWQHFQLWADTIRSTYWSRFLFQPFKHRLY 569
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.
There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.
LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.
Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.
RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.
The NCBI Sequence report lists the correspondences between the various naming methods
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
