Resource Type:
Polypeptide
Name:
XM_017374004.1
Identifier:
XM_017374004.1-protein
Sequence:
MGLKIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNF
GIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGD
CFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIP
SALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDE
CGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCK
SQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVW
WDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDN
PVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFE
ETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVV
DGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCV
CPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYI
REHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSE
IRAIMAQYMPLDSQNEIPNHVSDDRA
Sequence Length:
626
Sequence Checksum:
3ce3f6854575d11122e4e81f545dee4e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374004.1, derives from mRNA, XM_017374004.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U619 ((vacuolar-sorting receptor 3 {ECO:0000313|RefSeq:XP_011092498.1}))
HSP 1 Score: 1144.41 bits (2959), Expect = 0.000e+0
Identity = 531/630 (84.29%), Postives = 587/630 (93.17%), Query Frame = 0
Match: A0A6I9U619 ((vacuolar-sorting receptor 3 {ECO:0000313|RefSeq:XP_011092498.1}))
HSP 1 Score: 1144.41 bits (2959), Expect = 0.000e+0
Identity = 531/630 (84.29%), Postives = 587/630 (93.17%), Query Frame = 0
Query: 1 MGLKIKL----FLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
MG I+L LGF VL F ++V+G+FVVEKNS RVTSP+S+KGTHDSAIGNFGIPQYGGSMAG VVYPKDN+KGCK+FDDFGISFK+K G++P FVLVDRGDCFFALKVWN QNAGA+AVLV DD +EPLITMD+PEED +AKYI NITIPSAL+DK+FGEKLK+ IS GDMVNVNLDWRE+VPHPDDRVEYELW+NSNDECG+KCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFTISKQCKSQCINHGRYCAPDPEQDFS+GY+GKDVV+ENLRQLCVF+VANE++ PW+WWDYVTDFQIRCPMKEKKYNKECA+ VI+SLGLD KKIEKCMGDP+ADSDNPVLKEEQDAQ+GKG+RGDVTILPTLVVNNRQYRGKL KGAVLKALC+GFEETTEP+VCL+GDVETNEC+E NGGCW+D +NITACKDTFRGRVCECPVV+GVQFKGDGYSSCVASGPGRCK+++GGCWHE + G TFSAC D +GKC CPPGF+GDGVKSCVD+DECK+KKACQCPECSCKNTWGSYEC CSGD LYIREHDTCIS T AE KSAWTAVW+ILIGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQNE+PNHV +DRA
Sbjct: 1 MGCSIRLKFANLLGFWVLIFTQAVVGRFVVEKNSLRVTSPESIKGTHDSAIGNFGIPQYGGSMAGIVVYPKDNRKGCKNFDDFGISFKAKAGAMPNFVLVDRGDCFFALKVWNAQNAGAAAVLVADDLDEPLITMDSPEEDAASAKYIVNITIPSALVDKNFGEKLKQAISGGDMVNVNLDWREAVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQVLEKGGYTQFTPHYITWYCPQAFTISKQCKSQCINHGRYCAPDPEQDFSTGYEGKDVVLENLRQLCVFRVANETKKPWIWWDYVTDFQIRCPMKEKKYNKECAEGVIRSLGLDLKKIEKCMGDPDADSDNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKALCAGFEETTEPSVCLTGDVETNECLENNGGCWQDTTANITACKDTFRGRVCECPVVNGVQFKGDGYSSCVASGPGRCKISHGGCWHENRNGITFSACVDNEEGKCTCPPGFRGDGVKSCVDIDECKEKKACQCPECSCKNTWGSYECACSGDLLYIREHDTCISKTTAEVKSAWTAVWIILIGLAMAAGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQNEVPNHVHEDRA 630
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1V7I6 ((Vacuolar-sorting receptor 3 {ECO:0000313|EMBL:KAB1208375.1}))
HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0
Identity = 523/622 (84.08%), Postives = 576/622 (92.60%), Query Frame = 0
Match: A0A6A1V7I6 ((Vacuolar-sorting receptor 3 {ECO:0000313|EMBL:KAB1208375.1}))
HSP 1 Score: 1132.86 bits (2929), Expect = 0.000e+0
Identity = 523/622 (84.08%), Postives = 576/622 (92.60%), Query Frame = 0
Query: 5 IKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
++L LGF+V++ S M +FVVEKNS RV SPDS+KGTHDSAIGNFGIPQYGGSMAG VVYP++NKKGC+ FD+FGISFK+KPG LP FVLVDRGDCFFALKVWN Q AGASAVLV DD EE LITMD+PE D +AKYI+NITIPSAL++KSFGEKLKK S GDMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT SKQCKSQCINHGRYCAPDPEQDFS+GY+G+DVV+ENLRQLCVF+VANE++ PW WWDYVTDFQIRCPMKEKKYN+ECAD VIKSLGLD KKIEKCMGDPNADSDNPVLKEEQDAQVGKG+RGDVTILPTLVVNNRQYRGKLAK AVL+A+CSGFEETTEPAVCLSGDVETNEC+E NGGCW+DKA+N+TACKDTFRGRVCECP++DGVQFKGDGY++C ASGPGRCK+NNGGCWHE++ GH FSACSD G+ KC CPPGFKGDGVKSC D+DECK+KKACQCPECSCKNTWGSY+CTCSGD LYIR+HDTCIS A E KSAW AVWVILIGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ E+PNHV+D+ A
Sbjct: 8 LRLLLGFLVVSLIPSSMARFVVEKNSLRVISPDSIKGTHDSAIGNFGIPQYGGSMAGIVVYPRENKKGCRGFDEFGISFKTKPGGLPPFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDSPEADGSSAKYIENITIPSALIEKSFGEKLKKAYSAGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTSSKQCKSQCINHGRYCAPDPEQDFSTGYEGRDVVVENLRQLCVFRVANENKKPWTWWDYVTDFQIRCPMKEKKYNRECADGVIKSLGLDMKKIEKCMGDPNADSDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLAKVAVLRAICSGFEETTEPAVCLSGDVETNECLENNGGCWQDKAANLTACKDTFRGRVCECPLLDGVQFKGDGYTTCEASGPGRCKINNGGCWHESREGHAFSACSDNGEIKCQCPPGFKGDGVKSCKDIDECKEKKACQCPECSCKNTWGSYDCTCSGDLLYIRDHDTCISKNARETKSAWAAVWVILIGLAMAAGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQGEVPNHVNDEHA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QME2 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1130.93 bits (2924), Expect = 0.000e+0
Identity = 523/620 (84.35%), Postives = 580/620 (93.55%), Query Frame = 0
Match: A0A5N6QME2 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1130.93 bits (2924), Expect = 0.000e+0
Identity = 523/620 (84.35%), Postives = 580/620 (93.55%), Query Frame = 0
Query: 7 LFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
L LGF+V++ S M +FVVEKNS RVTSPDS+KGTHDSAIGNFGIPQYGGSMAG VVYPKDNKKGCK FD+FGISFK+KPG+LPTFV++DRGDCFFALKVWN QNAGASAVLV DD EEPLITMD+PEED +AKYI+NITIPSAL++K FGE LKK S G+MVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+SKQCKSQCINHGRYCAPDPEQDFS+GY+GKDVV+ENLRQLCVF+VANE++ PWVWWDYVTDFQIRCPMKEKKYNK+CAD+VIKSLG+D KKIEKCMGD NADS+NPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKL KGAVLKA+C+GFEETTEPAVCLS DVETNEC++ NGGCW+DKA+N+TACKDTFRGRVCECP+VDGVQFKGDGY++C ASGPGRCK+NNG CWH ++ GHTFSACSD G+ KC CPPGFKGDGVKSC D+DEC++KKACQCPECSCKNTWGSY+C+CSGD LYIR+HDTCIS +A++ KSAW AVWVILIGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ EIPNHV D+RA
Sbjct: 10 LLLGFLVVSLIPSSMARFVVEKNSLRVTSPDSIKGTHDSAIGNFGIPQYGGSMAGVVVYPKDNKKGCKVFDEFGISFKAKPGALPTFVVLDRGDCFFALKVWNAQNAGASAVLVADDIEEPLITMDSPEEDGSSAKYIENITIPSALIEKRFGEALKKAFSAGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYEGKDVVLENLRQLCVFRVANETKKPWVWWDYVTDFQIRCPMKEKKYNKDCADAVIKSLGVDIKKIEKCMGDANADSENPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLDKGAVLKAICAGFEETTEPAVCLSSDVETNECLDNNGGCWQDKAANLTACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGDCWHASRDGHTFSACSDNGEVKCQCPPGFKGDGVKSCEDIDECREKKACQCPECSCKNTWGSYDCSCSGDLLYIRDHDTCISKSASQTKSAWAAVWVILIGLAMAAGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQAEIPNHV-DERA 628
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5EYD5 ((GPCR, family 2, CD97 antigen {ECO:0000313|EMBL:PON90549.1}))
HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0
Identity = 520/623 (83.47%), Postives = 577/623 (92.62%), Query Frame = 0
Match: A0A2P5EYD5 ((GPCR, family 2, CD97 antigen {ECO:0000313|EMBL:PON90549.1}))
HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0
Identity = 520/623 (83.47%), Postives = 577/623 (92.62%), Query Frame = 0
Query: 5 IKLFLGFMVLNFCE-SVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
++LFLGF+VL+ S+ G+FVVEKNS RVTSPD ++GTHDSAIGNFGIPQYGGSMAG VVYPKDN+KGCK F DFGISF+SKPG+LPTFVLVDRGDCFFALKVWN Q AGASAVLV DD EE LITMD+PEED AKYI+NITIPSAL++K FGE LKK +S+ DMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+SKQCKSQCINHGRYCAPDPEQDFSSGYDGK+VV+ENLRQLCVFKVAN+++ PW+WWDYVTDFQIRCPMKEKKYNKECAD+VI+SLGLD K +EKCMGDPNADS+NPVLKEEQDAQVGKG+RGDVTILPTLVVNNRQYRGKL KGAVLKA+CSGFEETTEP VCLSGDVETNEC++ NGGCW DK++N+TACKDTFRGRVCECP+VDGVQFKGDGY++C ASGPGRCK+NNGGCWHE + GH FSAC+D G+ KC CPPGFKGDGV SCVD+DECK++KACQC ECSCKNTWGSYECTC GD LYIR+HDTCIS TA E +SAW AVWVILIGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ+E+PNHVS++ A
Sbjct: 9 MRLFLGFLVLSLAPLSLHGRFVVEKNSLRVTSPDRIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNQKGCKEFSDFGISFQSKPGALPTFVLVDRGDCFFALKVWNAQKAGASAVLVADDMEEALITMDSPEEDGSTAKYIENITIPSALIEKGFGETLKKAVSSRDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPEAFTLSKQCKSQCINHGRYCAPDPEQDFSSGYDGKEVVLENLRQLCVFKVANDTKKPWIWWDYVTDFQIRCPMKEKKYNKECADAVIQSLGLDLKSVEKCMGDPNADSENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPTVCLSGDVETNECLDNNGGCWHDKSANLTACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARDGHAFSACTDNGEVKCECPPGFKGDGVNSCVDIDECKERKACQCSECSCKNTWGSYECTCGGDLLYIRDHDTCISKTARETRSAWAAVWVILIGLAMAAGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQSEVPNHVSENHA 631
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4PXQ1 ((vacuolar-sorting receptor 3 isoform X1 {ECO:0000313|RefSeq:XP_017642132.1, ECO:0000313|RefSeq:XP_017642133.1}))
HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0
Identity = 522/624 (83.65%), Postives = 573/624 (91.83%), Query Frame = 0
Match: A0A6P4PXQ1 ((vacuolar-sorting receptor 3 isoform X1 {ECO:0000313|RefSeq:XP_017642132.1, ECO:0000313|RefSeq:XP_017642133.1}))
HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0
Identity = 522/624 (83.65%), Postives = 573/624 (91.83%), Query Frame = 0
Query: 3 LKIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
L+ L GFM+L+ + +FVVEKNS VTSP+ +KGTHDSAIGNFGIPQYGGSMAG VVYPK+N+K CKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQ AGASAVLV DD EE LITMD PEED +AKYI+NITIPSAL++K+FGE LKK IS GDMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+S+QCKSQCINHGRYCAPDPEQDFSSGY+GKDVVIENLRQLCVFKVANE+ PWVWWDYVTDFQIRCPMKEKKYNKECAD VIKSLGLD+K+IEKCMGDP+AD +NPVLKEEQDAQVGKG+RGDVTILPTLVVNNRQYRGKLAKGAVLKA+C+GFEETTEPAVCLSGDVETNEC+E NGGCW+DKA+N+TAC+DTFRGRVCECP+VDGVQFKGDGYS C + GPGRCK+NNGGCWHE++ G +SAC D GD KC CPPGFKGDGVKSC D+DECK+K+ACQCPECSCKNTWGSYECTC+GD LYIR+HDTCIS + E +SAW A+WVILIGLAMA GGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ E+PNHVS+DRA
Sbjct: 6 LQHHLLQGFMLLSLISNCYARFVVEKNSLTVTSPEKIKGTHDSAIGNFGIPQYGGSMAGVVVYPKENQKACKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQQAGASAVLVADDIEEALITMDNPEEDSSSAKYIENITIPSALIEKTFGETLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVIENLRQLCVFKVANETNRPWVWWDYVTDFQIRCPMKEKKYNKECADGVIKSLGLDAKRIEKCMGDPDADMENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLAKGAVLKAICAGFEETTEPAVCLSGDVETNECLENNGGCWQDKAANLTACRDTFRGRVCECPLVDGVQFKGDGYSHCESGGPGRCKINNGGCWHESRNGRAYSACLDNGDVKCQCPPGFKGDGVKSCEDIDECKEKRACQCPECSCKNTWGSYECTCNGDLLYIRDHDTCISKSGTEVRSAWAAMWVILIGLAMAGGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQGEVPNHVSNDRA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D3AA00 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1127.08 bits (2914), Expect = 0.000e+0
Identity = 522/624 (83.65%), Postives = 572/624 (91.67%), Query Frame = 0
Match: A0A5D3AA00 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1127.08 bits (2914), Expect = 0.000e+0
Identity = 522/624 (83.65%), Postives = 572/624 (91.67%), Query Frame = 0
Query: 3 LKIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
L+ L GFM+L+ + +FVVEKNS VTSP+ +KGTHDSAIGNFGIPQYGGSMAG VVYPK+N+K CKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQ AGASAVLV DD EE LITMD PEED +AKYI+NITIPSAL++K+FGE LKK IS GDMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+S+QCKSQCINHGRYCAPDPEQDFSSGY+GKDVVIENLRQLCVFKVANE+ PWVWWDYVTDFQIRCPMKEKKYNKECAD VIKSLGLD+K+IEKCMGDP+AD +NPVLKEEQDAQVGKG+RGDVTILPTLVVNNRQYRGKLAKGAVLKA+C+GFEETTEPAVCLSGDVETNEC+E NGGCW+DKA+N+TAC+DTFRGRVCECP+VDGVQFKGDGYS C GPGRCK+NNGGCWHE++ G +SAC D GD KC CPPGFKGDGVKSC D+DECK+K+ACQCPECSCKNTWGSYECTC+GD LYIR+HDTCIS + E +SAW A+WVILIGLAMA GGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ E+PNHVS+DRA
Sbjct: 6 LQHHLLQGFMLLSLISNCYARFVVEKNSLTVTSPEKIKGTHDSAIGNFGIPQYGGSMAGVVVYPKENQKACKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQQAGASAVLVADDIEEALITMDNPEEDSSSAKYIENITIPSALIEKTFGETLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVIENLRQLCVFKVANETNRPWVWWDYVTDFQIRCPMKEKKYNKECADGVIKSLGLDAKRIEKCMGDPDADMENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLAKGAVLKAICAGFEETTEPAVCLSGDVETNECLENNGGCWQDKAANLTACRDTFRGRVCECPLVDGVQFKGDGYSHCEPGGPGRCKINNGGCWHESRNGRAYSACLDNGDVKCQCPPGFKGDGVKSCEDIDECKEKRACQCPECSCKNTWGSYECTCNGDLLYIRDHDTCISKSGTEVRSAWAAMWVILIGLAMAGGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQGEVPNHVSNDRA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HQF4 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1127.08 bits (2914), Expect = 0.000e+0
Identity = 526/624 (84.29%), Postives = 581/624 (93.11%), Query Frame = 0
Match: A0A2G9HQF4 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1127.08 bits (2914), Expect = 0.000e+0
Identity = 526/624 (84.29%), Postives = 581/624 (93.11%), Query Frame = 0
Query: 3 LKIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
LK+ L F++L F E V G+FVVEKNS RVTSP+++KG HDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFK+K G++P FVLVDRGDCFFALKVWN QNAGA+AVLV DD +EPLITMDTPE D +AKYI NITIPSAL+DKSFGEKLKK IS GDMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFTISKQCKSQCINHGRYCAPDPEQDFSSGY+GKDVVIENLRQLCVF+VANE++ PWVWWDYVTDFQ+RCPMKEKKYNK+CA+ VIKSLGLD KKIEKCMGDP+ADSDNPVLKEEQDAQVGKG+RGDVTILPTLVVNN QYRGKL +GAVLKA+CSGFEETTEP+VCLSGDVETNEC++ NGGCW+DK++NITACKDTFRGRVCECP+V+GVQFKGDGYSSCVASGPGRCK+++GGCWHE++ G TFSAC D +GKC CPPGFKGDGVK+C D+DEC +KKACQCPECSCK+TWGSYECTCSGD LYIREHDTCIS + E +SAWTAVWVI IGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQNE+PNH+++D A
Sbjct: 7 LKVSTQLWFLLLIFTELVAGRFVVEKNSLRVTSPENIKGPHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKAKAGAMPNFVLVDRGDCFFALKVWNAQNAGAAAVLVADDLDEPLITMDTPEADGASAKYIANITIPSALVDKSFGEKLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTISKQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVIENLRQLCVFRVANETKKPWVWWDYVTDFQVRCPMKEKKYNKDCAEGVIKSLGLDLKKIEKCMGDPDADSDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNHQYRGKLERGAVLKAICSGFEETTEPSVCLSGDVETNECLDNNGGCWQDKSANITACKDTFRGRVCECPIVNGVQFKGDGYSSCVASGPGRCKISHGGCWHESRNGITFSACVDNEEGKCTCPPGFKGDGVKNCEDIDECTEKKACQCPECSCKDTWGSYECTCSGDLLYIREHDTCISKS-TEVRSAWTAVWVIFIGLAMAAGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQNEVPNHLNEDHA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2RKE9 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1126.69 bits (2913), Expect = 0.000e+0
Identity = 521/624 (83.49%), Postives = 573/624 (91.83%), Query Frame = 0
Match: A0A5D2RKE9 (EGF-like domain-containing protein {ECO:0000259|PROSITE:PS01186})
HSP 1 Score: 1126.69 bits (2913), Expect = 0.000e+0
Identity = 521/624 (83.49%), Postives = 573/624 (91.83%), Query Frame = 0
Query: 3 LKIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
L+ L GFM+L+ + +FVVEKNS VTSP+ +KGTHDSAIGNFGIPQYGGSMAG VVYPK+N+K CKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQ AGASAVLV DD EE LITMD PEED +AKYI+NITIPSAL++K+FGE LKK IS GDMVNVNLDWRE+VPHPDDRVEYELWTNSNDECG+KCDMLM FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+S+QCKSQCINHGRYCAPDPEQDFSSGY+GKDVVIENLRQLCVFKVANE+ PWVWWDYVTDFQIRCPMKEKKYNKECAD VIKSLGLD+K+IEKCMGDP+AD +NPVLKEEQDAQVGKG+RGDVTILPTLVVNNRQYRGKLAKGAVLKA+C+GFEETTEPAVCLSGDVETNEC+E NGGCW+DKA+N+TAC+DTFRGRVCECP+VDG+QFKGDGYS C GPGRCK+NNGGCWH+++ G +SAC DKGD KC CPPGFKGDGVKSC D+DECK+K+ACQCPECSCKNTWGSYECTC+GD LYIR+HDTCIS + E +SAW A+WVILIGLAMA GGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ E+PNHVS+DRA
Sbjct: 6 LQHHLLQGFMLLSLISNCYARFVVEKNSLTVTSPEKIKGTHDSAIGNFGIPQYGGSMAGVVVYPKENQKACKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQQAGASAVLVADDIEEALITMDNPEEDSSSAKYIENITIPSALIEKTFGETLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVIENLRQLCVFKVANETNRPWVWWDYVTDFQIRCPMKEKKYNKECADGVIKSLGLDAKRIEKCMGDPDADMENPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLAKGAVLKAICAGFEETTEPAVCLSGDVETNECLENNGGCWQDKAANLTACRDTFRGRVCECPLVDGMQFKGDGYSHCEPGGPGRCKINNGGCWHQSRNGRAYSACLDKGDVKCQCPPGFKGDGVKSCEDIDECKEKRACQCPECSCKNTWGSYECTCNGDLLYIRDHDTCISKSGTEVRSAWAAMWVILIGLAMAGGGAYLVYKYRLRSYMDSEIRAIMAQYMPLDSQGEVPNHVSNDRA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8DZ41 ((vacuolar-sorting receptor 3 isoform X2 {ECO:0000313|RefSeq:XP_016539431.1}))
HSP 1 Score: 1126.31 bits (2912), Expect = 0.000e+0
Identity = 526/627 (83.89%), Postives = 577/627 (92.03%), Query Frame = 0
Match: A0A1U8DZ41 ((vacuolar-sorting receptor 3 isoform X2 {ECO:0000313|RefSeq:XP_016539431.1}))
HSP 1 Score: 1126.31 bits (2912), Expect = 0.000e+0
Identity = 526/627 (83.89%), Postives = 577/627 (92.03%), Query Frame = 0
Query: 1 MGL-KIKLFLGFMVLNFCESVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
MG+ K +FLGF+ L+ +SV+ +FVVEKNS RV SPD +KGT+DSAIGNFGIPQYGGS+ GTVVYPK+N+KGC++FDDFG SFKSK G++PTFVLVDRGDCFFALKVWN QNAGA+AVLV DD +E LITMD+PE D +AKYI+NITIPSAL++KSF EKLKK +S+G+MVNVNLDWRESVPHPDDRVEYELWT+SNDECG KCDMLM +VKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFT+SKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANE++ PWVWWDYVTDFQIRCPMKEKKYNKECAD VIKSLGLDS+KIEKCMGDPNAD DNPVLKEEQDAQ+GKGTRGDVTILPTLVVNNRQYRGKL KGAVLKA+C+GFEETTEPAVCLS DVETNEC+E NGGCW DKA+NITACKDTFRGRVCECPVVDGVQFKGDGYSSC ASG GRCK+NNGGCWH+++ GHT+SAC D +GKC CPPGFKGDGVKSC D+DECK KKACQCPECSCKNTWGSYEC+CSGD LYIR+HDTCIS A E KSAW AVW ILIGLAMA GGAY+VYKYR RSYMDSEIRAIMAQYMPLDSQNE+PNHVSD+RA
Sbjct: 3 MGVSKATIFLGFLYLSLFQSVLCRFVVEKNSLRVVSPDDIKGTYDSAIGNFGIPQYGGSLPGTVVYPKENRKGCRNFDDFGTSFKSKSGAMPTFVLVDRGDCFFALKVWNAQNAGAAAVLVADDVDERLITMDSPEADGSSAKYIENITIPSALIEKSFAEKLKKAVSSGEMVNVNLDWRESVPHPDDRVEYELWTSSNDECGFKCDMLMKYVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTVSKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKECADGVIKSLGLDSRKIEKCMGDPNADEDNPVLKEEQDAQIGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKAICAGFEETTEPAVCLSDDVETNECLENNGGCWHDKAANITACKDTFRGRVCECPVVDGVQFKGDGYSSCTASGRGRCKLNNGGCWHDSRDGHTYSACVDDEEGKCSCPPGFKGDGVKSCEDIDECKQKKACQCPECSCKNTWGSYECSCSGDLLYIRDHDTCISKRAKEVKSAWAAVWAILIGLAMAGGGAYLVYKYRWRSYMDSEIRAIMAQYMPLDSQNEVPNHVSDERA 629
BLAST of XM_017374004.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B1A7 ((Putative Vaculolar sorting receptor 3 isoform 1 {ECO:0000313|EMBL:MPA62569.1}))
HSP 1 Score: 1126.31 bits (2912), Expect = 0.000e+0
Identity = 521/608 (85.69%), Postives = 572/608 (94.08%), Query Frame = 0
Match: A0A5B7B1A7 ((Putative Vaculolar sorting receptor 3 isoform 1 {ECO:0000313|EMBL:MPA62569.1}))
HSP 1 Score: 1126.31 bits (2912), Expect = 0.000e+0
Identity = 521/608 (85.69%), Postives = 572/608 (94.08%), Query Frame = 0
Query: 19 SVMGKFVVEKNSFRVTSPDSLKGTHDSAIGNFGIPQYGGSMAGTVVYPKDNKKGCKSFDDFGISFKSKPGSLPTFVLVDRGDCFFALKVWNVQNAGASAVLVVDDTEEPLITMDTPEEDVKAAKYIQNITIPSALLDKSFGEKLKKVISNGDMVNVNLDWRESVPHPDDRVEYELWTNSNDECGIKCDMLMDFVKDFKGAAQLLERGGYTQFTPHYITWYCPMAFTISKQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVIENLRQLCVFKVANESQTPWVWWDYVTDFQIRCPMKEKKYNKECADSVIKSLGLDSKKIEKCMGDPNADSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLAKGAVLKALCSGFEETTEPAVCLSGDVETNECMEKNGGCWEDKASNITACKDTFRGRVCECPVVDGVQFKGDGYSSCVASGPGRCKVNNGGCWHETKGGHTFSACSDKGDGKCVCPPGFKGDGVKSCVDVDECKDKKACQCPECSCKNTWGSYECTCSGDNLYIREHDTCISTTAAEGKSAWTAVWVILIGLAMAAGGAYMVYKYRLRSYMDSEIRAIMAQYMPLDSQNEIPNHVSDDRA 626
S + +FVVEKNS RVTSPDS+KGTHDSAIGNFGIPQYGGSMAGTVVYPK+N+KGC+ FD+FGISFKSK G+LPTFVLVDRGDCFFALKVWN Q AGASAVLV D+ EE LITMDTPEED +AKYI+NITIPSAL+ KSFGEKLKK S G+MVNVNLDWRE+VPHPDDRVEY+LWTNSNDECGIKCDMLM+FVKDFKGAAQ+LE+GGYTQFTPHYITWYCP AFTISKQCKSQCINHGRYCAPDPEQDFS+GY+GKDVV+ENLRQLCVF+VANE++ PW+WWDYVTDFQIRCPMKEKKYNKECADSVI+SLGLD KKIEKCMGDPNADSDNPVLKEEQDAQ+GKG+RGDVTILPTLVVNNRQYRGKL KGAVLKA+CSGFEETTEPAVCLSGDVETNEC++ NGGCW+DK +NITACKDTFRGRVCECP+VDGV+FKGDGYS+C ASGPGRCK+N+GGCWHET+ GH +SAC D D KC CPPGFKGDG+KSC D+DEC++KKACQCPECSCKNTWGSYECTCSGD+LYIR+HDTCIS +A + KSAW AVWVILIGLAMAAGGAY+VYKYRLRSYMDSEIRAIMAQYMPLDSQ E+PNHVS+DRA
Sbjct: 22 SAIARFVVEKNSLRVTSPDSIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENRKGCRGFDEFGISFKSKSGALPTFVLVDRGDCFFALKVWNAQKAGASAVLVADEIEEALITMDTPEEDSSSAKYIENITIPSALIGKSFGEKLKKSTSGGEMVNVNLDWREAVPHPDDRVEYQLWTNSNDECGIKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTISKQCKSQCINHGRYCAPDPEQDFSTGYEGKDVVLENLRQLCVFRVANETKKPWIWWDYVTDFQIRCPMKEKKYNKECADSVIRSLGLDIKKIEKCMGDPNADSDNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANITACKDTFRGRVCECPMVDGVKFKGDGYSTCQASGPGRCKINSGGCWHETRDGHYYSACLDIEDSKCKCPPGFKGDGIKSCEDIDECREKKACQCPECSCKNTWGSYECTCSGDHLYIRDHDTCISKSATKVKSAWAAVWVILIGLAMAAGGAYIVYKYRLRSYMDSEIRAIMAQYMPLDSQAEVPNHVSEDRA 629
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9U619 | E-Value: 0.000e+0, PID: 84.29 | (vacuolar-sorting receptor 3 {ECO:0000313|RefSeq:X... [more] |
| A0A6A1V7I6 | E-Value: 0.000e+0, PID: 84.08 | (Vacuolar-sorting receptor 3 {ECO:0000313|EMBL:KAB... [more] |
| A0A5N6QME2 | E-Value: 0.000e+0, PID: 84.35 | EGF-like domain-containing protein {ECO:0000259|PR... [more] |
| A0A2P5EYD5 | E-Value: 0.000e+0, PID: 83.47 | (GPCR, family 2, CD97 antigen {ECO:0000313|EMBL:PO... [more] |
| A0A6P4PXQ1 | E-Value: 0.000e+0, PID: 83.65 | (vacuolar-sorting receptor 3 isoform X1 {ECO:00003... [more] |
| A0A5D3AA00 | E-Value: 0.000e+0, PID: 83.65 | EGF-like domain-containing protein {ECO:0000259|PR... [more] |
| A0A2G9HQF4 | E-Value: 0.000e+0, PID: 84.29 | EGF-like domain-containing protein {ECO:0000259|PR... [more] |
| A0A5D2RKE9 | E-Value: 0.000e+0, PID: 83.49 | EGF-like domain-containing protein {ECO:0000259|PR... [more] |
| A0A1U8DZ41 | E-Value: 0.000e+0, PID: 83.89 | (vacuolar-sorting receptor 3 isoform X2 {ECO:00003... [more] |
| A0A5B7B1A7 | E-Value: 0.000e+0, PID: 85.69 | (Putative Vaculolar sorting receptor 3 isoform 1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |