Resource Type:
Polypeptide
Name:
XM_017374663.1
Identifier:
XM_017374663.1-protein
Sequence:
MDGMAFLEAPNTPSMVPEGVPYFIHINQNVSSGRKALKQNDDDIAICECK
YDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLF
RTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAY
IISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQD
IAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWED
GDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGF
AETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI
SQPRLSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQ
EEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEA
TCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDHLVKQLIM
Sequence Length:
494
Sequence Checksum:
c625f58c6372d7b8524528576a1a1719
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374663.1, derives from mRNA, XM_017374663.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YSA9 ((Putative histone-lysine N-methyltransferase ASHH1-like isoform X2 {ECO:0000313|EMBL:MPA34744.1}) (2.1.1.43 {ECO:0000313|EMBL:MPA34744.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 318/484 (65.70%), Postives = 376/484 (77.69%), Query Frame = 0
Match: A0A5B6YSA9 ((Putative histone-lysine N-methyltransferase ASHH1-like isoform X2 {ECO:0000313|EMBL:MPA34744.1}) (2.1.1.43 {ECO:0000313|EMBL:MPA34744.1}))
HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 318/484 (65.70%), Postives = 376/484 (77.69%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQ-----PRLSYNS-------GSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDH 487
+PEGVP FIHINQN SGRK KQ ++DI+ICECKYDA PD ACGERCLNVLTSTEC PGYCPC +YCKNQRFQKC+YA+TKLF+TEGRGWGLLA E IKAG F+IEYCGE+ISSEEA++RSQ YE QGL+DAYIISLNAN FIDATKKGS ARFINHSCQPNCETRKWTV GE RVGIFAKQDI+VGTELAYDYNFEWYGGAN+RCLCGA NCS FLGAKS GF EHNHVWEDGDDRYTV+ PLYDSAEDEP +K ++S + + GN D + +D ++ H +E + +I E S VEG + ++ VK+EV +E L+ + QQ R+ NS GSGS PK RSQH+P +SK RKQV+ K+VA+LFASK+A+EEVI+ EE++ EAT KL+ LY+EIRP+IEEH +DSQD+VPT+VAEKWIEA+C+KWKAE DL+FSI+KN +C P T GD+
Sbjct: 4 LPEGVPPFIHINQNEFSGRKHKKQKEEDISICECKYDANDPDCACGERCLNVLTSTECTPGYCPCSDYCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFIIEYCGEVISSEEAQRRSQTYEDQGLKDAYIISLNANNFIDATKKGSFARFINHSCQPNCETRKWTVLGEIRVGIFAKQDISVGTELAYDYNFEWYGGANIRCLCGADNCSKFLGAKSPGFLEHNHVWEDGDDRYTVEEIPLYDSAEDEPSSKLPKTSSSFRSEFITSGNSDYSVLLDASVQSVHQLESSGLIVETLYSVPVEG-VSMSTVKTEVSEEMKLYSQDAQQAFPHKNAMISRIQSNSACRNYHIGSGSVPKKRSQHIPNRKSKHLGRKQVDAKHVAQLFASKEAREEVIKYEEIKNEATSKLDSLYNEIRPAIEEHERDSQDSVPTSVAEKWIEASCSKWKAEFDLYFSIVKNALCT-PQRESGETKPSGDN 485
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BWW5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546590.1}))
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 315/484 (65.08%), Postives = 380/484 (78.51%), Query Frame = 0
Match: A0A5J5BWW5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546590.1}))
HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 315/484 (65.08%), Postives = 380/484 (78.51%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQ-----DISQPRLSYNS-------GSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDH 487
+PEGVP FIHINQN SGRK KQ ++DIA+CECKYDA PD ACG+RCLNVLTSTEC PGYCPC +YCKNQRFQKC+YA+T+LF+TEGRGWGLLA E IKAG F+IEYCGE+ISSEEA++RSQ YE+QGL+DAYIISLNANYFIDATKKGS ARFINHSCQPNCETRKWTV GE RVGIFAKQDI+VGTELAYDYNFEWYGGANVRCLCGA NCS FLGAKS GF EHNHVWEDGDDRYTV+ PLYDSAEDEP K S+S + + A GN D + +D ++ +E T ++ EP S VEG + + VK++ +ET+++ + QQ D R+ NS GSGS PK RSQH+P ++K RKQV+GK+VA+LFASK+AQEEV++ EE++ +AT KL+ +Y+EIRP+IEEH +DSQD+VPT+VAEKWIEA C+K KAE DL+FSI+KN +C + +T + GD+
Sbjct: 4 LPEGVPLFIHINQNEFSGRKHKKQKEEDIAVCECKYDANDPDCACGDRCLNVLTSTECTPGYCPCNDYCKNQRFQKCEYAKTQLFKTEGRGWGLLADENIKAGQFIIEYCGEVISSEEAQRRSQTYESQGLKDAYIISLNANYFIDATKKGSCARFINHSCQPNCETRKWTVLGEIRVGIFAKQDISVGTELAYDYNFEWYGGANVRCLCGADNCSKFLGAKSSGFLEHNHVWEDGDDRYTVEKIPLYDSAEDEPSLKLPKSSSSFKSEFIASGNGDYSVIMDASVQSEPQLESTALVIEPLYSVPVEG-VSTSTVKTDASEETNVYSQDAQQAFPHKDAMISRIQSNSACRNFHIGSGSVPKKRSQHIPNRKAKHPGRKQVDGKHVAQLFASKEAQEEVMKYEEIKNQATTKLDSIYNEIRPAIEEHERDSQDSVPTSVAEKWIEANCSKMKAEFDLYFSIVKNALCTPQRQSGETKPSGGDN 486
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7P0L5 (tRNA-uridine aminocarboxypropyltransferase {ECO:0000256|ARBA:ARBA00012386} (2.5.1.25 {ECO:0000256|ARBA:ARBA00012386}) (Fragment))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 300/490 (61.22%), Postives = 360/490 (73.47%), Query Frame = 0
Match: A0A5A7P0L5 (tRNA-uridine aminocarboxypropyltransferase {ECO:0000256|ARBA:ARBA00012386} (2.5.1.25 {ECO:0000256|ARBA:ARBA00012386}) (Fragment))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 300/490 (61.22%), Postives = 360/490 (73.47%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDL-------FPEKTQQDISQPR-----LSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDHLVKQLI 493
+ EGVP F+HI QN G K K D+DI +CECKYD P+SACGE CLNVLT+TEC PGYCPCGE+C NQ+FQKC+YA+TKLF+TEGRGWGL+A + IKAG F+IEYCGE+ISSEEAKQRSQ YEAQGL+DAYIISLNAN+FIDATKKGS+ARFINHSCQPNCETRKWTV GETRVGIFAK+DI GTELAYDYNFEWYGG VRCLCGA NCS+FLGAKSHGFQE+ HVWEDGDDRYTV+ PLYDSAEDEPF + ++ + + N + M+ G + E ++ + +V P+ + +E K TDL +T IS+ R +YN G ++ K RSQ K R+K RKQV+ K V +LFASK+A+EE+IR EEL+ EAT LN LYDEIRP+IEEH +DSQD+V T+VAEKWI+ATC+KWKAE D HFSI+KNV+CP + E S G+HLV+ I
Sbjct: 422 LAEGVPPFVHIRQNEFWGMKPKKLKDEDIVVCECKYDPFNPESACGESCLNVLTNTECTPGYCPCGEHCSNQKFQKCEYAETKLFKTEGRGWGLVANQKIKAGQFIIEYCGEVISSEEAKQRSQTYEAQGLKDAYIISLNANHFIDATKKGSLARFINHSCQPNCETRKWTVLGETRVGIFAKEDIVDGTELAYDYNFEWYGGLTVRCLCGAANCSLFLGAKSHGFQEYYHVWEDGDDRYTVENIPLYDSAEDEPFPR--PDFTMIAVKHESTVNDPSLMENGGGSIVK--FEAASVTQSNY---SVSPPMSAKPMAAERNKATDLSVGDKGQVFSQTNSMISRIRSNSACRNYNIGPNTSSKKRSQQKLKPRTKTFGRKQVSYKPVVELFASKKAREEIIRYEELKKEATSVLNSLYDEIRPAIEEHERDSQDSVSTSVAEKWIQATCSKWKAEFDFHFSIVKNVLCPP--SEEANPSGCGEHLVQNEI 902
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PUE3 ((AWS-like protein {ECO:0000313|EMBL:PWA89380.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 291/468 (62.18%), Postives = 349/468 (74.57%), Query Frame = 0
HSP 2 Score: 164.466 bits (415), Expect = 4.467e-41
Identity = 100/227 (44.05%), Postives = 136/227 (59.91%), Query Frame = 0
Match: A0A2U1PUE3 ((AWS-like protein {ECO:0000313|EMBL:PWA89380.1}))
HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 291/468 (62.18%), Postives = 349/468 (74.57%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKAL--KQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPRL--SYNSGSGSTPKSR-SQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANE 478
+PEGV F +I +N SGRK + KQ ++DIA+CECK+D +CGERCLNVLT+TEC PGYCPCG YCKNQRFQKC+YA+TKLF+TEGRGWGLLA E IKAG F+IEYCGE+ISS+EA+QRS+ YEAQGLRDAYIISLNAN+FIDATKKGS+ RFINHSCQPNCETRKWTV GETRVGIFA +DI VGTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K N + + + +A N+ IE + S F +A + + E KK + +S P +N+G+G R ++ P + K + RKQVNGK VA+LFASK+ Q+E+IRCEE R EAT KL+ +YDEIRP+IEE +DS D++PT VAEKWIEA+C+K+ A+ DL+F+++KNV+CP P ANE
Sbjct: 10 LPEGVAPFTYITRNERSGRKQIQIKQKEEDIAVCECKFDFGNTQLSCGERCLNVLTNTECTPGYCPCGSYCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGRFIIEYCGEVISSDEAEQRSRTYEAQGLRDAYIISLNANFFIDATKKGSLGRFINHSCQPNCETRKWTVLGETRVGIFATKDIPVGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDQFPLYDSAEDEPLDK-------VNKITDTTMQEASMTVKTEYAGVNNGIENNDKAS--FSESASGATVGNDKCVVEEKKNGG----QHAMVVSGPSAIGEFNNGTGKASAKRGAKRNPNRKQKLSGRKQVNGKRVAQLFASKKVQDELIRCEEERNEATMKLDSVYDEIRPAIEERERDSLDSLPTNVAEKWIEASCSKYNADFDLYFTVVKNVICPPPVANE 464
HSP 2 Score: 164.466 bits (415), Expect = 4.467e-41
Identity = 100/227 (44.05%), Postives = 136/227 (59.91%), Query Frame = 0
Query: 255 YTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPRL--SYNSGSGSTPKSR-SQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANE 478
YTVD FPLYDSAEDEP K N + + + +A N+ IE + S F +A + + E KK + +S P +N+G+G R ++ P + K + RKQVNGK VA+LFASK+ Q+E+IRCEE R EAT KL+ +YDEIRP+IEE +DS D++PT VAEKWIEA+C+K KA+ DL+F+++KNV+CP P ANE
Sbjct: 536 YTVDQFPLYDSAEDEPLDK-------VNKITDTTMQEASMTVKTEYAGVNNGIENNDKAS--FSESASGATVGNDKCVVEEKKNGG----QHAMVVSGPSAIGEFNNGTGKASAKRGAKRNPNRKQKLSGRKQVNGKRVAQLFASKKVQDELIRCEEERNEATMKLDSVYDEIRPAIEERERDSLDSLPTNVAEKWIEASCSKHKADFDLYFTVVKNVICP-PVANE 748
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251U5V6 ((Putative SET domain group 26 {ECO:0000313|EMBL:OTG18715.1}))
HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 296/468 (63.25%), Postives = 351/468 (75.00%), Query Frame = 0
Match: A0A251U5V6 ((Putative SET domain group 26 {ECO:0000313|EMBL:OTG18715.1}))
HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0
Identity = 296/468 (63.25%), Postives = 351/468 (75.00%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTK-HFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI----SQPRLSYNSGSGS-TPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHAN 477
+PEGV FIHI +N SGRK K+ ++DIA+CECK D + ACGERCLNVLT+TEC PGYCPCG YCKNQRFQK +YA+TKLF+TEGRGWGLLA E IKAG F+IEYCGE+ISS+EAK R+Q YE QGLRDAYIISLNANY+IDAT+KGS+ RFINHSCQPNCETRKWTV GETRVGIFA QDIAVGTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K ++L T+ T +K + F N N F S G + N +KSEVK E Q I ++ ++++G G+ + K ++ V + K + RKQVNGK VA+LFASK+ Q+E+I+CEE R AT KL+ +YDEIRP+IE+ +DS D++PT VAEKWIEA+C+K KA+ DL+FS++KNVVCP PH N
Sbjct: 12 LPEGVAPFIHITRNERSGRKQAKKKEEDIAVCECKLDPCKTELACGERCLNVLTNTECTPGYCPCGSYCKNQRFQKSEYAKTKLFKTEGRGWGLLADENIKAGMFIIEYCGEVISSDEAKLRAQTYETQGLRDAYIISLNANYYIDATRKGSLGRFINHSCQPNCETRKWTVLGETRVGIFATQDIAVGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDEFPLYDSAEDEPLDKVKVTDSTLPETLLT--------VKTESFGLNN------NGFGYKFKS--FSGSVSGN-IKSEVK-------ESGQNAIIVSGAKANDAFSNGLGTGSAKRAAKRVQNRKQKLSGRKQVNGKRVAQLFASKKVQDELIKCEEERNLATAKLDAVYDEIRPAIEQRERDSLDSLPTNVAEKWIEASCSKLKADFDLYFSVVKNVVCP-PHTN 454
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K2L2 ((AWS-like protein {ECO:0000313|EMBL:KVI04548.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 291/477 (61.01%), Postives = 346/477 (72.54%), Query Frame = 0
Match: A0A118K2L2 ((AWS-like protein {ECO:0000313|EMBL:KVI04548.1}))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 291/477 (61.01%), Postives = 346/477 (72.54%), Query Frame = 0
Query: 21 PYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEP---FTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPRL-------SYNSGSGSTPKSR-SQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGD 486
PYF + R+ +KQ ++DI +CECK+D D ACG+RCLNVLTSTEC PGYCPCG YCKNQRFQK +YA+TKLF+TEGRGWGLLA + IKAG F+IEYCGE+ISS+EAK+RSQ YEAQGLRDAYIISLNA+YFIDATKKGS+ARFINHSCQPNCETRKWTV GETRVGIFA QDI++GTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K DSA + T T + G + + S G AV K E D E Q + L +N+GSG+ R ++ P + K +SRKQ+NGK VA+LFASK+ Q+E+I+CEE+R+EAT KL+ +YDEIRP+IEE +DS D++PT+VAEKWIEA+C+K +A+LDL+F+++KNVVCP P E S GD
Sbjct: 98 PYFGKRADHNLVRRRKIKQKEEDIVVCECKFDFSKADLACGDRCLNVLTSTECTPGYCPCGSYCKNQRFQKSEYAKTKLFKTEGRGWGLLADQNIKAGQFIIEYCGEVISSDEAKERSQTYEAQGLRDAYIISLNASYFIDATKKGSLARFINHSCQPNCETRKWTVLGETRVGIFATQDISIGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDEFPLYDSAEDEPSDKLNKVTDSA-IQETSITV------KTEYAGLNNDSFGYKYKTCFSGMVGGGAV----------GNFKCEADGEKEGGQHPVVASGLRSNNAFGDFNNGSGTGSTKRPAKRSPNRKQKLSSRKQINGKRVAQLFASKKVQDELIKCEEVRSEATAKLDSVYDEIRPAIEERERDSLDSLPTSVAEKWIEASCSKLRADLDLYFTVVKNVVCPPPITTEPNPSGPGD 557
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q0W3 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS00044.1}) (Fragment))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 295/470 (62.77%), Postives = 341/470 (72.55%), Query Frame = 0
Match: A0A2R6Q0W3 ((Histone-lysine N-methyltransferase {ECO:0000313|EMBL:PSS00044.1}) (Fragment))
HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 295/470 (62.77%), Postives = 341/470 (72.55%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI------------SQPRLSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPR 473
+PEGVP FI +NQN SGRK K D+DIAICECKYDA PDSACGERCLNVLTSTEC GYCPC +YCKNQRFQK Y +TKLF+TEGRGWGLLA E IKAG F+IEYCGE+ISSEEAKQRS YEAQGL+DAYIISL ANYFIDATKKGS+ARFINHSCQPNCETRKWTV GE RVGIFAKQDI GTELAYDYNFEWYGGANVRCLCGAPNCS FLGAKS F EHNHVWE+GDDRYTV+ PLYDSAEDEP K + A N + + VD +E + + EP S E + IN VK+E +E ++ + Q S ++ GSGS PK +S + K +SK KQ++GK VA+LFASKQAQEE+++CEE+R +A KL YDEIRP+IEEH +DSQDNV + A WI A+C K KA+ + HF+I+KNVVCP+
Sbjct: 3 LPEGVPPFILVNQNDFSGRKHKKLKDEDIAICECKYDANDPDSACGERCLNVLTSTECTLGYCPCSDYCKNQRFQKSDYTKTKLFKTEGRGWGLLADENIKAGRFIIEYCGELISSEEAKQRSLVYEAQGLKDAYIISLYANYFIDATKKGSLARFINHSCQPNCETRKWTVLGEVRVGIFAKQDIYAGTELAYDYNFEWYGGANVRCLCGAPNCSKFLGAKSPAFLEHNHVWEEGDDRYTVEEIPLYDSAEDEPSLKLPKDKRSFGLDFLA-KNNISMVTVDTVGPERQ-LESSAAVVEPLHSVPTEH-VAINMVKAESSEEKKIYSQDNQNTFPPTNATTSQFQSSSAFRNFQIGSGSLPKKKSFSINK-KSKNNGGKQLDGKRVARLFASKQAQEEILKCEEIRNQAAAKLEASYDEIRPAIEEHERDSQDNVDISAAMTWIGASCAKMKADFNFHFAIVKNVVCPQ 468
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RAF5 ((Uncharacterized protein {ECO:0000313|EMBL:EYU36723.1}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 290/477 (60.80%), Postives = 350/477 (73.38%), Query Frame = 0
Match: A0A022RAF5 ((Uncharacterized protein {ECO:0000313|EMBL:EYU36723.1}))
HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 290/477 (60.80%), Postives = 350/477 (73.38%), Query Frame = 0
Query: 24 IHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQ-----PRLSYNS-----GSGSTP---KSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRP-HANEQTTSAEGD 486
+HI QN GRK +K ++DIA+CECKYDA P+SACGERCLNVLTSTEC PGYCPCGE+C NQ+FQKC+YA+T LF+T+GRGWGLLA + +KAG F+IEYCGE+ISSE+A+QRSQ YE QGL+DAYII L+ANYFIDATKKGSVARFINHSCQPNCETRKWTV GETRVGIFAK DIAVGTELAYDYNFEWYGGA VRCLCG+ NCS+FLGAKSHGFQE+NHVWEDGD RYTV+ PLYDSAED+ F + S + N M+ + +E +E +++ S L V +E KE + PE ++Q Q PR+ N+ G+G +P K R QH + K ++K V+ K VA+LFASK+ QEE+ + EE++ + T +LN LYDEIRP+IEEH +DSQDNV TAVAEKWIEATC+KWKAE D HFSIIKNV+CP P A ++ GD
Sbjct: 1 MHIRQNEFLGRKHIKLKEEDIAVCECKYDASNPESACGERCLNVLTSTECTPGYCPCGEHCMNQKFQKCEYAKTMLFQTQGRGWGLLADQNMKAGRFIIEYCGEVISSEKARQRSQTYETQGLKDAYIICLDANYFIDATKKGSVARFINHSCQPNCETRKWTVLGETRVGIFAKNDIAVGTELAYDYNFEWYGGATVRCLCGSTNCSLFLGAKSHGFQEYNHVWEDGDARYTVENVPLYDSAEDDSFPA--PACSTIPVKHEPVSNYSALMENNSGSEIK--LETASVMESSNYSVVSLQDLAGKPVATERNKEAEHGPENSRQVFPQTNPMIPRIRSNTACRNYGTGPSPSSSKKRPQHTTNQKKKPPAKKYVSSKPVAELFASKRVQEEIKKYEEVKNQVTSELNSLYDEIRPAIEEHERDSQDNVSTAVAEKWIEATCSKWKAEFDFHFSIIKNVMCPTPGTAGDEAKPPSGD 473
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6B8A6 ((histone-lysine N-methyltransferase ASHH1 {ECO:0000313|RefSeq:XP_022773422.1, ECO:0000313|RefSeq:XP_022773423.1}))
HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 290/481 (60.29%), Postives = 348/481 (72.35%), Query Frame = 0
Match: A0A6P6B8A6 ((histone-lysine N-methyltransferase ASHH1 {ECO:0000313|RefSeq:XP_022773422.1, ECO:0000313|RefSeq:XP_022773423.1}))
HSP 1 Score: 574.704 bits (1480), Expect = 0.000e+0
Identity = 290/481 (60.29%), Postives = 348/481 (72.35%), Query Frame = 0
Query: 18 EGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQ-----PRLSYNSGS-------GSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGD 486
E +P + HI QN S RK KQ ++DIAICECK+D PDSACGERCLNVLTSTEC PGYCPCG YCKNQ+FQKCQYA+T LF+TEGRGWGLLA E IK G F+IEYCGE+ISS+EAK+RSQAYE QGL+DA+IISLN + IDATKKGS+ARFINHSCQPNCETRKWTV GE RVGIFAKQDI +G ELAYDYNFEWYGGA VRCLCGAPNCS FLGAKS GFQE ++WED DDRY+V+ PLYDSAEDEP K S +L N+ + P+ VD ++ +E T +A +EG + +N VK+E ++ + + QQ SQ R+ NS G PK +SQH +SK S+KQ++ K++A+L ASK+AQEEV R EEL+ EAT +L LYDEIRP+IEEH +D+QD+V T+VAEKWIEA+C+K K E D H SI+KN+VC A EQ E D
Sbjct: 6 EDLPQYEHIFQNEFSYRKHKKQKEEDIAICECKFDFSDPDSACGERCLNVLTSTECTPGYCPCGVYCKNQKFQKCQYARTTLFKTEGRGWGLLAAENIKVGQFIIEYCGEVISSKEAKRRSQAYENQGLKDAFIISLNGSESIDATKKGSLARFINHSCQPNCETRKWTVLGEIRVGIFAKQDITIGAELAYDYNFEWYGGAKVRCLCGAPNCSGFLGAKSRGFQEDTYLWEDNDDRYSVEKIPLYDSAEDEPAAKLLKSVNL-NSENDVDIKSEQPLTVDVSVKSELQLEST------VDTAPMEG-IVVNTVKTESTEDMSSYSQDAQQAFSQKNAMISRIRSNSACRNYHIRLGPMPKKKSQHYSNGKSKHLSKKQIDLKHLAQLLASKEAQEEVFRYEELKNEATCQLASLYDEIRPAIEEHERDNQDSVSTSVAEKWIEASCSKLKIEFDFHSSILKNIVCTSRKACEQGKPCELD 478
BLAST of XM_017374663.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7H803 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g008460.3.1}))
HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 288/459 (62.75%), Postives = 337/459 (73.42%), Query Frame = 0
Match: A0A3Q7H803 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g008460.3.1}))
HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 288/459 (62.75%), Postives = 337/459 (73.42%), Query Frame = 0
Query: 16 VPEGVPYFIHINQNVSSGRKALKQNDDDIAICECKYDARYPDSACGERCLNVLTSTECVPGYCPCGEYCKNQRFQKCQYAQTKLFRTEGRGWGLLAGECIKAGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVARFINHSCQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPRLSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRP 474
+PEGV FI+I QN GRK K +DDIAICECKYDA P+SAC ERCLNV+T+TEC PGYC CG C+NQRFQKC+YA+TKLFRTEGRGWGLLA E IKAG F+IEYCGE+ISSEEAK+RSQAYEA GL+DAYIISL+AN+FIDAT+KGS ARFINHSC PNCETRKWTV GETRVGIFAKQDI++G ELAYDYNFEWYGGA V+CLCGA NCSIFLGAKS GFQE+NHVWEDGD RYTV+ PLYDSAED+ SL T GN E T I+++ GS L + + K S+N GSGSTPK +Q +PK + K +SRKQVN + AKLFASK+A+EEV E L+ EAT KLN +Y+EIRP+IEEH +D+QD+VPT+VAE WIEA C+K+KA+ DL+FS+IKNV+ PRP
Sbjct: 14 LPEGVTPFIYITQNEFLGRKHKKLKEDDIAICECKYDASVPESACVERCLNVITNTECTPGYCQCGATCRNQRFQKCEYAKTKLFRTEGRGWGLLADENIKAGQFIIEYCGEVISSEEAKKRSQAYEAHGLKDAYIISLDANHFIDATRKGSFARFINHSCWPNCETRKWTVLGETRVGIFAKQDISIGMELAYDYNFEWYGGATVQCLCGAANCSIFLGAKSQGFQEYNHVWEDGDVRYTVEEVPLYDSAEDD---------SLPVIAGTGGGN-----------------EQTKILNDSEGST-----LKLEPSNTTCK-------------------SFNIGSGSTPKKTAQRLPKRKVKSSSRKQVNDGDFAKLFASKEAREEVTMYEGLKNEATSKLNSVYEEIRPTIEEHGRDNQDSVPTSVAETWIEAHCSKYKADFDLYFSVIKNVMHPRP 422
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YSA9 | E-Value: 0.000e+0, PID: 65.70 | (Putative histone-lysine N-methyltransferase ASHH1... [more] |
| A0A5J5BWW5 | E-Value: 0.000e+0, PID: 65.08 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A5A7P0L5 | E-Value: 0.000e+0, PID: 61.22 | tRNA-uridine aminocarboxypropyltransferase {ECO:00... [more] |
| A0A2U1PUE3 | E-Value: 4.467e-41, PID: 62.18 | (AWS-like protein {ECO:0000313|EMBL:PWA89380.1})[more] |
| A0A251U5V6 | E-Value: 0.000e+0, PID: 63.25 | (Putative SET domain group 26 {ECO:0000313|EMBL:OT... [more] |
| A0A118K2L2 | E-Value: 0.000e+0, PID: 61.01 | (AWS-like protein {ECO:0000313|EMBL:KVI04548.1})[more] |
| A0A2R6Q0W3 | E-Value: 0.000e+0, PID: 62.77 | (Histone-lysine N-methyltransferase {ECO:0000313|E... [more] |
| A0A022RAF5 | E-Value: 0.000e+0, PID: 60.80 | (Uncharacterized protein {ECO:0000313|EMBL:EYU3672... [more] |
| A0A6P6B8A6 | E-Value: 0.000e+0, PID: 60.29 | (histone-lysine N-methyltransferase ASHH1 {ECO:000... [more] |
| A0A3Q7H803 | E-Value: 0.000e+0, PID: 62.75 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |