XM_017366069.1

Resource Type: 
Polypeptide
Name: 
XM_017366069.1
Identifier: 
XM_017366069.1-protein
Sequence: 
MVMSDDCSGHLHEAASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSW
KITKSVIDQREAEAVNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQT
GCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPM
RRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIK
KVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVL
IATVAFAAAYTVPGGSKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVII
FLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRH
NQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFT
CHSSTQSLHEMNEKQGRIPQTKKDMSSPV
Sequence Length: 
429
Sequence Checksum: 
35f4d70063c6ab44f3a70a6980b94f9c
View location in JBrowse: 
DCARv2_Chr1:12073821..12075859+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017366069.1, derives from mRNA, XM_017366069.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z0R3 (PGG domain-containing protein {ECO:0000259|Pfam:PF13962} (Fragment))

HSP 1 Score: 460.685 bits (1184), Expect = 3.753e-155
Identity = 225/384 (58.59%), Postives = 297/384 (77.34%), Query Frame = 0
 
Query:   16 SSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEAVNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPR 398
            S +RVP W+ + +R+K+Y  A KLA FLI KDTSW+ T+S ID+ + +      P +  + ++ I+   K+AE   TPL+LAT++G  +IVE+IL+ +PQAVE+++ +GR ILH+AIKYRQ+ IF+ V +ME+P+ RLIRK D  GNSILHMVG K  + A E  E RSP+  LQ+DLLLFER++K    HF +H N  G+TAE+LF  + ++LR  ++EWLKRTAENCSIVAVLIATVAFAAAYT+PGG ++  G P+L+ + FF++FT++DVLSLTF LT+VI+FLSILTS FRLKDFK SLPQ+LMLG++ LILSVSMMM++FAAT+ILMIR+N+QWT IA+Y VAF PVT+FA  Y+PLYISL+ T +Y L KI   FPR
Sbjct:  281 SCFRVPLWEAIRNRKKRYDSAWKLAKFLISKDTSWEATESAIDKSKPKTHKYGGPSTASQDQEIISTPFKVAE---TPLILATKSGIIQIVEEILKRYPQAVEYVDGEGRNILHVAIKYRQIHIFDFVAKMEIPVMRLIRKIDNNGNSILHMVGIKAEDHAPE--EMRSPAMLLQEDLLLFERVQKFSTSHFIRHFNSKGQTAEKLFAVNNDKLRTDAKEWLKRTAENCSIVAVLIATVAFAAAYTIPGGPNQSTGYPILLKEPFFVVFTMTDVLSLTFALTSVIVFLSILTSPFRLKDFKQSLPQQLMLGVTLLILSVSMMMMSFAATIILMIRNNEQWTKIALYSVAFFPVTIFAVSYLPLYISLMKTFKYLLKKIGDAFPR 659
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A8R5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8526408.1}))

HSP 1 Score: 451.44 bits (1160), Expect = 6.844e-153
Identity = 223/391 (57.03%), Postives = 290/391 (74.17%), Query Frame = 0
 
Query:   12 HEAASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQR-EAEAVNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGGS-KDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFT 400
            H  +S +R PWW+ +    K+Y  A+KLA  LI KDTSWK T  +++ R   EA +   P  K+K+ +        + K  TPLLLAT+ G  EIV +IL+++PQAVEH+++ GR ILH+AIKYRQL+I +M+++  + M+RL+RKCD + NSILHMVG K  +  ++ T  RSP+ QLQ++ LLFER++ +   HF +H N++G TAE++F     +LR  ++EWLKRTAEN SIVAVLIATVAFAAAYTVPGGS ++ G+P+L+NQTFFIIFTI+DVLSLTF LT+VIIFLSILTS FRL DFK SLPQKLMLG +CLI SVSMMMLAFAAT+IL+I +  +WT +A+Y  AFLPV VFA  Y+PLY SLL TL+Y+L KI + F  F 
Sbjct:  173 HFDSSIWRFPWWEAVRKEVKRYDSALKLAKLLIEKDTSWKDTGDLVEDRIGGEASSSSDPSHKEKSSE--------SNKNYTPLLLATKHGSIEIVREILKIYPQAVEHVDDKGRTILHLAIKYRQLEILDMMEEKIISMKRLVRKCDKKNNSILHMVGLKAKSGWIDDT--RSPALQLQEEWLLFERVQNICSVHFFRHININGRTAEQVFANKNNKLRREAKEWLKRTAENSSIVAVLIATVAFAAAYTVPGGSDQNTGAPILLNQTFFIIFTITDVLSLTFALTSVIIFLSILTSPFRLIDFKQSLPQKLMLGFTCLIFSVSMMMLAFAATIILVIHNKGEWTKVALYTAAFLPVCVFAFSYLPLYSSLLRTLKYSLNKIVAIFSPFN 553
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A3Q7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524442.1}))

HSP 1 Score: 442.965 bits (1138), Expect = 3.242e-148
Identity = 232/402 (57.71%), Postives = 299/402 (74.38%), Query Frame = 0
 
Query:    2 VMSDDCSGHLHEAASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQRE--AEAVNEKQPESKKKTEKEIAMEKKMA-EKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGGSKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFT 400
            V +D  +    E +S +RV  W+ +   +++Y  A+KLA FLI KDTSWK T+ + D  E  + A   ++ ++ +KT K    E   A +   TPLLLAT+ GC EIV +IL  +PQAVEH++  GR ILHIAIK+RQ++I +MV++M++PM++L RK D  GNSILHMVGKK  N  V+  + +SP+ QLQDDLLLFERI+K+   HF +H N  G+TAEE+F  +  +LR +++EWLKRTAENCS+VAVLIATVAFAAAYTVPGGS D G P+L+NQ FF+IFTI+DVLSLTF LT+VI+FLSILTS FRL DFK SLPQKLMLG + LI SVSMMM AFAAT+ILMI   Q+WT +A+Y VAFLPV +FA  Y+PLY+SLL TL YT+ KI + FP+ +
Sbjct:  221 VSTDQDTTAREEDSSCWRVSLWEGVRKEKRRYDSALKLAKFLIEKDTSWKDTEQLADVEEESSSAPLHEEEDNGEKTPK--GNESSTANDTSPTPLLLATRHGCMEIVREILNKYPQAVEHVDGKGRTILHIAIKHRQMEILDMVEKMKIPMKKLARKSDDFGNSILHMVGKKAKNCMVD--DMQSPALQLQDDLLLFERIQKICSAHFFRHINKKGKTAEEIFAMNNNKLRGKAKEWLKRTAENCSLVAVLIATVAFAAAYTVPGGSSDTGVPILLNQPFFVIFTITDVLSLTFALTSVIVFLSILTSPFRLNDFKQSLPQKLMLGFTFLIFSVSMMMFAFAATIILMIHGKQEWTKVALYTVAFLPVCIFAFSYLPLYVSLLKTLEYTVNKIVAVFPKIS 618
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A3L1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8525030.1}))

HSP 1 Score: 441.425 bits (1134), Expect = 1.045e-147
Identity = 232/402 (57.71%), Postives = 298/402 (74.13%), Query Frame = 0
 
Query:    2 VMSDDCSGHLHEAASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQRE--AEAVNEKQPESKKKTEKEIAMEKKMA-EKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGGSKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFT 400
            V +D  +    E +S +RV  W+ +   +++Y  A+KLA FLI KDTSWK T+ + D  E  + A   ++ ++ +KT K+   E   A E   TPLLLAT+ GC EIV +IL  +PQAVEH++  GR ILHIAIK+RQ++I +MV++M++PM++L RK D  GNSILHMVGKK  N  V+  + +SP+ QLQDDLLLFERI+K+   HF +H N  G+TAEE+F  +   LR +++EWLKRTAENCS+VAVLIATVAFAAAYTVPGGS D G P+L+NQ FF+IFTI+DVLSLTF LT+VI+FLSILTS FRL DFK SLPQKLMLG + LI SVSMMM AFAAT+ILMI   Q+WT +A+Y VAFLPV +FA  Y+PLY+SLL T  YT+ KI + FP+ +
Sbjct:  221 VSTDQDTTAREEDSSCWRVSLWEGVRKEKRRYDSALKLAKFLIEKDTSWKDTEQLADVEEESSSAPLHEEEDNGEKTPKD--NESSTANETSPTPLLLATRHGCVEIVREILNKYPQAVEHVDGKGRTILHIAIKHRQMEILDMVEKMKIPMKKLARKSDDFGNSILHMVGKKAKNCMVD--DMQSPALQLQDDLLLFERIQKICSAHFFRHINKKGKTAEEIFAMNNNNLRGKAKEWLKRTAENCSLVAVLIATVAFAAAYTVPGGSSDTGVPILLNQPFFVIFTITDVLSLTFALTSVIVFLSILTSPFRLNDFKQSLPQKLMLGFTFLIFSVSMMMFAFAATIILMIHGKQEWTKVALYTVAFLPVCIFAFSYLPLYVSLLKTWEYTVNKIVAVFPKIS 618
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GS96 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5943580.1}))

HSP 1 Score: 440.269 bits (1131), Expect = 1.074e-147
Identity = 223/400 (55.75%), Postives = 288/400 (72.00%), Query Frame = 0
 
Query:   13 EAASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEAVN----EKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRF-TCHSSTQ 406
            E  S  +VP W+ +   + +Y+ A+KLA FLI +DTSW+ T+S IDQ + +        +    +   +K  A + +  E  +TPL LA + G  EIV++IL  +PQA+EHI++ GR ILH+AIKYRQ+ +F+ V +ME+PM RLIRK D  GNSILHMVG K   +   + +  SP+ QLQ+DLLLFERI+K+   HF KH N  G+TAE LF  +   L+  ++EWLKRT+ENCSIVAVLIATVAFAAAYTVPGG ++  G P+L++  FF+IFT++DVLSLTF LT+VI FLSILTSSFRLKDFK+SLPQ+LM+G++ LI SVSMMM AFAATVILMI + QQW  IA+Y VAF PVT+FA  Y+PLY+SL+ T  YTL KI   FPRF  C S T+
Sbjct:  194 EVESCCKVPLWEAIKREKTQYESALKLAKFLIARDTSWEATESAIDQSKPKTHKYVRITRDTSWEGGRQKAHAGQTRTIETAETPLFLAAKYGIIEIVKEILDTYPQAIEHIDDHGRNILHVAIKYRQIHVFDYVVKMEIPMTRLIRKIDNNGNSILHMVGIKA--DDFIRDDMPSPALQLQEDLLLFERIEKISMAHFTKHFNNKGQTAETLFAANNAPLQTDAKEWLKRTSENCSIVAVLIATVAFAAAYTVPGGPNQTTGYPLLLSHPFFVIFTLTDVLSLTFALTSVITFLSILTSSFRLKDFKHSLPQRLMIGVTLLIFSVSMMMFAFAATVILMISNKQQWERIALYSVAFFPVTIFAISYLPLYLSLMKTFEYTLKKIMDIFPRFQICKSQTK 591
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YY42 (PGG domain-containing protein {ECO:0000259|Pfam:PF13962} (Fragment))

HSP 1 Score: 440.654 bits (1132), Expect = 6.657e-147
Identity = 233/417 (55.88%), Postives = 302/417 (72.42%), Query Frame = 0
 
Query:   16 SSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEAVNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQ-MEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGGSKDD-GSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFTCHS----STQSLHEMNEKQGR----IPQTK 422
            S +RVP W+ + +R+K+Y  A KLA FLI KDTSW+ T+S +D+ + +      P    + ++ I+   K+AE   TPL+LAT++G  +IVE+IL+ +PQAVE+++ +GR ILH+AIKYRQ+ IF+ V   ME+PM RLIRK D +GNSILHMVG K      E+ + RSP+  LQDDLLLFE +K ++  HF  H N +G TAE+LF + K +LR  ++EWL RTAENCSIVAVLIATVAFAAAYTVPGGS +  G P+L+NQ FF++FT++DVLSLTF LT+V++FLSILTS FRLKDFK SLPQKLMLG++ LI SVSMMMLAFAAT+IL+IR+ +QWT IA+Y  AFLPVT+FA  Y+PLYISL+ T +Y L  I   FPR   H     ST S+   ++  G      PQT 
Sbjct:  283 SCFRVPLWEAIRNRKKRYDSAWKLAQFLISKDTSWEATESAMDKSKPKTHKYGGPSIASQDQEIISTPFKVAE---TPLILATKSGIIQIVEEILKRYPQAVEYVDGEGRNILHVAIKYRQMHIFDFVATTMEIPMMRLIRKTDNKGNSILHMVGIKADGHEAEE-DMRSPALLLQDDLLLFEHVKTILESHFINHLNSEGHTAEKLFGDSKAQLRADAKEWLHRTAENCSIVAVLIATVAFAAAYTVPGGSNETTGYPILLNQPFFVVFTLTDVLSLTFALTSVLVFLSILTSPFRLKDFKQSLPQKLMLGVTLLIFSVSMMMLAFAATIILLIRNEEQWTKIALYSAAFLPVTIFAFSYLPLYISLMKTFKYFLNNIGEAFPRCCFHKSQARSTPSIPTQSQASGSTCTPTPQTN 695
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LN92 (PGG domain-containing protein {ECO:0000259|Pfam:PF13962})

HSP 1 Score: 439.113 bits (1128), Expect = 1.344e-146
Identity = 219/419 (52.27%), Postives = 297/419 (70.88%), Query Frame = 0
 
Query:   16 SSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEAVNEKQPESKKKTEK----EIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFTCHSSTQSLHEMNEKQGRIPQTKKDMSSPV 429
            + + VP W+++ D++ +Y   ++LA FLI +DT+W+ T+S +D+ + +     +  S    ++        E    +  +TPL LAT++GC EIV  IL+++PQAVEH++++GR ILH+AIKYRQ+QIF++V++ME PM RLIRK D  GNSILHMVG K      E  + RSP+  LQ+DLLLFER+KK+   HF KH N  G TAE+LF  +  + R  ++EW+K TAENCSIVAVLIATVAFAAAYTVPGG +++ G P+L NQ FF +FT++DVLSL F LT+VI+FL+ILTSSFRLKDF+ SLPQKLM+G++ LILSVSMMM+AFAATVIL+IR+ ++WT +A+Y VAF PV +FA  Y+PLY+SL+ T  YTL KI    PR  C SS  S          IP +  + + P+
Sbjct:  251 TGWTVPLWEQLRDQKHRYDSVIELARFLIERDTTWEATESALDKSKPKTHRYGRTTSMGPQDQGQISTTGQETTTVDIAETPLFLATKSGCTEIVRGILEMYPQAVEHVDDEGRNILHVAIKYRQIQIFDIVEKMETPMTRLIRKIDNNGNSILHMVGIKATEAGHE--DMRSPALILQEDLLLFERVKKISATHFTKHYNAQGVTAEKLFAINNAQHRMDAKEWMKGTAENCSIVAVLIATVAFAAAYTVPGGPNQETGYPILENQPFFFLFTMTDVLSLAFALTSVILFLNILTSSFRLKDFRQSLPQKLMMGVTLLILSVSMMMVAFAATVILLIRNKEKWTRVALYSVAFFPVLIFAFSYLPLYVSLVKTFSYTLKKIRHVVPR--CDSSDPS----KTDGAVIPNSVSNSTYPI 661
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MUN5 (PGG domain-containing protein {ECO:0000259|Pfam:PF13962})

HSP 1 Score: 438.343 bits (1126), Expect = 2.180e-146
Identity = 214/396 (54.04%), Postives = 289/396 (72.98%), Query Frame = 0
 
Query:   14 AASSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEA-----VNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFTCHS 403
               S++VP W+++ D++ +Y   ++LA FLI +DT+W+ T+S +D+ + +       +   P+ + +            +  +TPL LAT++GC EIV  IL+++PQAVEH++++GR ILH+AIKYRQ+QIF++V++ME PM RLIRK D  GNSILHMVG K      E  + RSP+  LQ+DLLLFER+KK+   HF KH N  G TAE+LF  +  + R  ++EW+K TAENCSIVAVLIATVAFAAAYTVPGG +++ G P+L NQ FF +FT++DVLSL F LT+VI+FL+ILTSSFRLKDF+ SLPQKLM+G++ LILSVSMMM+AFAATVIL+IR+ ++WT +A+Y VAF PV +FA  Y+PLY+SL+ T  YTL KI    PR  C S
Sbjct:  236 GTGSWKVPLWEQLRDQKHRYDSVIELARFLIERDTTWEATESALDKSKPKTHRYGRTSSMGPQDQGQISATGQETTTTVDIAETPLFLATKSGCTEIVRGILEMYPQAVEHVDDEGRNILHVAIKYRQIQIFDIVEKMETPMTRLIRKIDNNGNSILHMVGIKATEAGHE--DMRSPALILQEDLLLFERVKKISATHFTKHYNAQGLTAEKLFAINNAQHRMDAKEWMKGTAENCSIVAVLIATVAFAAAYTVPGGPNQETGYPILENQPFFFLFTMTDVLSLAFALTSVILFLNILTSSFRLKDFRQSLPQKLMMGVTLLILSVSMMMVAFAATVILLIRNKEKWTRVALYSVAFFPVLIFAFSYLPLYVSLVKTFSYTLKKIRHVVPR--CDS 627
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7MU55 (PGG domain-containing protein {ECO:0000259|Pfam:PF13962})

HSP 1 Score: 437.573 bits (1124), Expect = 3.209e-146
Identity = 214/394 (54.31%), Postives = 289/394 (73.35%), Query Frame = 0
 
Query:   16 SSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEA-----VNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFTCHS 403
             S++VP W+++ D++ +Y   ++LA FLI +DT+W+ T+S +D+ + +       +   P+ + +            +  +TPL LAT++GC EIV  IL+++PQAVEH++++GR ILH+AIKYRQ+QIF++V++ME PM RLIRK D  GNSILHMVG K      E  + RSP+  LQ+DLLLFER+KK+   HF KH N  G TAE+LF  +  + R  ++EW+K TAENCSIVAVLIATVAFAAAYTVPGG +++ G P+L NQ FF +FT++DVLSL F LT+VI+FL+ILTSSFRLKDF+ SLPQKLM+G++ LILSVSMMM+AFAATVIL+IR+ ++WT +A+Y VAF PV +FA  Y+PLY+SL+ T  YTL KI    PR  C S
Sbjct:  235 GSWKVPLWEQLRDQKHRYDSVIELARFLIERDTTWEATESALDKSKPKTHRYGRTSSMGPQDQGQISATGQETTTTVDIAETPLFLATKSGCTEIVRGILEMYPQAVEHVDDEGRNILHVAIKYRQIQIFDIVEKMETPMTRLIRKIDNNGNSILHMVGIKATEAGHE--DMRSPALILQEDLLLFERVKKISATHFTKHYNAQGLTAEKLFAINNAQHRMDAKEWMKGTAENCSIVAVLIATVAFAAAYTVPGGPNQETGYPILENQPFFFLFTMTDVLSLAFALTSVILFLNILTSSFRLKDFRQSLPQKLMMGVTLLILSVSMMMVAFAATVILLIRNKEKWTRVALYSVAFFPVLIFAFSYLPLYVSLVKTFSYTLKKIRHVVPR--CDS 624
[Close]
BLAST of XM_017366069.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WNS5 ((Uncharacterized protein {ECO:0000313|EMBL:THG13677.1}))

HSP 1 Score: 437.958 bits (1125), Expect = 3.791e-146
Identity = 225/407 (55.28%), Postives = 289/407 (71.01%), Query Frame = 0
 
Query:   16 SSYRVPWWDEMVDRRKKYKEAVKLANFLIPKDTSWKITKSVIDQREAEA------------------VNEKQPESKKKTEKEIAMEKKMAEKQQTPLLLATQTGCFEIVEKILQVHPQAVEHINEDGRCILHIAIKYRQLQIFEMVQQMEVPMRRLIRKCDARGNSILHMVGKKVVNEAVEQTEKRSPSFQLQDDLLLFERIKKVIRPHFHKHTNVDGETAEELFVEHKEELRDRSQEWLKRTAENCSIVAVLIATVAFAAAYTVPGG-SKDDGSPVLINQTFFIIFTISDVLSLTFCLTAVIIFLSILTSSFRLKDFKNSLPQKLMLGISCLILSVSMMMLAFAATVILMIRHNQQWTSIAMYLVAFLPVTVFASIYMPLYISLLGTLRYTLVKIWSFFPRFTCHS 403
             ++ VP W+ +   ++K   A++LA FLI KDTSW+ TK V DQ E +                     +K P S + T K IA         +TPL LAT++GC EI ++I+Q++P AVEHI+  GR +LH+AIKYRQ++IF++V++MEVPMRRL+RK D   N+ILHMVGKK  +   +  E +S + QL+ D+LLFE +KK+   H  KH N DG TAEELF    ++L   ++EWLKRTAE+CS+VAVLIATVAFAAAYT+PGG ++  G P+L+NQ FF +FT++DVLSLTF LT+VIIFLSILTS FRLKDFK SLPQ LMLGI+ LI SVSMMMLAFAATVILMI + +QWT IA+Y  AFLPVT+FA  Y+PLYISL+ TL Y++ KI   FP+FT  S
Sbjct:  241 GNWEVPLWEAIRKEKEKNVMALRLAKFLITKDTSWRTTKRVEDQYEPKTHEYGEETSSLREEIEKENEEQKPPRSMETTNKRIA---------ETPLFLATKSGCVEIFKEIIQLYPWAVEHIDHKGRTVLHVAIKYRQIEIFKIVEKMEVPMRRLVRKIDHNHNTILHMVGKKRKDHMPQ--EMQSAALQLRKDMLLFEHVKKICPSHLTKHINSDGHTAEELFARKNKKLCHEAKEWLKRTAEHCSLVAVLIATVAFAAAYTIPGGPNQKTGIPLLLNQPFFAVFTMTDVLSLTFALTSVIIFLSILTSPFRLKDFKQSLPQNLMLGITFLIFSVSMMMLAFAATVILMIHNREQWTKIALYTAAFLPVTIFALSYLPLYISLMKTLNYSIKKITMIFPQFTGDS 636
Match NameStatsDescription
A0A5B6Z0R3E-Value: 3.753e-155, PID: 58.59PGG domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A5J5A8R5E-Value: 6.844e-153, PID: 57.03(Uncharacterized protein {ECO:0000313|EMBL:KAA8526... [more]
A0A5J5A3Q7E-Value: 3.242e-148, PID: 57.71(Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more]
A0A5J5A3L1E-Value: 1.045e-147, PID: 57.71(Uncharacterized protein {ECO:0000313|EMBL:KAA8525... [more]
A0A7J7GS96E-Value: 1.074e-147, PID: 55.75(Uncharacterized protein {ECO:0000313|EMBL:KAF5943... [more]
A0A5B6YY42E-Value: 6.657e-147, PID: 55.88PGG domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A2J6LN92E-Value: 1.344e-146, PID: 52.27PGG domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A6S7MUN5E-Value: 2.180e-146, PID: 54.04PGG domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A6S7MU55E-Value: 3.209e-146, PID: 54.31PGG domain-containing protein {ECO:0000259|Pfam:PF... [more]
A0A4V3WNS5E-Value: 3.791e-146, PID: 55.28(Uncharacterized protein {ECO:0000313|EMBL:THG1367... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.