Resource Type:
Polypeptide
Name:
XM_017374553.1
Identifier:
XM_017374553.1-protein
Sequence:
MMSSNPAAGELTPQQQQQQQQWLAMQQQYHQQWLAMQQHQQLMYQQQAPQ
FMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSV
KLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWAT
FSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDT
NTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQ
QQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELR
HTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRL
SWGRNPGNKQR
Sequence Length:
361
Sequence Checksum:
6326a15e1f9ce2950042b8bea990bc5d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374553.1, derives from mRNA, XM_017374553.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7ESU4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108500.3.1}))
HSP 1 Score: 506.138 bits (1302), Expect = 2.003e-178
Identity = 239/323 (73.99%), Postives = 280/323 (86.69%), Query Frame = 0
Match: A0A3Q7ESU4 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g108500.3.1}))
HSP 1 Score: 506.138 bits (1302), Expect = 2.003e-178
Identity = 239/323 (73.99%), Postives = 280/323 (86.69%), Query Frame = 0
Query: 42 LMYQQQAPQFMPYYQQQQ----AAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
+MY QQ +MPYY QQ+ QIQ+SSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF SHAAAEK+LQSYNGT+MPN +Q FRLNWA FS GE+R + GSD SIFVGDLASDVTD++L +TF+SRY +V+GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSRPMR+GVATPKKPS QQQ+SSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G VIGKQ VRLSWGR+P NKQ
Sbjct: 1 MMYGQQ---YMPYYHQQKMQQPPTQIQNSSEDNKTIWIGDLQQWMDESYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNSHAAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVATPKKPS-AQQQFSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAVIGKQAVRLSWGRSPSNKQ 319
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TRE9 ((polyadenylate-binding protein RBP47 {ECO:0000313|RefSeq:XP_011088289.1}))
HSP 1 Score: 496.508 bits (1277), Expect = 6.930e-174
Identity = 251/362 (69.34%), Postives = 290/362 (80.11%), Query Frame = 0
Match: A0A6I9TRE9 ((polyadenylate-binding protein RBP47 {ECO:0000313|RefSeq:XP_011088289.1}))
HSP 1 Score: 496.508 bits (1277), Expect = 6.930e-174
Identity = 251/362 (69.34%), Postives = 290/362 (80.11%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQ-----QHQQLMYQQQAPQFMPYYQQQQ------------------AAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
W+AMQQ Y QQW+AMQ Q +MY Q ++PYY QIQSS E+NKT+WIGDLQ WMDE YL SCF+ +GE VSVK+IRNKQTGQSER+GFIEF SH AAEK+LQSYNGTVMPNT+Q FRLNWA FS+G+RR +AGSD SIFVGDLA+DVTD++L +TF+SR+ +V+GAKVVVD N+GRSKGYGFVRFGDENER RAMTEMNG YCSSRPMRIGVATPKKPS QQQYSSQAV+LAGG N + QG QS+ D+SNTT+FVGGLDSDV DEELR +FS FG+V+SVKIP GKGCGFVQFA+RS+AE +I+++NGTVIGKQTVRLSWGRN GNKQ
Sbjct: 24 WVAMQQ-YQQQWMAMQYPAMAMQQHMMYNQH---YVPYYHPHHLPQQQQYQQQPPPQPPKQNNQIQSSGEDNKTIWIGDLQQWMDEGYLQSCFSQTGEVVSVKIIRNKQTGQSERYGFIEFNSHLAAEKVLQSYNGTVMPNTEQPFRLNWAAFSSGDRRPEAGSDLSIFVGDLATDVTDTLLHDTFASRFPSVKGAKVVVDANSGRSKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIGVATPKKPS-PQQQYSSQAVVLAGG-YPNGIVPQG-QSENDSSNTTIFVGGLDSDVTDEELRQSFSPFGDVVSVKIPAGKGCGFVQFANRSNAEDAIQRLNGTVIGKQTVRLSWGRNMGNKQ 378
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47))
HSP 1 Score: 495.352 bits (1274), Expect = 2.411e-173
Identity = 243/351 (69.23%), Postives = 285/351 (81.20%), Query Frame = 0
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47))
HSP 1 Score: 495.352 bits (1274), Expect = 2.411e-173
Identity = 243/351 (69.23%), Postives = 285/351 (81.20%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQ------------QHQQLMYQQQAPQFMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
WLAMQQ Y QQW+AMQ + Q QQ QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPNT+Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS +QYSSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 24 WLAMQQ-YQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYQQHQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 372
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CFY2 ((RNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066648}))
HSP 1 Score: 493.812 bits (1270), Expect = 9.186e-173
Identity = 242/351 (68.95%), Postives = 287/351 (81.77%), Query Frame = 0
Match: M1CFY2 ((RNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066648}))
HSP 1 Score: 493.812 bits (1270), Expect = 9.186e-173
Identity = 242/351 (68.95%), Postives = 287/351 (81.77%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQ------------QHQQLMYQQQAPQFMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
W+AMQQ Y QQW+AMQ + Q Q QQ QIQ+SSE+NKT+WIGDLQ WMDE+YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FS GE+R + GSD SIFVGDLASDVTD++L +TF+SR+ +V+GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSRPMR+GVATPKKPS QQQ+SSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 23 WVAMQQ-YQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYHQQQQQQKMQQPPTQIQNSSEDNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVATPKKPS-AQQQFSSQAVILSGGYASNGSATHGSQSDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 371
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HSE2 ((Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) {ECO:0000313|EMBL:PIN20448.1}))
HSP 1 Score: 491.5 bits (1264), Expect = 6.278e-172
Identity = 250/357 (70.03%), Postives = 288/357 (80.67%), Query Frame = 0
Match: A0A2G9HSE2 ((Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) {ECO:0000313|EMBL:PIN20448.1}))
HSP 1 Score: 491.5 bits (1264), Expect = 6.278e-172
Identity = 250/357 (70.03%), Postives = 288/357 (80.67%), Query Frame = 0
Query: 19 QQQWLAMQQQYHQQWLAMQQHQQLMYQQQ---------------APQFMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
QQQW+AMQ +AMQQH +MY Q Q P +Q QIQ S E+NKT+WIGDLQ WMDE YL SCF+ SGE VSVK+IRNKQTGQSER+GFIEF SH AAEK+LQSYNGT MPNT+Q FRLNWA FS+G+RR +AGSD SIFVGDLA+DVTD++LL+TF+SRY +V+GAKVVVD N+GRSKGYGFVRFGDENER RAMTEMNG YCSSRPMRIGVATPKKPS QQQ+SSQAV+LAGG AN L QG QS+ D+SNTT+FVGGLDSDV DEELR +F+ FGEV+SVKIP+GKGCGFVQF +RS+AE +++++NGTVIGKQTVRLSWGRN GNKQ
Sbjct: 27 QQQWMAMQYPA----MAMQQH--MMYNQHYVPYYHPHHPHQQQQYQQQPPPQPLKQNNQIQGSGEDNKTIWIGDLQQWMDEGYLQSCFSQSGEVVSVKIIRNKQTGQSERYGFIEFNSHVAAEKVLQSYNGTTMPNTEQPFRLNWAAFSSGDRRPEAGSDLSIFVGDLATDVTDALLLDTFASRYPSVKGAKVVVDANSGRSKGYGFVRFGDENERSRAMTEMNGAYCSSRPMRIGVATPKKPS-PQQQFSSQAVVLAGG-YANGSLPQG-QSENDSSNTTIFVGGLDSDVTDEELRQSFAPFGEVVSVKIPLGKGCGFVQFGNRSNAEDALQRLNGTVIGKQTVRLSWGRNMGNKQ 374
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AM05 ((polyadenylate-binding protein RBP47 isoform X1 {ECO:0000313|RefSeq:XP_010268845.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.361e-171
Identity = 233/342 (68.13%), Postives = 278/342 (81.29%), Query Frame = 0
Match: A0A1U8AM05 ((polyadenylate-binding protein RBP47 isoform X1 {ECO:0000313|RefSeq:XP_010268845.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 1.361e-171
Identity = 233/342 (68.13%), Postives = 278/342 (81.29%), Query Frame = 0
Query: 22 WLAMQQQYHQQWLAMQQHQQLMYQQQAPQFMPYYQQQQAAQIQSSS--EENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQR 361
W+AMQ Y L MQ Q+M Q +MPY+ QQ Q Q +ENKT+W+GDL WMDE YLH+CFA +GE VS+K+IRNKQTGQSE +GF+EF SHAAAEK+L +YNGT MPNT+ FRLNWA+FS GERR DAGSD SIFVGDLA+DVTD++L ETF+SRY +V+GAKVV+D NTGRSKGYGFVRFGDENE+ RAMTEMNG YCSSRPMRIGVATP+K S QQQYSSQA++L GG A+N G QSDGD++NTT+FVGGLD V DE+LR FSQ+GE++SVKIP+GKGCGFVQFA+R++AE +++++NGTVIGKQTVRLSWGRNP NK R
Sbjct: 23 WMAMQ--YPAATLVMQH--QMMPQHYPQPYMPYHHHQQQPQSQQQGSSDENKTIWVGDLHYWMDESYLHNCFAHTGEVVSIKVIRNKQTGQSEGYGFVEFFSHAAAEKVLHNYNGTAMPNTEHPFRLNWASFSMGERRSDAGSDHSIFVGDLAADVTDTLLHETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDENEKSRAMTEMNGVYCSSRPMRIGVATPRKSSAYQQQYSSQALVLVGGYASNGASALGGQSDGDSTNTTIFVGGLDPSVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRTNAEEALQKLNGTVIGKQTVRLSWGRNPANKLR 360
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1CFY1 ((RNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066647}))
HSP 1 Score: 488.419 bits (1256), Expect = 1.495e-171
Identity = 239/346 (69.08%), Postives = 283/346 (81.79%), Query Frame = 0
Match: M1CFY1 ((RNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066647}))
HSP 1 Score: 488.419 bits (1256), Expect = 1.495e-171
Identity = 239/346 (69.08%), Postives = 283/346 (81.79%), Query Frame = 0
Query: 16 QQQQQQWLAMQ-QQYHQQWLAMQQHQQLMYQQQAPQFMPYYQQQQAAQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
QQ QQQW+AMQ + Q Q QQ QIQ+SSE+NKT+WIGDLQ WMDE+YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FS GE+R + GSD SIFVGDLASDVTD++L +TF+SR+ +V+GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSRPMR+GVATPKKPS QQQ+SSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 2 QQYQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYHQQQQQQKMQQPPTQIQNSSEDNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVATPKKPS-AQQQFSSQAVILSGGYASNGSATHGSQSDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 346
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3ZHE5 ((polyadenylate-binding protein RBP47-like {ECO:0000313|RefSeq:XP_016463741.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 2.578e-171
Identity = 229/299 (76.59%), Postives = 266/299 (88.96%), Query Frame = 0
Match: A0A1S3ZHE5 ((polyadenylate-binding protein RBP47-like {ECO:0000313|RefSeq:XP_016463741.1}))
HSP 1 Score: 490.345 bits (1261), Expect = 2.578e-171
Identity = 229/299 (76.59%), Postives = 266/299 (88.96%), Query Frame = 0
Query: 62 QIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
QIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SRY +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQAVIL+GG A+N T GSQSDGD SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 77 QIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 374
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2V9A1 ((DNA binding protein ACBF-like {ECO:0000313|EMBL:ABB86267.1}))
HSP 1 Score: 487.649 bits (1254), Expect = 3.865e-171
Identity = 225/298 (75.50%), Postives = 267/298 (89.60%), Query Frame = 0
Match: Q2V9A1 ((DNA binding protein ACBF-like {ECO:0000313|EMBL:ABB86267.1}))
HSP 1 Score: 487.649 bits (1254), Expect = 3.865e-171
Identity = 225/298 (75.50%), Postives = 267/298 (89.60%), Query Frame = 0
Query: 63 IQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
IQ+SSE+NKT+WIGDLQ WMDE+YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FS GE+R + GSD SIFVGDLASDVTD++L +TF+SR+ +V+GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSRPMR+GVATPKKPS QQQ+SSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDSDV DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 25 IQNSSEDNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAAFSAGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVATPKKPS-AQQQFSSQAVILSGGYASNGSATHGSQSDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 321
BLAST of XM_017374553.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KK00 ((Polyadenylate-binding protein rbp47 {ECO:0000313|EMBL:OIT29124.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 9.141e-171
Identity = 228/300 (76.00%), Postives = 268/300 (89.33%), Query Frame = 0
Match: A0A314KK00 ((Polyadenylate-binding protein rbp47 {ECO:0000313|EMBL:OIT29124.1}))
HSP 1 Score: 489.189 bits (1258), Expect = 9.141e-171
Identity = 228/300 (76.00%), Postives = 268/300 (89.33%), Query Frame = 0
Query: 61 AQIQSSSEENKTLWIGDLQTWMDEHYLHSCFAPSGEAVSVKLIRNKQTGQSERFGFIEFLSHAAAEKILQSYNGTVMPNTDQMFRLNWATFSTGERRQDAGSDQSIFVGDLASDVTDSILLETFSSRYSTVRGAKVVVDTNTGRSKGYGFVRFGDENERLRAMTEMNGQYCSSRPMRIGVATPKKPSTTQQQYSSQAVILAGGAAANAGLTQGSQSDGDTSNTTVFVGGLDSDVGDEELRHTFSQFGEVISVKIPIGKGCGFVQFADRSSAEVSIEQINGTVIGKQTVRLSWGRNPGNKQ 360
AQIQSSSE+NKT+WIGDLQ WMDE YLHSCF+ +GE +SVK+IRNKQTGQSER+GF+EF +HAAAEK+LQSYNGT+MPN +Q FRLNWA FSTGE+R + GSD SIFVGDLASDVTD++L +TF+SR+ +++GAKVVVD NTG SKGYGFVRFGDE+ER RAMTEMNG YCSSR MRIGVATPKKPS QQQYSSQAVIL+GG A+N T GSQSDGD+SNTT+FVGGLDS+V DEELR +F+QFGEV+SVKIP GKGCGFVQF+DRSSA+ +I++++G +IGKQ VRLSWGR+P NKQ
Sbjct: 75 AQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS-AQQQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 373
| Match Name | Stats | Description |
|---|---|---|
| A0A3Q7ESU4 | E-Value: 2.003e-178, PID: 73.99 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A6I9TRE9 | E-Value: 6.930e-174, PID: 69.34 | (polyadenylate-binding protein RBP47 {ECO:0000313|... [more] |
| Q9LEB3 | E-Value: 2.411e-173, PID: 69.23 | Polyadenylate-binding protein RBP47 (Poly(A)-bindi... [more] |
| M1CFY2 | E-Value: 9.186e-173, PID: 68.95 | (RNA binding protein {ECO:0000313|EnsemblPlants:PG... [more] |
| A0A2G9HSE2 | E-Value: 6.278e-172, PID: 70.03 | (Apoptosis-promoting RNA-binding protein TIA-1/TIA... [more] |
| A0A1U8AM05 | E-Value: 1.361e-171, PID: 68.13 | (polyadenylate-binding protein RBP47 isoform X1 {E... [more] |
| M1CFY1 | E-Value: 1.495e-171, PID: 69.08 | (RNA binding protein {ECO:0000313|EnsemblPlants:PG... [more] |
| A0A1S3ZHE5 | E-Value: 2.578e-171, PID: 76.59 | (polyadenylate-binding protein RBP47-like {ECO:000... [more] |
| Q2V9A1 | E-Value: 3.865e-171, PID: 75.50 | (DNA binding protein ACBF-like {ECO:0000313|EMBL:A... [more] |
| A0A314KK00 | E-Value: 9.141e-171, PID: 76.00 | (Polyadenylate-binding protein rbp47 {ECO:0000313|... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |