Resource Type:
Polypeptide
Name:
XM_017375259.1
Identifier:
XM_017375259.1-protein
Sequence:
MGPLTLSVDMKSSSSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTL
FEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNL
AGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRV
PTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAM
QFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRL
MIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVL
ESTKRLLAERHSTHQNLDSKKD
Sequence Length:
322
Sequence Checksum:
89bb5284faf2c3532c670fbafd2f5add
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375259.1, derives from mRNA, XM_017375259.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6RRI2 ((Putative mitochondrial carrier protein {ECO:0000313|EMBL:PRQ49046.1}))
HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 264/326 (80.98%), Postives = 296/326 (90.80%), Query Frame = 0
Match: A0A2P6RRI2 ((Putative mitochondrial carrier protein {ECO:0000313|EMBL:PRQ49046.1}))
HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 264/326 (80.98%), Postives = 296/326 (90.80%), Query Frame = 0
Query: 1 MGPLTLSVDMKS----SSSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
MGPLTL+V+ +S SSSDA S+K Q++ + K+ FASVS ++KPFDFLRTLFEG IAGGTAGVVVETALYPIDTIKTRLQA RGGG+I+LKGLYSGLAGNLAGVLPASA+F+GVYEP K+KLL+MFPE+LSALAH +AGACGG+AASLIRVPTEVVKQRMQTGQF SA AVR+I + EGFKGLYAGYGSFLLRDLPFDA+QFC+YEQLR+GYK+AAKRELNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGIVDCVQTI+REEGPPAL+KGIGPRVLWIGIGGSIFFGVLE TKRLLA+R T D+K+D
Sbjct: 1 MGPLTLAVNSESFAGASSSDACSKKFQNVPMAKRKPFASVSMQDDKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGGKIVLKGLYSGLAGNLAGVLPASAIFVGVYEPTKQKLLKMFPENLSALAHFTAGACGGIAASLIRVPTEVVKQRMQTGQFTSASAAVRLIAAKEGFKGLYAGYGSFLLRDLPFDAIQFCLYEQLRIGYKVAAKRELNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIVREEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRLLAQRRPTVGE-DTKQD 325
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BW89 ((Uncharacterized protein {ECO:0000313|EMBL:MPA73120.1}))
HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 273/327 (83.49%), Postives = 303/327 (92.66%), Query Frame = 0
Match: A0A5B7BW89 ((Uncharacterized protein {ECO:0000313|EMBL:MPA73120.1}))
HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 273/327 (83.49%), Postives = 303/327 (92.66%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSSSDAS---SRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERH-STHQNLD-SKKD 322
MGP TL+VD KSSS +S +R+++SLQL+ K FFASV+TGEE PFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQA GGG+I+LKGLYSGLAGNL GVLPASA+F+GVYEP KKKLL++FPE+LSA+AHL+AGA GGLAASLIRVPTEVVKQRMQTGQFASAP+AVR+I+S EGFKGLYAGYGSFLLRDLPFDA+QFC+YEQLR+GYKLAAKR+LNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGI DCVQTI+REEGPPAL+KGIGPRVLWIGIGGSIFFGVLE TKRLLA+R S HQ+ D SKKD
Sbjct: 1 MGPFTLAVDSKSSSIVSSDASNRRMRSLQLEPKKFFASVNTGEENPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAAHGGGKIVLKGLYSGLAGNLVGVLPASAMFVGVYEPTKKKLLKVFPENLSAVAHLTAGAIGGLAASLIRVPTEVVKQRMQTGQFASAPDAVRLIVSREGFKGLYAGYGSFLLRDLPFDAIQFCLYEQLRIGYKLAAKRDLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIFDCVQTIVREEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRLLAQRRPSHHQHSDSSKKD 327
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5MVP5 ((Uncharacterized protein {ECO:0000313|EMBL:GAY32036.1}))
HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 260/322 (80.75%), Postives = 291/322 (90.37%), Query Frame = 0
Match: A0A2H5MVP5 ((Uncharacterized protein {ECO:0000313|EMBL:GAY32036.1}))
HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 260/322 (80.75%), Postives = 291/322 (90.37%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSSSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
M PLTL VD K+SS D S+ K+Q+LQL+ K FASVS GEEKPFDF R LFEG IAGGTAGVVVETALYPIDTIKTRLQAVRGGG+I KGLYSGLAGNLAGVLPASALF+GVYEP K+KLL++FPE+LSA AHL+AGA GG AASL+RVPTEVVKQR+QTGQ+ASAP+AVR+I S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+ YK AA+R+LNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGI DCVQTI+REEGPPAL+KGIGPRV+WIGIGGSIFFGVLESTKR+L++R H +SK+D
Sbjct: 1 MAPLTLGVDAKTSS-DVSNWKMQNLQLETKKLFASVSMGEEKPFDFFRILFEGVIAGGTAGVVVETALYPIDTIKTRLQAVRGGGKINFKGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVRVPTEVVKQRLQTGQYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKAAARRDLNDPENAIIGAFAGAITGAITTPLDVIKTRLMVQGSANQYKGIFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLESTKRMLSQRRPVHDQ-NSKED 320
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4G7E1 ((S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X2 {ECO:0000313|RefSeq:XP_018839810.2}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 260/326 (79.75%), Postives = 293/326 (89.88%), Query Frame = 0
Match: A0A2I4G7E1 ((S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X2 {ECO:0000313|RefSeq:XP_018839810.2}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 260/326 (79.75%), Postives = 293/326 (89.88%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSSS---DASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHST-HQNLDSKKD 322
MGP+TL+ D KSSS DA R +++ QL+++ FASV+ GEEKPFDF+RT FEG IAGGTAGVVVETALYPIDTIKTRLQA GG +I LKGLYSGLAGNLAGVLPASA+F+GVYEPAK+KLL+MFPE+LSA AH +AGA GG+AASLIRVPTEVVKQRMQTGQF SAP+AVR+I+S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+GYK AAKR+LNDPENA+IGAFAG +TGAITTPLDVIKTRLMIQGS NQYKG+ DCVQTI+REEGPPAL+KGIGPRVLWIGIGGSIFFGVLESTKR LA+R T HQN ++K+D
Sbjct: 1 MGPITLAADAKSSSVASLDARERTMRNSQLERRQSFASVNMGEEKPFDFIRTFFEGVIAGGTAGVVVETALYPIDTIKTRLQAAHGGAKINLKGLYSGLAGNLAGVLPASAVFVGVYEPAKQKLLKMFPENLSAAAHFTAGAIGGIAASLIRVPTEVVKQRMQTGQFTSAPDAVRLIVSKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKAAAKRDLNDPENALIGAFAGVLTGAITTPLDVIKTRLMIQGSANQYKGVFDCVQTIVREEGPPALLKGIGPRVLWIGIGGSIFFGVLESTKRSLAQRRPTPHQNSNTKQD 326
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4T371 ((Uncharacterized protein {ECO:0000313|EMBL:ESR54623.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 260/322 (80.75%), Postives = 290/322 (90.06%), Query Frame = 0
Match: V4T371 ((Uncharacterized protein {ECO:0000313|EMBL:ESR54623.1}))
HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 260/322 (80.75%), Postives = 290/322 (90.06%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSSSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
M PLTL VD K+SS D S+ K+Q+LQL+ K FASVS GEEKPFDF R LFEG IAGGTAGVVVETALYPIDTIKTRLQAVRGGG+I KGLYSGLAGNLAGVLPASALF+GVYEP K+KLL++FPE+LSA AHL+AGA GG AASL+RVPTEVVKQR+QTGQ+ASAP+AVR+I S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+ YK AA+R+LNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGI DCVQTI+REEGPPAL+KGIGPRV+WIGIGGSIFFGVLE TKR+LA+R H +SK+D
Sbjct: 1 MAPLTLGVDAKTSS-DVSNWKMQNLQLETKKLFASVSMGEEKPFDFFRILFEGVIAGGTAGVVVETALYPIDTIKTRLQAVRGGGKINFKGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVRVPTEVVKQRLQTGQYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKAAARRDLNDPENAIIGAFAGAITGAITTPLDVIKTRLMVQGSANQYKGIFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQRRPVHDQ-NSKED 320
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7HWQ3 ((Uncharacterized protein {ECO:0000313|EMBL:TXG60582.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 259/317 (81.70%), Postives = 290/317 (91.48%), Query Frame = 0
Match: A0A5C7HWQ3 ((Uncharacterized protein {ECO:0000313|EMBL:TXG60582.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 259/317 (81.70%), Postives = 290/317 (91.48%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSS---SDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTH 314
MGPLTLS D K+SS SD +R++Q+L L+ + FASVS GEEKPFDF R LFEG IAGGTAGVVVETALYPIDTIKTRLQAVRGGG+I LKGLYSGLAGN+AGVLPASALF+GVYEP K+KLL+MFPE+LSA+AHL+AGA GGLAASLIRVPTEVVKQRMQTGQFASAP+AVR+I++ EG KGLYAGYGSFLLRDLPFDA+QFCIYEQLR+ YK AA R+LNDPENA+IGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGI+DCVQTI+REEGPPAL+KGIGPRVLWIGIGGSIFFGVLE TKR+LA+R +H
Sbjct: 1 MGPLTLSDDAKTSSAARSDLPNRRMQNLHLETRKAFASVSMGEEKPFDFFRILFEGVIAGGTAGVVVETALYPIDTIKTRLQAVRGGGKIDLKGLYSGLAGNIAGVLPASALFVGVYEPTKQKLLKMFPENLSAVAHLTAGAIGGLAASLIRVPTEVVKQRMQTGQFASAPDAVRLIVAKEGLKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIDYKAAACRDLNDPENAVIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIMDCVQTIVREEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRMLAQRRPSH 317
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XMC8 ((S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1 {ECO:0000313|RefSeq:XP_009792043.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 259/324 (79.94%), Postives = 292/324 (90.12%), Query Frame = 0
Match: A0A1U7XMC8 ((S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1 {ECO:0000313|RefSeq:XP_009792043.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 259/324 (79.94%), Postives = 292/324 (90.12%), Query Frame = 0
Query: 1 MGPLTLSVDMKSS--SSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
MGP L++D K+S +SDAS RK+ +LQ+ KNFFASV++GEEKPFDFLR LFEG IAGGTAGVVVET LYPIDTIKTRLQA RGGGQI LKGLYSGLAGNLAGVLPASA+F+GVYEPAK+KLL+M PE+LSA+AHL+AGA GG+AAS +RVPTEV+KQRMQT QFASAP+AVR+I+S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+GYKLAAKR+LNDPENA+IGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGIVDCV+TI+ EEG PAL+KGIGPRVLWIGIGGSIFFGVLE TKR LA+ N SK+D
Sbjct: 1 MGPFALALDTKNSFAASDASGRKMDNLQMVPKNFFASVNSGEEKPFDFLRILFEGVIAGGTAGVVVETVLYPIDTIKTRLQAARGGGQIALKGLYSGLAGNLAGVLPASAIFVGVYEPAKQKLLKMLPENLSAVAHLTAGALGGIAASFVRVPTEVIKQRMQTRQFASAPDAVRLIVSKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAKRDLNDPENAVIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVRTIVAEEGAPALLKGIGPRVLWIGIGGSIFFGVLERTKRYLAQNRP--DNAASKQD 322
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A803QZH4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:cds.novel_model_3264_5bd9a17a}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 261/324 (80.56%), Postives = 290/324 (89.51%), Query Frame = 0
Match: A0A803QZH4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:cds.novel_model_3264_5bd9a17a}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 261/324 (80.56%), Postives = 290/324 (89.51%), Query Frame = 0
Query: 1 MGPLTLSVDMKSS---SSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKK 321
MGPL L+++ KSS S+D + Q+L L++K FA+ S +KPFDF RTLFEG IAGGTAGVVVETALYPIDTIKTRLQAVRGGG+I+ KGLYSGLAGNLAGVLPASA+F+GVYEP K+KLL M PE+LSA+AHL+AGA GGLAASLIRVPTEVVKQRMQTGQFASAPNAVR+I+S EGFKGLYAGYGSFLLRDLPFDA+QFC+YEQLR+GYKLA KRELNDPENA+IGAFAGA+TGA TTPLDVIKTRLM+QGSGNQYKGI+DCVQTI+REEGPPAL+KGIGPRVLWIGIGGSIFFGVLE TKRLLAER Q DSKK
Sbjct: 1 MGPLPLTIEAKSSTLVSADPCHKSGQNLSLKRKKIFAAASMEAQKPFDFFRTLFEGTIAGGTAGVVVETALYPIDTIKTRLQAVRGGGKIVWKGLYSGLAGNLAGVLPASAIFVGVYEPTKQKLLRMVPENLSAVAHLTAGAIGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRLIVSKEGFKGLYAGYGSFLLRDLPFDAIQFCMYEQLRIGYKLAVKRELNDPENALIGAFAGALTGAATTPLDVIKTRLMVQGSGNQYKGILDCVQTIVREEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRLLAERQPVVQQ-DSKK 323
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KGQ5 ((Uncharacterized protein {ECO:0000313|EMBL:KDP35277.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 263/326 (80.67%), Postives = 291/326 (89.26%), Query Frame = 0
Match: A0A067KGQ5 ((Uncharacterized protein {ECO:0000313|EMBL:KDP35277.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 263/326 (80.67%), Postives = 291/326 (89.26%), Query Frame = 0
Query: 1 MGPLTLSVDMKSSS---SDASSRKLQSL-QLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
MGPLTL++D KSSS SDA K+QS QL+ + FAS+ST EEKPFDFLRTLFEG IAGG AGVVVETALYPIDTIKTRLQA GGG+IILKGLYSGLAGN+AGVLPASALF+GVYEP K+KLL M PE+LSA+AHL+AGA GG+AASLIRVPTEVVKQRMQTGQF SAPNAVR+I+S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+GYK+AA+RELNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQYKGI DCVQT++REEGP AL+KG+GPRVLWIGIGGSIFFGVLESTKR L++R T SK D
Sbjct: 1 MGPLTLAIDAKSSSNVSSDAPFNKIQSSSQLEARKAFASISTQEEKPFDFLRTLFEGVIAGGAAGVVVETALYPIDTIKTRLQAAHGGGKIILKGLYSGLAGNIAGVLPASALFVGVYEPTKQKLLRMLPENLSAVAHLTAGAVGGVAASLIRVPTEVVKQRMQTGQFTSAPNAVRLIISREGFKGLYAGYGSFLLRDLPFDAVQFCIYEQLRIGYKVAAQRELNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIFDCVQTVVREEGPNALLKGLGPRVLWIGIGGSIFFGVLESTKRFLSQRRLTPSQ-QSKSD 325
BLAST of XM_017375259.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A3ASE1 ((S-adenosylmethionine carrier 1 {ECO:0000313|EMBL:KAE8706828.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 263/325 (80.92%), Postives = 290/325 (89.23%), Query Frame = 0
Match: A0A6A3ASE1 ((S-adenosylmethionine carrier 1 {ECO:0000313|EMBL:KAE8706828.1}))
HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 263/325 (80.92%), Postives = 290/325 (89.23%), Query Frame = 0
Query: 1 MGPLTLSVDMKSS---SSDASSRKLQSLQLQKKNFFASVSTGEEKPFDFLRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAVRGGGQIILKGLYSGLAGNLAGVLPASALFIGVYEPAKKKLLEMFPEDLSALAHLSAGACGGLAASLIRVPTEVVKQRMQTGQFASAPNAVRIILSSEGFKGLYAGYGSFLLRDLPFDAMQFCIYEQLRMGYKLAAKRELNDPENAIIGAFAGAVTGAITTPLDVIKTRLMIQGSGNQYKGIVDCVQTIIREEGPPALIKGIGPRVLWIGIGGSIFFGVLESTKRLLAERHSTHQNLDSKKD 322
MGP TL+VD KSS SD S+RK+Q+LQLQ K FASVS +EKPFDFLR LFEG IAGGTAGVVVETALYPIDTIKTRLQA RGGG+I+LKGLYSGLAGNLAGVLPASALF+GVYEP K+KLL++ PE+LSA+AHL+AGA GG+AASLIRVPTEVVKQRMQTGQF SA NAVR+I S EGFKGLYAGYGSFLLRDLPFDA+QFCIYEQLR+GYK AA+R+LNDPENAIIGAFAGA+TGAITTPLDVIKTRLM+QGS NQY+G+ DCVQTIIREEG AL+KGI PRVLWIGIGGSIFFGVLESTKRLLAER + +SK D
Sbjct: 1 MGPFTLAVDSKSSHVVCSDVSNRKIQNLQLQTKKCFASVSLEDEKPFDFLRILFEGIIAGGTAGVVVETALYPIDTIKTRLQAARGGGKIVLKGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLKLLPENLSAVAHLTAGAIGGIAASLIRVPTEVVKQRMQTGQFTSASNAVRVIASKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKAAARRDLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYRGVFDCVQTIIREEGSSALLKGIQPRVLWIGIGGSIFFGVLESTKRLLAERRPKPRQ-ESKHD 324
| Match Name | Stats | Description |
|---|---|---|
| A0A2P6RRI2 | E-Value: 0.000e+0, PID: 80.98 | (Putative mitochondrial carrier protein {ECO:00003... [more] |
| A0A5B7BW89 | E-Value: 0.000e+0, PID: 83.49 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7312... [more] |
| A0A2H5MVP5 | E-Value: 0.000e+0, PID: 80.75 | (Uncharacterized protein {ECO:0000313|EMBL:GAY3203... [more] |
| A0A2I4G7E1 | E-Value: 0.000e+0, PID: 79.75 | (S-adenosylmethionine carrier 1, chloroplastic/mit... [more] |
| V4T371 | E-Value: 0.000e+0, PID: 80.75 | (Uncharacterized protein {ECO:0000313|EMBL:ESR5462... [more] |
| A0A5C7HWQ3 | E-Value: 0.000e+0, PID: 81.70 | (Uncharacterized protein {ECO:0000313|EMBL:TXG6058... [more] |
| A0A1U7XMC8 | E-Value: 0.000e+0, PID: 79.94 | (S-adenosylmethionine carrier 1, chloroplastic/mit... [more] |
| A0A803QZH4 | E-Value: 0.000e+0, PID: 80.56 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A067KGQ5 | E-Value: 0.000e+0, PID: 80.67 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3527... [more] |
| A0A6A3ASE1 | E-Value: 0.000e+0, PID: 80.92 | (S-adenosylmethionine carrier 1 {ECO:0000313|EMBL:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |