Resource Type:
Polypeptide
Name:
XM_017374710.1
Identifier:
XM_017374710.1-protein
Sequence:
MFRRSVLGIKQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSD
PSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDDKSGSG
DQHRQVSTEQGQNTETAESLKDTIDVNTSSKSKDSSNSQAALPPGSSQPD
VSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPGEQHEPV
DTTVVVTHANEVPKEVELNKPTQQTHITALEDNKGNSKEQSIALLNEYHL
LDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKR
QAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKV
KAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASE
KASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALS
KGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQK
FDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLIN
RVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTF
LHSYATAASLS
Sequence Length:
611
Sequence Checksum:
5ce1e79bffa3a4e022a336ddbd26e36a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374710.1, derives from mRNA, XM_017374710.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9C7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53339.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 386/650 (59.38%), Postives = 475/650 (73.08%), Query Frame = 0
Match: A0A5B7A9C7 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53339.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 386/650 (59.38%), Postives = 475/650 (73.08%), Query Frame = 0
Query: 1 MFRRSVLGI---KQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDD-KSGSGDQHRQVSTEQGQNTETAESLKDTIDVNTSSKSKDSS----------NSQAALP--------PGSSQPDVSPISDYK--------------LASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVEL-NKPTQQTHITAL-EDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L + + + RIPTR TQIP YL +RK+FS AS+ NA SG+ +P+ SGS +SK VIGS+ALG A + AYQTGYLD+ LV EQH+ + K+ S ++ S +++E + L++ + +SK SS ++ + LP G SQ V +S+ + L SS QSS +D STN T E++ KSP++ P EQ V+ T ++T AN +PKE E+ + P Q L ED N EQ +LL+ Y+L DK EETSATS E KD G ++D DVH++KDG+L+LDFLQAIHAAEKRQA LDA F EEKRI+KEKYEKEL+DA A+ELMYAE A+LDK+LNKE+VKAAAALKSL+EKLEE+ + ELEQKEAEA L+LKK +EL KAELASAIASEKASQIEKM EA+L+I+ALC AFYA+S+EARQSHS++KL +G LA++DALSKGLPIQ EI+ALH YLEGI+KDSLLD+VLSS PEETR GTDTLLQLN KFDALKGTLRHFSLIPPGGGGIL HSLA VASLLKV+E D+SGDGIESLINRVESFLA+GKL EAADTLEDG+KGS+A+ +V DWV++ARNRAITEQ+LT L SYAT+ SL+
Sbjct: 1 MLRRSILELSSRQSVRRIPTRITTQIPLYLSSRKEFSVASQQNAPKGSGSTGNPTDSGSYLSKIVIGSVALGAAVMTAYQTGYLDKVLVKEQHSALESAKTDSVNKDSLESLRSNEDSEDDKRLREQTVMPNIQESKVSSPNVEHAEKNTDTHSFLPHLEDSSRSEGESQFHVKDVSELRHEDDITPMQEKEKELPSSPQSSMTSDDESTNARTPLEESPEMKSPEMKPRIEQQGAVEITPIITQANAIPKENEMKSMPPQDLTTKYLPEDASVNGLEQPSSLLDAYYLRDKAEETSATSSNEHKDSIGVIEDMNDVHISKDGKLVLDFLQAIHAAEKRQAELDAHIFAEEKRIVKEKYEKELKDARAKELMYAEEVAMLDKDLNKERVKAAAALKSLQEKLEEKREMELEQKEAEAELKLKKIQELAKAELASAIASEKASQIEKMTEANLHINALCMAFYAQSKEARQSHSVHKLALGALALEDALSKGLPIQKEIDALHIYLEGIDKDSLLDLVLSSLPEETRKYGTDTLLQLNHKFDALKGTLRHFSLIPPGGGGILAHSLAHVASLLKVREVDQSGDGIESLINRVESFLAEGKLSEAADTLEDGVKGSQATEIVGDWVRQARNRAITEQALTLLQSYATSISLT 650
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9L1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53337.1}))
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 384/650 (59.08%), Postives = 472/650 (72.62%), Query Frame = 0
Match: A0A5B7A9L1 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53337.1}))
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 384/650 (59.08%), Postives = 472/650 (72.62%), Query Frame = 0
Query: 1 MFRRSVLGI---KQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDD-KSGSGDQHRQVSTEQGQNTETAESLKDTIDVNTSSKSKDSS----------NSQAALP--------PGSSQPDVSPISDYK--------------LASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVEL-NKPTQQTHITAL-EDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L + + + RIPTR TQIP YL +RK+FS AS+ NA SG+ +P+ SGS +SK VIGS+ALG A + AYQTGYLD+ LV EQH+ + K+ S ++ S +++E + L++ + +SK SS ++ + LP G SQ V +S+ + L SS QSS +D STN T E++ KSP++ P EQ V+ T ++T AN +PKE E+ + P Q L ED N EQ +LL+ Y+L DK EETSATS E KD G ++D DVH++KDG+L+LDFLQAIHAAEKRQA LDA F EEKRI+KEKYEKEL+DA A+ELMYAE A+LDK+LNKE+VKAAAALKSL+EKLEE+ + ELEQKEAEA L+LKK +EL KAELASAIASEKASQIEKM EA+L+I+ALC AFYA+S+EARQSHS++KL +G LA++DALSKGLPIQ EI+ALH YLEGI+KDSLLD+VLSS PEETR GTDTLLQLN KFDALKGTLRHFSLIPPGGGGIL HSLA VASLLKV+E D+SGDGIESLINRVESFLA+GKL EAADTLE+ +KGS+A+ +V DWV ARNRAITEQ+LT L SYAT+ SL+
Sbjct: 1 MLRRSILELSSRQSVRRIPTRITTQIPLYLSSRKEFSVASQQNAPKGSGSTGNPTDSGSYLSKIVIGSVALGAAVMTAYQTGYLDKVLVKEQHSALESAKTDSVNKDSLESLRSNEDSEDDKRLREQTVMPNIQESKVSSPNVEHAEKNTDTHSFLPHLEDSSRSEGESQFHVKDVSELRHEDDITPMQEKEKELPSSPQSSMTSDDESTNARTPLEESPEMKSPEMKPRIEQQGAVEITPIITQANAIPKENEMKSMPPQDLTTKYLPEDASVNGLEQPSSLLDAYYLRDKAEETSATSSNEHKDSIGVIEDMNDVHISKDGKLVLDFLQAIHAAEKRQAELDAHIFAEEKRIVKEKYEKELKDARAKELMYAEEVAMLDKDLNKERVKAAAALKSLQEKLEEKREMELEQKEAEAELKLKKIQELAKAELASAIASEKASQIEKMTEANLHINALCMAFYAQSKEARQSHSVHKLALGALALEDALSKGLPIQKEIDALHIYLEGIDKDSLLDLVLSSLPEETRKYGTDTLLQLNHKFDALKGTLRHFSLIPPGGGGILAHSLAHVASLLKVREVDQSGDGIESLINRVESFLAEGKLSEAADTLEESVKGSQAAEIVGDWVWCARNRAITEQALTLLQSYATSISLA 650
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ABR8 ((Putative MICOS complex subunit MIC60 isoform X1 {ECO:0000313|EMBL:MPA53338.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 381/647 (58.89%), Postives = 469/647 (72.49%), Query Frame = 0
Match: A0A5B7ABR8 ((Putative MICOS complex subunit MIC60 isoform X1 {ECO:0000313|EMBL:MPA53338.1}))
HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 381/647 (58.89%), Postives = 469/647 (72.49%), Query Frame = 0
Query: 4 RSVLGI---KQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDD-KSGSGDQHRQVSTEQGQNTETAESLKDTIDVNTSSKSKDSS----------NSQAALP--------PGSSQPDVSPISDYK--------------LASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVEL-NKPTQQTHITAL-EDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
RS+L + + + RIPTR TQIP YL +RK+FS AS+ NA SG+ +P+ SGS +SK VIGS+ALG A + AYQTGYLD+ LV EQH+ + K+ S ++ S +++E + L++ + +SK SS ++ + LP G SQ V +S+ + L SS QSS +D STN T E++ KSP++ P EQ V+ T ++T AN +PKE E+ + P Q L ED N EQ +LL+ Y+L DK EETSATS E KD G ++D DVH++KDG+L+LDFLQAIHAAEKRQA LDA F EEKRI+KEKYEKEL+DA A+ELMYAE A+LDK+LNKE+VKAAAALKSL+EKLEE+ + ELEQKEAEA L+LKK +EL KAELASAIASEKASQIEKM EA+L+I+ALC AFYA+S+EARQSHS++KL +G LA++DALSKGLPIQ EI+ALH YLEGI+KDSLLD+VLSS PEETR GTDTLLQLN KFDALKGTLRHFSLIPPGGGGIL HSLA VAS LKV+E D+SGDGIESLINRVESFLA+GKL EAADTLE+ +KGS+A+ +V DWV ARNRAITEQ+LT L SYAT+ SL+
Sbjct: 27 RSILELSSRQSVRRIPTRITTQIPLYLSSRKEFSVASQQNAPKGSGSTGNPTDSGSYLSKIVIGSVALGAAVMTAYQTGYLDKVLVKEQHSALESAKTDSVNKDSLESLRSNEDSEDDKRLREQTVMPNIQESKVSSPNVEHAEKNTDTHSFLPHLEDSSRSEGESQFHVKDVSELRHEDDITPMQEKEKELPSSPQSSMTSDDESTNARTPLEESPEMKSPEMKPRIEQQGAVEITPIITQANAIPKENEMKSMPPQDLTTKYLPEDASVNGLEQPSSLLDAYYLRDKAEETSATSSNEHKDSIGVIEDMNDVHISKDGKLVLDFLQAIHAAEKRQAELDAHIFAEEKRIVKEKYEKELKDARAKELMYAEEVAMLDKDLNKERVKAAAALKSLQEKLEEKREMELEQKEAEAELKLKKIQELAKAELASAIASEKASQIEKMTEANLHINALCMAFYAQSKEARQSHSVHKLALGALALEDALSKGLPIQKEIDALHIYLEGIDKDSLLDLVLSSLPEETRKYGTDTLLQLNHKFDALKGTLRHFSLIPPGGGGILAHSLAHVASWLKVREVDQSGDGIESLINRVESFLAEGKLSEAADTLEESVKGSQAAEIVGDWVWCARNRAITEQALTLLQSYATSISLA 673
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAU2 ((MICOS complex subunit mic60 like {ECO:0000313|EMBL:PSR88101.1}))
HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 339/654 (51.83%), Postives = 448/654 (68.50%), Query Frame = 0
Match: A0A2R6PAU2 ((MICOS complex subunit mic60 like {ECO:0000313|EMBL:PSR88101.1}))
HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 339/654 (51.83%), Postives = 448/654 (68.50%), Query Frame = 0
Query: 1 MFRRSVLGI---KQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDD-KSGS-------------------GDQHRQVSTEQG-----------QNTETAESLKDTIDVNTSSKSKDSSNSQAALPPGS---SQPDVSPISDYKLASSAQ---SSEATDPGSTNNVTQDEKNHHSKSPDVNPGE-QHEPVDTTVVVTHANEVPKEVELNKPT--QQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L + + +R PTR TQIPSYL RK +S +S+ N SG+ P SGS++ K VIGSL LG A + AY +L++ V E+ + + K+G+ G+Q+ + E+ +N ET L D+ ++ SQ + + ++ D++PI +L+ S Q +S+ T P T+ E+ ++S +V P Q E ++T +++ AN + +E E+ + QQT I ED NS E+ +LL+EY+L DK +ET +T + KDL G ++S+DV ++KDG+L++DFLQAIH AEKRQA LDA F EEKR +KEKYEKEL+DA ARELMYAE AILDKELN+E+VKAAAALKSL E+LE +L+ ELEQK AEA L LKK +EL AEL +AIASEKASQIEKMAEA+L+I ALC AF+ARSEEARQSHS +KL +G LA++DALSKGLPIQ EI+AL++YL+ I KD LD+VLSS PEE R+ GTDT+LQL +FDALKGTLR FSL+PPGGGGIL +SLA +ASLLKV+EAD+SGDGIESL+NRVESFLA+GKL EAAD LE+G+KG++A+ V+ DW+++ RNRAITEQ+LT L SYAT+ SL+
Sbjct: 1 MLRRSILELSSRRSFTRNPTRITTQIPSYLSCRKQYSVSSEQNVPQGSGSTGKPPESGSSLPKIVIGSLTLGAALMTAY---HLNQRFVEERRSAVESSKTGTKDSVNLSISVKELQEDKHLGEQNVMSNIEESNVSSLNMEPAEENIETHSGLPHLDDLR-----RNEEESQLQVKDKTQLTTEEDIAPIQVKELSGSPQINVTSDETKPSGTSL----EEMADARSTEVKPNMVQQEAYESTPILSQANSILEENEMKSTSIQQQTAIDTKEDAHCNSGERPNSLLDEYYLKDKVQETISTLSDKHKDLVGATEESSDV-ISKDGKLVIDFLQAIHTAEKRQAELDAHIFAEEKRKIKEKYEKELKDARARELMYAEEAAILDKELNRERVKAAAALKSLREELEGKLRMELEQKGAEAELNLKKIQELAIAELTAAIASEKASQIEKMAEANLHIDALCMAFFARSEEARQSHSAHKLALGALALEDALSKGLPIQKEIDALYSYLKDIYKDPFLDLVLSSLPEEARSSGTDTVLQLKHQFDALKGTLRRFSLMPPGGGGILAYSLAHIASLLKVREADQSGDGIESLMNRVESFLAEGKLSEAADALENGVKGTQAAEVIGDWLRQVRNRAITEQALTLLQSYATSVSLT 641
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U964 ((MICOS complex subunit Mic60 {ECO:0000313|RefSeq:XP_011090456.1}))
HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 340/657 (51.75%), Postives = 445/657 (67.73%), Query Frame = 0
Match: A0A6I9U964 ((MICOS complex subunit Mic60 {ECO:0000313|RefSeq:XP_011090456.1}))
HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 340/657 (51.75%), Postives = 445/657 (67.73%), Query Frame = 0
Query: 1 MFRRSVLGI---KQISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDP-SGSG-----SNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNT--YDDKSGSGDQHRQVSTEQGQNTETAESLKDTIDVNTSSKSKDS------------SNSQAALPPGS-----------------SQPDVSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVELNK----PTQQTHITALEDN-KGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
MFRRS+L + +SR+P R TQIPSYL R+ F + KN P P SG G S + K + G LALG +AAY G LDR++ EQ + Y + + +GD++ + EQ A L + N+ S S +++Q +P S + +V + L ++ QSS +D ++ E++ KSP V P EQ++ ++T + T A++ P E++ PT+QT +++ K +S ++S +LL++Y+L DK+EE+ +S ++LKD+ ++D D +TKDG+L+LDFLQAIHAAE+RQA LDA F EEK+ MKEKYEKEL+DA RELMYAEREAILDKELNKE+VKAAAALKSL+EKLEE+LK ELEQKE E +LK+ +++ KAELA+AIA EKASQIEKMAEA+L+I+ALC AFYARSEE RQ+HS++KL +G LA++DAL KGLPI+ EI ALHT++EGI+ DSL+ +VLSS P++T+ GTDTL QLN KFD LKG LRHFSLIPPGGGGIL HSLA VAS LKVKE D SGDGIES+INRVES LA GKL EAADTLE+G+KGS+A+ VV DWV++ARNRAITEQ+LT L SYAT+ SL+
Sbjct: 1 MFRRSILQLASRSSVSRVPLRTTTQIPSYLSFRRAFCVSPKNE-------PIKPDSGGGAPEPESRLPKVLAGGLALGSVFLAAYYYGALDRYVGKEQQSMSKYTN-AWTGDKNTETPPEQQNAYLQARELSEAAAGNSPQGSDVSISDADHARQDVQTHAQLNVPEESIKTGEDKGHQAKDMAVLAPENVDHVEGRDLPTAPQSSMPSDDVTSKPA---EQSFDLKSPQVKPDDEQNKATESTPIFTAADKTPAEIDTKPVSPVPTEQTTTQDMQEAVKDDSIQKSSSLLDDYYLRDKSEESVTSSSSKLKDISSSMEDVYDGFITKDGKLVLDFLQAIHAAEERQAELDAHFFAEEKKAMKEKYEKELKDARVRELMYAEREAILDKELNKERVKAAAALKSLQEKLEEKLKTELEQKEMEVEQKLKQMQDMSKAELAAAIAREKASQIEKMAEANLHINALCMAFYARSEEVRQTHSVHKLALGALALEDALGKGLPIKKEIEALHTHVEGIDDDSLIALVLSSLPDDTQKYGTDTLSQLNHKFDVLKGMLRHFSLIPPGGGGILTHSLAHVASWLKVKEVDHSGDGIESIINRVESLLAQGKLCEAADTLENGVKGSQAAEVVNDWVKRARNRAITEQALTILQSYATSISLT 646
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TKX8 ((MICOS complex subunit MIC60-like {ECO:0000313|RefSeq:XP_027079173.1}))
HSP 1 Score: 585.874 bits (1509), Expect = 0.000e+0
Identity = 335/651 (51.46%), Postives = 440/651 (67.59%), Query Frame = 0
Match: A0A6P6TKX8 ((MICOS complex subunit MIC60-like {ECO:0000313|RefSeq:XP_027079173.1}))
HSP 1 Score: 585.874 bits (1509), Expect = 0.000e+0
Identity = 335/651 (51.46%), Postives = 440/651 (67.59%), Query Frame = 0
Query: 1 MFRRSVLGIKQI---SRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDDKSGSGDQHRQVSTEQGQNTE-TAESLKDTIDVNTS----------------------------------SKSKDSSNSQAALPPGSSQPDVSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVN-PGEQHEPVDTTVVVTHANEVPKEVELNK-PTQQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L + RIP + +QIPSYL +R+ SAAS++N G+ +D + SGS++ K ++G +ALG + AY TGYLDRF E H T + + VS EQ E + +SL D + T S+ ++ S+ P D++ I + +L SS S +D S N E + S DV +Q + V+ T T ++ E E N P Q + ++N ++ Q+ +LL++Y+L E + S ++ + L G +++S ++++DG+L++DFLQAIHAAEKRQA LDA F E+K ++KEKYEKELRDA ARELMYAEREAIL+KELNKE+VKAAAALKSL+EKLEE+ K ELE K+ EA LE+KK +EL KAELASAIASEKA+QIEKMAEA+++I+ALC AFYARSEEARQSHS++KL +G LA++DAL+KGLPIQ E+ ALHTY+EGI+KDSLLD+VLSS PEETR GTDT+LQLN KFDAL+GTLR +SLIP GGGGIL HSLA VAS LKV+EAD+SGDGIESL+NRV+SFLA+GKL EAAD LE+G+KG++A+ VV DWV++ARNRA+TEQ+LT L SYAT+ SL+
Sbjct: 1 MLRRSILRLSSCRLDGRIPIQITSQIPSYLSSRRAMSAASQHNEPQGPGS-ADKAESGSSLPKILVGGVALGAVVMGAYHTGYLDRFFAKEPHGTAESAKVAA-----VSEEQPDLREDSKKSLVDEDKIETIANLKYEQTSIPTPKMEHEEKSMSSDSDPSPREDLSRRQEESHFHMKDKPDLKSDDINHIQEEELPSSLGSGTQSDDLSANLGKPSEGSLTMNSSDVKVDSDQQKAVEMTPPFTRDDKAAAENETNSVPVQFNSQDSPKENLAGARRQTSSLLDDYNLKSDGNEPTLVSTSKSQGLPGTIEES---YISEDGKLVIDFLQAIHAAEKRQAELDAHTFAEDKIMLKEKYEKELRDARARELMYAEREAILNKELNKERVKAAAALKSLQEKLEEKHKMELEIKKNEAELEMKKLQELAKAELASAIASEKAAQIEKMAEANVHINALCMAFYARSEEARQSHSVHKLALGALALEDALTKGLPIQKEMEALHTYVEGIDKDSLLDLVLSSIPEETRINGTDTVLQLNHKFDALRGTLRRYSLIPLGGGGILAHSLAHVASWLKVREADQSGDGIESLMNRVDSFLAEGKLSEAADALENGVKGTQAAEVVGDWVRRARNRAVTEQALTLLQSYATSISLT 642
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TBN4 ((MICOS complex subunit MIC60-like {ECO:0000313|RefSeq:XP_027075545.1}))
HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 331/646 (51.24%), Postives = 437/646 (67.65%), Query Frame = 0
Match: A0A6P6TBN4 ((MICOS complex subunit MIC60-like {ECO:0000313|RefSeq:XP_027075545.1}))
HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 331/646 (51.24%), Postives = 437/646 (67.65%), Query Frame = 0
Query: 1 MFRRSVLGIKQI---SRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQHNTYDDKSGSGDQHRQVSTEQGQN--------TETAESLK-DTIDVNTS---------------------SKSKDSSNSQAALPPGSSQPDVSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVN-PGEQHEPVDTTVVVTHANEVPKEVELNK-PTQQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L + RIP + +QIPSYL +R+ SAAS++N G+ +D + S S++ K ++G +ALG + AY TGYLDRF E H T + + Q+ + ET +LK + + T S+ ++ S+ P D++ I + +L SS S +D S N E + S DV +Q + V+ T T + E E N P Q + ++N +++ Q+ +LL++Y+L E + S ++ + L G +++S ++++DG+L++DFLQAIHAAEKRQA LDA F E+K ++KEKYEKELRDA ARELMYAEREAIL+KELNKE+VKAAAALKSL+EKLEE+ K ELE K+ EA LE+KK +EL KAELASAIASEKA+QIEKMAEA+++I+ALC AFYARSEEARQSHS++KL +G LA++DAL+KGLPIQ E+ ALHTYLEGI+KDSLLD+VLSS PEETR GTDT+LQLN KFDAL+GTLR +SLIP GGGGIL HSLA VAS LKV+EAD+SGDGIESL+NRV+SFLA+GKL EAAD LE+G+KG++A+ VV DWV++ARNRA+ EQ+LT L SYAT+ SL+
Sbjct: 1 MLRRSILRLSSCRLDGRIPIQITSQIPSYLSSRRAMSAASQHNEPQGPGS-ADKAESRSSLPKILVGGVALGAVVMGAYHTGYLDRFFAKEPHGTAESAKVAAVSEEQLDLREDSKKSLVDEDKIETIANLKYEQTSIPTPKMEHEEKSMSSDSDPSPREDLSRRQEESHFHMKDKPDLKSDDINHIQEEELPSSLGSGTQSDDLSANLGKPSEGSLTMNSSDVKVDSDQQKAVEMTPPFTRDDTAAAENETNSVPVQFNSQDSPKENLASARRQTSSLLDDYNLKSDGNEPTLVSTSKSQGLPGTIEES---YISEDGKLVIDFLQAIHAAEKRQAELDAHTFAEDKIMLKEKYEKELRDARARELMYAEREAILNKELNKERVKAAAALKSLQEKLEEKHKMELEIKKNEAELEMKKLQELAKAELASAIASEKAAQIEKMAEANVHINALCMAFYARSEEARQSHSVHKLALGALALEDALTKGLPIQKEMEALHTYLEGIDKDSLLDLVLSSIPEETRINGTDTVLQLNHKFDALRGTLRRYSLIPLGGGGILAHSLAHVASWLKVREADQSGDGIESLMNRVDSFLAEGKLSEAADALENGVKGTQAAEVVGDWVRRARNRAVAEQALTLLQSYATSISLT 642
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1LXS9 ((Uncharacterized protein {ECO:0000313|EMBL:PWA53826.1}))
HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0
Identity = 343/651 (52.69%), Postives = 433/651 (66.51%), Query Frame = 0
Match: A0A2U1LXS9 ((Uncharacterized protein {ECO:0000313|EMBL:PWA53826.1}))
HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0
Identity = 343/651 (52.69%), Postives = 433/651 (66.51%), Query Frame = 0
Query: 1 MFRRSVLGIK-QISRIPTRAQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQTGYLDRFLVNEQ------------HNTYDD-KSGSGDQHRQVSTEQ--GQNTETAESLKDTIDVNTSSKSKDSSNSQAALPPGSSQPDVS--------PISDYK--LASSAQSSEATDPG--STNNVTQD-----EKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVELN--KPTQQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLD------GEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAAS 609
M RRS+L + + + R TQIP YL +RK+FS +S+ N S G P SGSN +K I SLAL AGI AYQ GYLD L EQ H Y K+ D H EQ G+N E+ S S D+S + P + +V PIS+ + + S D G +++N T D +++ +K+ +V P E HE V T + T V +E +N +P Q EDN+ + KE S LL+ Y + DK EE + S K++ +VK + DV + DG+L+LD L+AIHAAEKRQA LDA + EEKR MKEKYEKEL+DA ARELMYAERE ILDKEL+KEK+KAAAALKSL+EKLEE+ + E+++KE+E LEL K ++L KAEL +AIASEKASQIEKM EA+LNI+ALC AFYARSEEARQSHS++KL +G LA++DALSKGLPIQ EI+AL++ ++GI+KDSLL +V++S PE+T GTDT+LQLN KFD LKGTLRHFSL+PPGGGGIL HSLA +AS+LKVKEAD+SGDGIESL+NRVESFLADGKLLEAA+TLE GLK S+A+ VV DW+++ARNRAITEQ+LT L SYAT+ S
Sbjct: 1 MLRRSILEVSSRRQSLGPRITTQIPLYLSSRKEFSVSSQPNPSKGVGETGKPPNSGSNWTKIFIASLALSAAGITAYQNGYLDTLLPKEQNNGIHTINIPVVHEEYQQLKTLDNDAHDVEGVEQVAGKNEESEIS---------SPSVDDNSEKNVEIDPYYGRREVENQAEIKELPISEAHDTITGQEEKSPNLDNGISTSDNATFDSVETIKEDPATKNQEVEPTTEPHEGVQITSIPTEVAPVIEENVVNSEQPQQLGTTDMPEDNQNDDKE-SNPLLDAYLIRDKAEENATASTYVDKEVAEAVKGADDVKGTDDVDKSNDGKLVLDLLEAIHAAEKRQADLDAHIYSEEKRKMKEKYEKELKDARARELMYAERETILDKELHKEKLKAAAALKSLQEKLEEEFRMEIDRKESETELELNKLKDLAKAELTAAIASEKASQIEKMQEANLNINALCMAFYARSEEARQSHSVHKLALGALALEDALSKGLPIQKEIDALNSQIDGIDKDSLLGLVMASLPEDTLRNGTDTILQLNHKFDGLKGTLRHFSLMPPGGGGILAHSLAYMASVLKVKEADKSGDGIESLMNRVESFLADGKLLEAAETLEHGLKDSQAAEVVGDWIRQARNRAITEQALTLLQSYATSVS 641
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GAT6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7130054.1}))
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 337/660 (51.06%), Postives = 437/660 (66.21%), Query Frame = 0
Match: A0A834GAT6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7130054.1}))
HSP 1 Score: 576.244 bits (1484), Expect = 0.000e+0
Identity = 337/660 (51.06%), Postives = 437/660 (66.21%), Query Frame = 0
Query: 1 MFRRSVLGI---KQISRIPTR------------AQTQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMSKAVIGSLALGFAGIAAYQT------GYLDRF---------LVNEQHNTYDDKSGSGDQHRQVST---EQGQNTETAESLKDTI---------DVNTSSKSKDSSNSQAALPPGSSQPDVSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVELNKPT-QQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQK-----FDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAASLS 611
M RRS+L I + + R P R +T IP+Y+ RK +S AS+ NA SG+ P SGS++ K +IG+L LG + AY G L F V + D K + + V + E G +T + KD + D++ +S+ N + P + + D +P + +L + E+ PG++ T D K P+V EQHE V+ ++ N V +E E+ + QQ T + + G+ EQ +LLNEY+L DK EET +T + KDL ++DS D +++KDG+L++DFLQAIHAAEKRQA LDA F EEKR MKEKYEKEL+DA ARELMYAE AI+DKELN+E++KA AALKSL E+LE++L+ ELEQKE EA LK +EL KAELA+AIASEKAS IEKMAEA+L+I+ALC AFYARSEEARQSHS++KL +G LA++DALS+GLPI+ EI+ALHTYLEG KD LLD+VLSS P+ET++ GTDT+LQL K FD LKGTLRHFSLIPPGGGGIL HSLA VAS LKVKEAD+SGDGIESLINRVES LA+GKL EAAD+LE+G+KG++A+ V+ DW+++ RNRAITEQ+LTF+ +YATA SL+
Sbjct: 1 MLRRSILEISSRQSLRRNPARIAAQACHPISSFGRTNIPAYISCRKQYSVASEQNAPQGSGSTGKPPESGSSLPKIIIGTLTLGAVLMTAYHLNQRSIEGRLSIFESLKVGTKDPVELSKSNKDLKEDGVLRDKNVMSSIQESGGSTNMEPAGKDNVTHSDLPHPDDLSKHEESQFQVNYE---PQSTPKEDGAPAQEKELPTVTSDDESKTPGASLESTLDRK------PEVKSTIEQHEAVENIPILPQGNTVVEENEMKSISLQQQTATDIPEAHGDRVEQPKSLLNEYNLGDKVEETISTLSEKHKDLVDAIEDSNDAYLSKDGKLVVDFLQAIHAAEKRQAELDAHIFAEEKRKMKEKYEKELKDARARELMYAEETAIVDKELNRERLKATAALKSLREELEDKLRIELEQKETEAESRLKNVQELSKAELAAAIASEKASLIEKMAEANLHINALCMAFYARSEEARQSHSVHKLALGALALEDALSQGLPIEKEIHALHTYLEGDAKDPLLDLVLSSIPKETQSKGTDTILQLQHKASFLVFDTLKGTLRHFSLIPPGGGGILTHSLAHVASSLKVKEADQSGDGIESLINRVESLLAEGKLSEAADSLENGVKGTQAAEVINDWLRQVRNRAITEQALTFVRAYATAISLT 651
BLAST of XM_017374710.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251VFH6 ((Uncharacterized protein {ECO:0000313|EMBL:OTG34029.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 331/644 (51.40%), Postives = 428/644 (66.46%), Query Frame = 0
Match: A0A251VFH6 ((Uncharacterized protein {ECO:0000313|EMBL:OTG34029.1}))
HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 331/644 (51.40%), Postives = 428/644 (66.46%), Query Frame = 0
Query: 1 MFRRSVLGIKQISRIPTRAQ---TQIPSYLFARKDFSAASKNNASGESGAPSDPSGSGSNMS--KAVIGSLALGFAGIA-AYQTGYLDRFLVNEQHN------------------TYDDKSGSGDQHRQVSTEQGQNTETAESLKDTIDVNTS--------SKSKDSSNSQAALPPGSSQPDVSPISDYKLASSAQSSEATDPGSTNNVTQDEKNHHSKSPDVNPG-EQHEPVDTTVVVTHANEVPKEVELNK--PTQQTHITALEDNKGNSKEQSIALLNEYHLLDKTEETSATSHTELKDLDGEVKDSADVHVTKDGQLILDFLQAIHAAEKRQAALDAQKFGEEKRIMKEKYEKELRDAIARELMYAEREAILDKELNKEKVKAAAALKSLEEKLEEQLKKELEQKEAEAALELKKFEELGKAELASAIASEKASQIEKMAEADLNISALCTAFYARSEEARQSHSIYKLTVGTLAIQDALSKGLPIQNEINALHTYLEGIEKDSLLDVVLSSFPEETRTGGTDTLLQLNQKFDALKGTLRHFSLIPPGGGGILVHSLASVASLLKVKEADRSGDGIESLINRVESFLADGKLLEAADTLEDGLKGSEASGVVADWVQKARNRAITEQSLTFLHSYATAAS 609
M RRS+L + + TQIP YL +RK++S AS+ N S G+ PS SGS + K IG++ALG A + AYQTGYLD+ L EQ+N T + +G+ QV+ + Q +E + D + S ++ KD + LP + +SD+ +++S D S +++ + +K DV P EQHE V +T + T V +E + P QQ + N ++ +LL+ Y + D+ E+ ATS K++ V+ + D V K+G LILD L+AIHAAEKRQA LDA F EEKR+MKEKYEKEL+DA ARELMYAERE ILDKEL+KEK+KAAAALKSL+EKLEE+ + E+E+KE+EA +EL K ++L KAEL +AI EKASQIEK+ EA+LNI+ALC AFYARSEEARQSHS++KL +G LA++DALSKGLPIQ EI AL TY++G++KDSLL +V++S PE+T GTDT+LQLN KFD LKGTLRHFSL+PPGGGGIL HSLA +AS+LKVKE D SGDGIES+INRVES LADGKLLEAA+TLE+GLKGS+A+ VV DWV++ARNRAITEQ+LT L SYAT+ S
Sbjct: 1 MLRRSILQLSSRRSSGRISPRITTQIPLYLSSRKEYSVASQPNTSKVPGSTGKPSNSGSGSNVSKVFIGTIALGAAAVVTAYQTGYLDKLLTKEQNNDLNTHPIPVLHEEPQQSTTVNGDLPNGETVTQVAVQNVQESENSSPTVDDVGEKNSNFDPYYGRTEDKDKQSEIKQLPKSDA------VSDHDISTS-------DTASIDSIAPIKDEFSAKDQDVKPSTEQHEGVQSTSIPTEVAPVIEETAIKSEPPQQQETADVTKAIVSNDAKEPNSLLDSYLVEDQVEQNPATSSYPDKEVAAAVEGNDDDDVLKNGTLILDLLEAIHAAEKRQADLDAHIFSEEKRLMKEKYEKELKDARARELMYAERETILDKELHKEKIKAAAALKSLQEKLEEEFRMEIEKKESEAEMELNKLKDLAKAELLAAITREKASQIEKLQEANLNINALCMAFYARSEEARQSHSVHKLALGALALEDALSKGLPIQKEIEALKTYMDGVDKDSLLGLVMASLPEDTLENGTDTILQLNHKFDGLKGTLRHFSLLPPGGGGILAHSLAYIASVLKVKEGDSSGDGIESVINRVESLLADGKLLEAAETLENGLKGSQAAEVVGDWVRQARNRAITEQALTLLQSYATSVS 631
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A9C7 | E-Value: 0.000e+0, PID: 59.38 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5333... [more] |
| A0A5B7A9L1 | E-Value: 0.000e+0, PID: 59.08 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5333... [more] |
| A0A5B7ABR8 | E-Value: 0.000e+0, PID: 58.89 | (Putative MICOS complex subunit MIC60 isoform X1 {... [more] |
| A0A2R6PAU2 | E-Value: 0.000e+0, PID: 51.83 | (MICOS complex subunit mic60 like {ECO:0000313|EMB... [more] |
| A0A6I9U964 | E-Value: 0.000e+0, PID: 51.75 | (MICOS complex subunit Mic60 {ECO:0000313|RefSeq:X... [more] |
| A0A6P6TKX8 | E-Value: 0.000e+0, PID: 51.46 | (MICOS complex subunit MIC60-like {ECO:0000313|Ref... [more] |
| A0A6P6TBN4 | E-Value: 0.000e+0, PID: 51.24 | (MICOS complex subunit MIC60-like {ECO:0000313|Ref... [more] |
| A0A2U1LXS9 | E-Value: 0.000e+0, PID: 52.69 | (Uncharacterized protein {ECO:0000313|EMBL:PWA5382... [more] |
| A0A834GAT6 | E-Value: 0.000e+0, PID: 51.06 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7130... [more] |
| A0A251VFH6 | E-Value: 0.000e+0, PID: 51.40 | (Uncharacterized protein {ECO:0000313|EMBL:OTG3402... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |