Resource Type:
Polypeptide
Name:
XM_017374552.1
Identifier:
XM_017374552.1-protein
Sequence:
MMSSNPAAGELTPQQQQQQQQWLAMQQQYHQQWLAMQQHQQLMYQQQAPQ
FMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSV
KLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWAT
FSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDT
NTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQ
QQYSSQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPI
GKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESG
NQWNGNSYGKQGYNGYQDPNMYGGAATAYGASTNGYGNQ
Sequence Length:
389
Sequence Checksum:
4e3a6e0ee3cc0e3c22b853f762dc49cf
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374552.1, derives from mRNA, XM_017374552.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TRE9 ((polyadenylate-binding protein RBP47 {ECO:0000313|RefSeq:XP_011088289.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 266/405 (65.68%), Postives = 308/405 (76.05%), Query Frame = 0
Match: A0A6I9TRE9 ((polyadenylate-binding protein RBP47 {ECO:0000313|RefSeq:XP_011088289.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0
Identity = 266/405 (65.68%), Postives = 308/405 (76.05%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQ-----QHQQLMYQQQAPQFMPYYQQQQ------------------AAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQG--------------SQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGYQDPNMYGGAATAYGASTNGYGNQ 389
W+AMQQ Y QQW+AMQ Q +MY Q ++PYY QIQSS E+NKT+WIGDLQ WMDE YL SCF+ +GE VSVK+IRNKQTGQSER+GFIEF SH AAEK+LQSYNGTVMPNT+Q FRLNWA FS+G+RR +AGSD SIFVGDLA+DVTD++L +TF+SR+ +V+GAKVVVD N+GRSKGYGFVRFGDENER RAMTEMNG YCSSRPMRIGVATPKKPS QQQYSSQ QS+ D+SNTT+FVGGLDSDV DEELR +FS FG+V+SVKIP GKGCGFVQFA+RS+AE +I+++NGTVIGKQTVRLSWGRN GNKQ R + +QWNG YG+QGYNGY GA AYGAS+NG+GN
Sbjct: 24 WVAMQQ-YQQQWMAMQYPAMAMQQHMMYNQH---YVPYYHPHHLPQQQQYQQQPPPQPPKQNNQIQSSGEDNKTIWIGDLQQWMDEGYLQSCFSQTGEVVSVKIIRNKQTGQSERYGFIEFNSHLAAEKVLQSYNGTVMPNTEQPFRLNWAAFSSGDRRPEAGSDLSIFVGDLATDVTDTLLHDTFASRFPSVKGAKVVVDANSGRSKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIGVATPKKPS-PQQQYSSQAVVLAGGYPNGIVPQGQSENDSSNTTIFVGGLDSDVTDEELRQSFSPFGDVVSVKIPAGKGCGFVQFANRSNAEDAIQRLNGTVIGKQTVRLSWGRNMGNKQSRVDPNSQWNGAYYGRQGYNGYGY-----GAVAAYGASSNGHGNH 418
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H477 ((Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) {ECO:0000313|EMBL:PIN12328.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 6.105e-179
Identity = 256/392 (65.31%), Postives = 303/392 (77.30%), Query Frame = 0
Match: A0A2G9H477 ((Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) {ECO:0000313|EMBL:PIN12328.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 6.105e-179
Identity = 256/392 (65.31%), Postives = 303/392 (77.30%), Query Frame = 0
Query: 14 QQQQQQQQWLAMQQQYHQQWLAMQ-----QHQQLMYQQQAPQFMPYYQ-------------QQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGYQDPNMYGGAATAYGASTNGYG 387
QQ+ Q QQW+AMQQ Y QQW+AMQ QQ+MY P ++PYY QQQ QIQSS E+N+T+WIGDLQ WMDE Y+ SCF+ +GE VSVK+IRNKQTGQSER+GF+EF SH AAE +LQSYNGT+MP+ +Q FRLNWATFST +RR +AGSD SIFVGDLA+DVTD++L +TF+SRY +V+ AKVVVD NTGRSKGYGFVRFGDENE+ AM EMNG YCSSRPMRIGVATPKKPS QQY+SQG QS+ D+S TTVFVGGLDS V DEELR +F +GE++SVKIP GKGCGFVQF +RS+AE +I+ +NG +IGKQ VRLSWGRNPGNK R + +QWNG YG+QGYNG YG + AYGA +NG G
Sbjct: 8 QQRMQHQQWVAMQQ-YQQQWMAMQYPAMAMQQQMMYN---PHYVPYYHHQQEYQHQTQPLLQQQGNQIQSSGEDNRTIWIGDLQQWMDESYVQSCFSQTGEVVSVKIIRNKQTGQSERYGFVEFNSHLAAENVLQSYNGTMMPSAEQPFRLNWATFSTADRRPEAGSDPSIFVGDLATDVTDALLHDTFASRYPSVKSAKVVVDPNTGRSKGYGFVRFGDENEKSNAMNEMNGVYCSSRPMRIGVATPKKPSPL-QQYNSQG-QSENDSSTTTVFVGGLDSAVTDEELRDSFIPYGEIVSVKIPAGKGCGFVQFVNRSNAEDAIQGLNGAIIGKQKVRLSWGRNPGNKHSRMDHSSQWNGAYYGRQGYNG------YGYSGVAYGAPSNGNG 387
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7ESU4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108500.3.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 2.616e-178
Identity = 254/375 (67.73%), Postives = 297/375 (79.20%), Query Frame = 0
Match: A0A3Q7ESU4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108500.3.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 2.616e-178
Identity = 254/375 (67.73%), Postives = 297/375 (79.20%), Query Frame = 0
Query: 42 LMYQQQAPQFMPYYQQQQ----AAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
+MY QQ +MPYY QQ+ QIQ+SSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF SHAAAEK+LQSYNGT+MPN +Q FRLNWA FS GE+R + GSD SIFVGDLASDVTD++L +TF+SRY +V+GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSRPMR+GVATPKKPS QQQ+SSQ GSQSDGD+SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G VIGKQ VRLSWGR+P NKQ R +SGN G YG+Q Y GY QD MY A GA++NGYGNQ
Sbjct: 1 MMYGQQ---YMPYYHQQKMQQPPTQIQNSSEDNKTIWIGDLQQWMDESYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNSHAAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVATPKKPS-AQQQFSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAVIGKQAVRLSWGRSPSNKQMRSDSGN--GGGYYGRQNYGGYGYGASQNQDSGMY-----AAGAASNGYGNQ 364
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2V9C2 ((DNA-binding protein-like {ECO:0000313|EMBL:ABB86246.1}))
HSP 1 Score: 508.834 bits (1309), Expect = 3.113e-178
Identity = 268/401 (66.83%), Postives = 311/401 (77.56%), Query Frame = 0
Match: Q2V9C2 ((DNA-binding protein-like {ECO:0000313|EMBL:ABB86246.1}))
HSP 1 Score: 508.834 bits (1309), Expect = 3.113e-178
Identity = 268/401 (66.83%), Postives = 311/401 (77.56%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQQH------QQLMYQQQAPQFMPYYQQQQAAQIQ---SSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQD------AGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQG-----------SQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
W+AMQ Y QQW+AMQQ+ Q+MPYY QQQ IQ + SE+N+T+WIGDLQ WMDE YLH+CFA +GE +SVK+IRNKQTGQSER+GFIEF +H AAEK+LQSYNGT+MPN +Q FRLNW+ FSTGE+R D +GSD SIFVGDLASDVTD++L +TFSSRY +V+GAKVV+D+NTGRSKGYGFVRF DE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQYSSQG SQ+D D SNTTVFVGGLDSDV DEELR +FSQFG V+SVKIP GKGCGFVQF++RS+AE +IE++NGTVIG QTVRLSWGRNP NKQFR +SG+QWNG YG+Q Y GY QD +MY GA A+GAS+NGYGN
Sbjct: 22 WMAMQH-YQQQWMAMQQYPPAAAMVMQQQMMYGQQYMPYYHQQQQHMIQIQQNGSEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEKVLQSYNGTMMPNAEQPFRLNWSAFSTGEKRADVGAAAGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYCSSRAMRIGVATPKKPSA-MQQYSSQGGHASNGAATQTSQTDSDLSNTTVFVGGLDSDVTDEELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIGTQTVRLSWGRNPANKQFRTDSGSQWNGGYYGRQNYGGYGYGASQSQD-SMY-GAGAAHGASSNGYGNH 418
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47))
HSP 1 Score: 506.138 bits (1302), Expect = 5.230e-177
Identity = 260/403 (64.52%), Postives = 304/403 (75.43%), Query Frame = 0
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47))
HSP 1 Score: 506.138 bits (1302), Expect = 5.230e-177
Identity = 260/403 (64.52%), Postives = 304/403 (75.43%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQ------------QHQQLMYQQQAPQFMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
WLAMQQ Y QQW+AMQ + Q QQ QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPNT+Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS +QYSSQ GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+N YGN
Sbjct: 24 WLAMQQ-YQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYQQHQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNRYGNH 423
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3ZHE5 ((polyadenylate-binding protein RBP47-like {ECO:0000313|RefSeq:XP_016463741.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.375e-176
Identity = 247/351 (70.37%), Postives = 286/351 (81.48%), Query Frame = 0
Match: A0A1S3ZHE5 ((polyadenylate-binding protein RBP47-like {ECO:0000313|RefSeq:XP_016463741.1}))
HSP 1 Score: 504.982 bits (1299), Expect = 1.375e-176
Identity = 247/351 (70.37%), Postives = 286/351 (81.48%), Query Frame = 0
Query: 62 QIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQ GSQSDGD SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+NGYGN
Sbjct: 77 QIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRADSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNGYGNH 425
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: O48955 ((Putative RNA binding protein {ECO:0000313|EMBL:AAB92518.1}) (Fragment))
HSP 1 Score: 505.368 bits (1300), Expect = 6.454e-176
Identity = 247/351 (70.37%), Postives = 286/351 (81.48%), Query Frame = 0
Match: O48955 ((Putative RNA binding protein {ECO:0000313|EMBL:AAB92518.1}) (Fragment))
HSP 1 Score: 505.368 bits (1300), Expect = 6.454e-176
Identity = 247/351 (70.37%), Postives = 286/351 (81.48%), Query Frame = 0
Query: 62 QIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQ GSQSDGD SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+NGYGN
Sbjct: 129 QIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRADSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNGYGNH 477
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y726 ((polyadenylate-binding protein RBP47 isoform X1 {ECO:0000313|RefSeq:XP_009794615.1}))
HSP 1 Score: 501.13 bits (1289), Expect = 1.731e-175
Identity = 259/398 (65.08%), Postives = 304/398 (76.38%), Query Frame = 0
Match: A0A1U7Y726 ((polyadenylate-binding protein RBP47 isoform X1 {ECO:0000313|RefSeq:XP_009794615.1}))
HSP 1 Score: 501.13 bits (1289), Expect = 1.731e-175
Identity = 259/398 (65.08%), Postives = 304/398 (76.38%), Query Frame = 0
Query: 16 QQQQQQWLAMQQQYHQQWLAMQQHQQLMYQQQAPQFMPYYQQQQA-AQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
QQ QQQW+AMQ + Q Y Q QQ+ QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MP+ +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQ GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+NGYGN
Sbjct: 2 QQYQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYQQHQQQQNMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPSAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNGYGNH 397
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KK00 ((Polyadenylate-binding protein rbp47 {ECO:0000313|EMBL:OIT29124.1}))
HSP 1 Score: 501.516 bits (1290), Expect = 3.411e-175
Identity = 246/352 (69.89%), Postives = 288/352 (81.82%), Query Frame = 0
Match: A0A314KK00 ((Polyadenylate-binding protein rbp47 {ECO:0000313|EMBL:OIT29124.1}))
HSP 1 Score: 501.516 bits (1290), Expect = 3.411e-175
Identity = 246/352 (69.89%), Postives = 288/352 (81.82%), Query Frame = 0
Query: 61 AQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
AQIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SR+ +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQ GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+NGYGN
Sbjct: 75 AQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQTRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNGYGNH 424
BLAST of XM_017374552.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7XYB5 ((polyadenylate-binding protein RBP47 isoform X2 {ECO:0000313|RefSeq:XP_009794616.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.011e-174
Identity = 245/351 (69.80%), Postives = 287/351 (81.77%), Query Frame = 0
Match: A0A1U7XYB5 ((polyadenylate-binding protein RBP47 isoform X2 {ECO:0000313|RefSeq:XP_009794616.1}))
HSP 1 Score: 500.36 bits (1287), Expect = 1.011e-174
Identity = 245/351 (69.80%), Postives = 287/351 (81.77%), Query Frame = 0
Query: 62 QIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQ----------------GSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQFRGESGNQWNGNSYGKQGYNGY-------QDPNMYGGAATAYGASTNGYGNQ 389
QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MP+ +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQ GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ R +SG+QWNG G+Q Y GY QD MY A AYGAS+NGYGN
Sbjct: 78 QIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPSAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGA-AYGASSNGYGNH 426
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9TRE9 | E-Value: 0.000e+0, PID: 65.68 | (polyadenylate-binding protein RBP47 {ECO:0000313|... [more] |
| A0A2G9H477 | E-Value: 6.105e-179, PID: 65.31 | (Apoptosis-promoting RNA-binding protein TIA-1/TIA... [more] |
| A0A3Q7ESU4 | E-Value: 2.616e-178, PID: 67.73 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| Q2V9C2 | E-Value: 3.113e-178, PID: 66.83 | (DNA-binding protein-like {ECO:0000313|EMBL:ABB862... [more] |
| Q9LEB3 | E-Value: 5.230e-177, PID: 64.52 | Polyadenylate-binding protein RBP47 (Poly(A)-bindi... [more] |
| A0A1S3ZHE5 | E-Value: 1.375e-176, PID: 70.37 | (polyadenylate-binding protein RBP47-like {ECO:000... [more] |
| O48955 | E-Value: 6.454e-176, PID: 70.37 | (Putative RNA binding protein {ECO:0000313|EMBL:AA... [more] |
| A0A1U7Y726 | E-Value: 1.731e-175, PID: 65.08 | (polyadenylate-binding protein RBP47 isoform X1 {E... [more] |
| A0A314KK00 | E-Value: 3.411e-175, PID: 69.89 | (Polyadenylate-binding protein rbp47 {ECO:0000313|... [more] |
| A0A1U7XYB5 | E-Value: 1.011e-174, PID: 69.80 | (polyadenylate-binding protein RBP47 isoform X2 {E... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |