XM_017374561.1

Resource Type: 
Polypeptide
Name: 
XM_017374561.1
Identifier: 
XM_017374561.1-protein
Sequence: 
MALLVHLHNPCCSITNFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNIL
SSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFD
IKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVP
EGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVS
IRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGL
KDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGS
GAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKA
IVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHE
DLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGT
EPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVG
TPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGV
PAVAASGAIVANSLVSVSQHLQLLDAVGI
Sequence Length: 
579
Sequence Checksum: 
c47465d1bbbae37f0d742b90cb169c41
View location in JBrowse: 
DCARv2_Chr1:19410976..19417668-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017374561.1, derives from mRNA, XM_017374561.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BHU7 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593})

HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 481/572 (84.09%), Postives = 518/572 (90.56%), Query Frame = 0
 
Query:   16 NFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNILSST--------GKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
             F  NS  R  R    FLARNS+    +P + N   ST        GK EADV+VIGSGIGGLCCAGLLARY+QDVLVLESH LPGGAAHSF+IKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE IPCV YDSWKVY+PEGEFLS IGPTEFFKDLE+YA  DAVREW+KLLDAILP+S AAMALPP+SIRGDWGVLSTAAARYAP+L+KSFAQMGP+GALGATKLLRPFSEI+DSL LKDPFIRNW+DLL+FLLAGVKS+G+LSAEMVYMFAEWYKP C+LEYPL GSGA+VDALVRG+QKFGGRISLRSHVE IVVENGRAVGVKLR+GQFVRA+KA+VSNASMWDTLNLLP  V+PKSYQDRI+ TPQCESFMHLHLGFD+EG+ EDLGIHHIVVN+W+RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPFGLWEGLDR+S++YKKLK ERSEVMW AVERALGPGF+REKCEVKLVGTPLTH+R+LRRNRGTYGPAIQAGKDTFPGH TPIP LY CGDSTFPGIGVPAVAASGAIVANSLVSVSQH QLL AVGI
Sbjct:   25 KFKFNSQSRKKRTP--FLARNSNGNEPSPSSSNGSPSTTTLNNPFPGKPEADVVVIGSGIGGLCCAGLLARYNQDVLVLESHRLPGGAAHSFEIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESIPCVNYDSWKVYIPEGEFLSHIGPTEFFKDLEKYASLDAVREWKKLLDAILPLSAAAMALPPLSIRGDWGVLSTAAARYAPSLLKSFAQMGPQGALGATKLLRPFSEIMDSLELKDPFIRNWIDLLAFLLAGVKSNGVLSAEMVYMFAEWYKPGCSLEYPLHGSGAVVDALVRGIQKFGGRISLRSHVENIVVENGRAVGVKLRSGQFVRAKKAVVSNASMWDTLNLLPSHVIPKSYQDRIKMTPQCESFMHLHLGFDAEGIGEDLGIHHIVVNNWERGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFGLWEGLDRRSTEYKKLKAERSEVMWRAVERALGPGFNREKCEVKLVGTPLTHQRYLRRNRGTYGPAIQAGKDTFPGHSTPIPHLYRCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLSAVGI 594
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8EMJ1 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593})

HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 477/579 (82.38%), Postives = 519/579 (89.64%), Query Frame = 0
 
Query:    1 MALLVHLHNPCCSITNFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNILSSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            MAL    + P   I  FN+NS  R  +    FL RN  S ++  P+   +S  GK+EAD++VIGSGIGGLCCAGLLARY QDVLVLESHD+ GGAAHSFDIKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE IPC+ YDSW VYVPEGEFLSRIGPTEFFKDLE+YAGPD+ REWRKLLDAILPMS AAMALPP+SIRGD GVLSTAAARYAP+L+KSFAQMGP+GALGATKLLRPFS+I+DSLG+KDPFIRNW+DLL+FLLAGVK++GILSAEMVYMF+EWYKP CTLEYPL GSGAIVDAL+RG+QKFGGRISLRSHVE IVVENGRAVGVKLR GQFV A+KA+VSNASMWDTL+LLP EVVPKSYQDRIE T QCESFMHLHLGFD+EG+ +DLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPF +WEGLDR+S++YK LK ERSEVMW AVE+ALGPGF REKCEVKLVGTPLTH+RFLRRNRGTYGPAI AGK TFPGH TPIPQL CCGDSTFPGIGVPAVAASGAIVANSLVSV++H QLLDAVGI
Sbjct:    1 MALRFLQYQPFSPI--FNINSHNRKQK----FLIRNEVSISSTIPSKQSIS--GKSEADIVVIGSGIGGLCCAGLLARYGQDVLVLESHDVAGGAAHSFDIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESIPCINYDSWMVYVPEGEFLSRIGPTEFFKDLEKYAGPDSAREWRKLLDAILPMSAAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFAQMGPQGALGATKLLRPFSDIIDSLGIKDPFIRNWLDLLAFLLAGVKTNGILSAEMVYMFSEWYKPGCTLEYPLHGSGAIVDALIRGLQKFGGRISLRSHVENIVVENGRAVGVKLRGGQFVSAKKAVVSNASMWDTLSLLPPEVVPKSYQDRIETTKQCESFMHLHLGFDAEGIPDDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFEMWEGLDRRSNEYKNLKAERSEVMWKAVEKALGPGFYREKCEVKLVGTPLTHQRFLRRNRGTYGPAILAGKSTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVSVTEHSQLLDAVGI 571
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2YCJ8 ((prolycopene isomerase, chloroplastic {ECO:0000313|RefSeq:XP_016548432.1}))

HSP 1 Score: 977.237 bits (2525), Expect = 0.000e+0
Identity = 477/579 (82.38%), Postives = 519/579 (89.64%), Query Frame = 0
 
Query:    1 MALLVHLHNPCCSITNFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNILSSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            MAL    + P   I  FN+NS  R  +    FL RN  S ++  P+   +S  GK+EAD++VIGSGIGGLCCAGLLARY QDVLVLESHD+ GGAAHSFDIKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE IPC+ YDSW VYVPEGEFLSRIGPTEFFKDLE+YAGPD+ REWRKLLDAILPMS AAMALPP+SIRGD GVLSTAAARYAP+L+KSFAQMGP+GALGATKLLRPFS+I+DSLG+KDPFIRNW+DLL+FLLAGVK++GILSAEMVYMF+EWYKP CTLEYPL GSGAIVDAL+RG+QKFGGRISLRSHVE IVVENGRAVGVKLR GQFV A+KA+VSNASMWDTL+LLP EVVPKSYQDRIE T QCESFMHLHLGFD+EG+ +DLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPF +WEGLDR+S++YK LK ERSEVMW AVE+ALGPGF REKCEVKLVGTPLTH+RFLRRNRGTYGPAI AGK TFPGH TPIPQL CCGDSTFPGIGVPAVAASGAIVANSLVSV++H QLLDAVGI
Sbjct:    1 MALRFLQYQPFSPI--FNINSHNRKQK----FLIRNEVSISSTIPSKQSIS--GKSEADIVVIGSGIGGLCCAGLLARYGQDVLVLESHDVAGGAAHSFDIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESIPCINYDSWMVYVPEGEFLSRIGPTEFFKDLEKYAGPDSAREWRKLLDAILPMSAAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFAQMGPQGALGATKLLRPFSDIIDSLGIKDPFIRNWLDLLAFLLAGVKTNGILSAEMVYMFSEWYKPGCTLEYPLHGSGAIVDALIRGLQKFGGRISLRSHVENIVVENGRAVGVKLRGGQFVSAKKAVVSNASMWDTLSLLPPEVVPKSYQDRIETTKQCESFMHLHLGFDAEGIPDDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFEMWEGLDRRSNEYKNLKAERSEVMWKAVEKALGPGFYREKCEVKLVGTPLTHQRFLRRNRGTYGPAILAGKSTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVSVTEHSQLLDAVGI 571
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067L5E5 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593})

HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 477/584 (81.68%), Postives = 522/584 (89.38%), Query Frame = 0
 
Query:    1 MALLVHLHNPCCSITNFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNIL-----SSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            MAL +   +P  +    +L S  R S    + +ARNS+    +    N+L     S  GK EADV+VIGSGIGGLCCAGLLARY QDVL+LESHDLPGGAAHSF IK YKFDSGPSLFSGLQSRG QANPLAQVLDALGE  PCVKYDSW VYVPEGEFLSRIGPTEF+KDLE+YAGP+AV EW+KLLDAILP+S+AAMALPP+SIRGD GVLSTAAARYAP+L++SF QMGP+GALGATKLLRPFSEIVDSL LKDPFIRNWVDLL+FLLAGVKS+GILSAEM+YMFAEWYKP C+LEYPL GSGA+VDALVRG+QKFGGR+SLRSHVE IV++N RA+GVKLR+GQF+RARKA++SNASMWDTLNLLPKEV+PKSY DRI  TPQCESFMHLHLGFD+EG+ EDLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPF LWEGLDR+S++YK+LK ERSEVMW AVERALGPGFSREKCEVKLVGTPLTH+RFLRRNRGTYGPAIQAGKDTFPGH TPI QLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH QLLDA+GI
Sbjct:    1 MALSI---SPNFTAQYHSLFSSFRPSSNRKTIVARNSNGNELSS-NGNLLVKDKTSFPGKPEADVVVIGSGIGGLCCAGLLARYKQDVLLLESHDLPGGAAHSFQIKDYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESPPCVKYDSWMVYVPEGEFLSRIGPTEFYKDLEKYAGPNAVEEWKKLLDAILPLSSAAMALPPLSIRGDLGVLSTAAARYAPSLLQSFIQMGPQGALGATKLLRPFSEIVDSLELKDPFIRNWVDLLAFLLAGVKSNGILSAEMIYMFAEWYKPGCSLEYPLHGSGAVVDALVRGLQKFGGRLSLRSHVENIVIDNNRAIGVKLRSGQFIRARKAVISNASMWDTLNLLPKEVLPKSYTDRINTTPQCESFMHLHLGFDAEGIREDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWEGLDRRSTEYKQLKAERSEVMWKAVERALGPGFSREKCEVKLVGTPLTHRRFLRRNRGTYGPAIQAGKDTFPGHSTPISQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI 580
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3B6P9 (Amino_oxidase domain-containing protein {ECO:0000259|Pfam:PF01593})

HSP 1 Score: 976.082 bits (2522), Expect = 0.000e+0
Identity = 476/579 (82.21%), Postives = 519/579 (89.64%), Query Frame = 0
 
Query:    1 MALLVHLHNPCCSITNFNLNSGVRTSRRAGSFLARNSSSATTAPPTPNILSSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            MAL    + P   I  FN+NS  R  +    FL RN  S ++  P+   +S  GK+EAD++VIGSGIGGLCCAGLLARY QDVLVLESHD+ GGAAHSFDIKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE IPC+ YDSW VYVPEGEFLSRIGPTEFFKDLE+YAGPD+ REWRKLLDA+LPMS AAMALPP+SIRGD GVLSTAAARYAP+L+KSFAQMGP+GALGATKLLRPFS+I+DSLG+KDPFIRNW+DLL+FLLAGVK++GILSAEMVYMF+EWYKP CTLEYPL GSGAIVDAL+RG+QKFGGRISLRSHVE IVVENGRAVGVKLR GQFV A+KA+VSNASMWDTL+LLP EVVPKSYQDRIE T QCESFMHLHLGFD+EG+ +DLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPF +WEGLDR+S++YK LK ERSEVMW AVE+ALGPGF REKCEVKLVGTPLTH+RFLRRNRGTYGPAI AGK TFPGH TPIPQL CCGDSTFPGIGVPAVAASGAIVANSLVSV++H QLLDAVGI
Sbjct:    1 MALRFLQYQPFSPI--FNINSHNRKQK----FLIRNEVSISSTIPSKQSIS--GKSEADIVVIGSGIGGLCCAGLLARYGQDVLVLESHDVAGGAAHSFDIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESIPCINYDSWMVYVPEGEFLSRIGPTEFFKDLEKYAGPDSAREWRKLLDAMLPMSAAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFAQMGPQGALGATKLLRPFSDIIDSLGIKDPFIRNWLDLLAFLLAGVKTNGILSAEMVYMFSEWYKPGCTLEYPLHGSGAIVDALIRGLQKFGGRISLRSHVENIVVENGRAVGVKLRGGQFVSAKKAVVSNASMWDTLSLLPPEVVPKSYQDRIETTKQCESFMHLHLGFDAEGIPDDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFEMWEGLDRRSNEYKNLKAERSEVMWKAVEKALGPGFYREKCEVKLVGTPLTHQRFLRRNRGTYGPAILAGKSTFPGHSTPIPQLLCCGDSTFPGIGVPAVAASGAIVANSLVSVTEHSQLLDAVGI 571
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218XJ85 ((prolycopene isomerase, chloroplastic {ECO:0000313|RefSeq:XP_031390948.1}))

HSP 1 Score: 974.156 bits (2517), Expect = 0.000e+0
Identity = 469/562 (83.45%), Postives = 512/562 (91.10%), Query Frame = 0
 
Query:   18 NLNSGVRTSRRAGSFLARNSSSATTAPPTPNILSSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
             L +G R S RA +  AR S+ A T        S  GK EADV+VIGSGIGGLCCAGLLARY QDVLVLESHD PGGAAH+F+I GY FDSGPSLFSG QSRG QANPLAQVLDALGE +PC  YDSW VY+P+ EFLSRIGPTEFFKDLE+YAGP+AV+EWRKL+DA+LP+STAAMALPP+S+RGD GVLSTAAARYAP+L+KSF QMGP+GALGATKLLRPFSEIVDSL LKDPFIRNWVDLL+FLLAGVKS+GILSAEM+YMFAEWYKP C+L+YPL GSGAIVDAL+RG+QKFGGRISLRSHV++IVVENGRAVGVKLR+GQFVRA+KA+VSNASMWDTL+LLPKE VPKSY DRI  TPQCESFMHLHLGFD+EG+ EDLGIHHIVVNDW+RGVDADQNVVLISVP+VLSP LAPPGKHVLHAYTPGTEP+ LWEGLDR+SS+YKKLK ERSEVMW AVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKD+FPGH TPI QLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS+H +LLDAVGI
Sbjct:   20 KLIAGRRGSSRARTVSARTSTEAYTPSKEKTGSSFPGKPEADVVVIGSGIGGLCCAGLLARYQQDVLVLESHDQPGGAAHAFNINGYTFDSGPSLFSGFQSRGPQANPLAQVLDALGESVPCTNYDSWMVYIPDAEFLSRIGPTEFFKDLEKYAGPNAVQEWRKLMDAVLPLSTAAMALPPLSVRGDLGVLSTAAARYAPSLLKSFIQMGPQGALGATKLLRPFSEIVDSLELKDPFIRNWVDLLAFLLAGVKSNGILSAEMIYMFAEWYKPGCSLDYPLHGSGAIVDALIRGMQKFGGRISLRSHVKSIVVENGRAVGVKLRSGQFVRAKKAVVSNASMWDTLSLLPKEAVPKSYADRINATPQCESFMHLHLGFDAEGIPEDLGIHHIVVNDWERGVDADQNVVLISVPTVLSPDLAPPGKHVLHAYTPGTEPYELWEGLDRRSSEYKKLKAERSEVMWRAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDSFPGHSTPIAQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSKHTELLDAVGI 581
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1PNZ6 ((FAD/NAD(P)-binding oxidoreductase family protein {ECO:0000313|EMBL:PWA87465.1}))

HSP 1 Score: 968.763 bits (2503), Expect = 0.000e+0
Identity = 466/563 (82.77%), Postives = 509/563 (90.41%), Query Frame = 0
 
Query:   24 RTSRRAGSFLARNSSSATTAPP-------TPNILSSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            R S  +   LAR SS+ T                S  GK EADV+VIGSG+GGLCCAGLLARY +DVLVLESHDLPGGAAHSF+IK YKFDSGPSLFSG QSRGLQANPLAQVLDALGE IPC KYDSW VYVPEGEFLSRIGPTEFFKDLE YAGP+AV EWRKLLD+ILP+S AAMALPP+SIRGD GVLSTA ARYA +L+KSFAQMGP+GALGATKLLRPFSE+VDSLGLKDPFIRNW+DLLSFLLAGVKSDG+LSAEM+YMFAEWYKP C+LEYPL GSGA+VDALVRG+QKFGGRI+LRSHVE IVVEN RAVGVKLR+GQFVRA+KA+VSNASMWDTL LLPKE VP SY++RI+ T QCESFMHLHLGFD+EG+ +DLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEP+ LWEGLDR+S++YK+LK+ERSEVMW AVER+LGPGFSR+KCEVK+VGTPLTH+RFLRRNRGTYGPAIQAGKD+FPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV+QH +LLDAVGI
Sbjct:   41 RQSSSSCIVLARTSSNVTEEAASSSSSSTVAQTKSFPGKPEADVVVIGSGLGGLCCAGLLARYGKDVLVLESHDLPGGAAHSFEIKDYKFDSGPSLFSGFQSRGLQANPLAQVLDALGESIPCAKYDSWMVYVPEGEFLSRIGPTEFFKDLETYAGPNAVLEWRKLLDSILPLSAAAMALPPLSIRGDLGVLSTAGARYALSLLKSFAQMGPQGALGATKLLRPFSEVVDSLGLKDPFIRNWIDLLSFLLAGVKSDGVLSAEMIYMFAEWYKPGCSLEYPLGGSGALVDALVRGLQKFGGRIALRSHVENIVVENDRAVGVKLRSGQFVRAKKAVVSNASMWDTLKLLPKEAVPNSYEERIQNTKQCESFMHLHLGFDAEGIRDDLGIHHIVVNDWSRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPYELWEGLDRRSAEYKQLKEERSEVMWKAVERSLGPGFSRDKCEVKMVGTPLTHQRFLRRNRGTYGPAIQAGKDSFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVAQHSELLDAVGI 603
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836J006 ((Prolycopene isomerase {ECO:0000313|EMBL:KAG5248442.1}))

HSP 1 Score: 967.992 bits (2501), Expect = 0.000e+0
Identity = 459/526 (87.26%), Postives = 499/526 (94.87%), Query Frame = 0
 
Query:   54 GKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            GK+EADV+VIGSGIGGLCCAGLLARY QDVLVLESHD+PGGAAHSFDIKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE +PCV YDSW VYVPEGEFLSRIGPTEF+KDLERYAGP+A++EW+KLLDAILP+S+AAMALPP+SIRGD+GVLSTAAARYAP+L+KSF QMGP+GALGATKLLRPFSEIVDSL LKDPFIRNWVDLL+FLLAGVKS+GILSAEM+YMFAEWYKP C+LEYPL G+GAIVDALVRG+QKFGGR+SLRSHVE IVVEN RA GVKLR+GQF+RA+KA++SNASMWDT NLLPKEV+PKSY D+I  TPQCESFMHLHLGFD+E + +DLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKH+LHAYTPGTEPF LWEGLDR+SS+YK+LK ERSEVMW AVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAI+AGK+TFPGH TPI QLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH QLLDA+GI
Sbjct:   57 GKSEADVVVIGSGIGGLCCAGLLARYQQDVLVLESHDVPGGAAHSFDIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESVPCVNYDSWMVYVPEGEFLSRIGPTEFYKDLERYAGPNAMQEWKKLLDAILPLSSAAMALPPLSIRGDFGVLSTAAARYAPSLLKSFLQMGPQGALGATKLLRPFSEIVDSLELKDPFIRNWVDLLAFLLAGVKSNGILSAEMIYMFAEWYKPGCSLEYPLHGTGAIVDALVRGLQKFGGRLSLRSHVEEIVVENNRATGVKLRSGQFIRAKKAVISNASMWDTSNLLPKEVLPKSYLDKINTTPQCESFMHLHLGFDAECIQKDLGIHHIVVNDWSRGVDADQNVVLISVPSVLSPDLAPPGKHLLHAYTPGTEPFELWEGLDRRSSEYKQLKAERSEVMWRAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIEAGKNTFPGHSTPISQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI 582
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200PZS7 ((Carotene isomerase {ECO:0000313|EMBL:OVA03655.1}))

HSP 1 Score: 967.222 bits (2499), Expect = 0.000e+0
Identity = 472/572 (82.52%), Postives = 514/572 (89.86%), Query Frame = 0
 
Query:   16 NFNLNS-GVRTSRRAGSFLAR------NSSSATTAPPTPNILSS-TGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            +FNLNS   +  R   + LAR       SS++   PP+P   S   GK EADV+VIGSGIGGL CAGLLARY QDVLVLESHDLPGGAAHSF+IKGYKFDSGPSLFSG QSRG QANPLAQVLDALGE +PC  YDSW VYVPEGEFLSRIGPTEF KDLE+Y   DAV+EW+KLLDAILPMS AAMALPP+SIRGD GVLSTAAARYAP+L+KSF +MGP+GALGATKLLRPFSEI+DSL LK+PF+RNWVDLL FLLAGVKS+G LSAEMVYMFAEWYKP CTLEYPL GSGA+VDALVRG+QKFGGR+SL SHVE IVVENGRA+GVKLR+GQF+RA+KA+VSNASMWDTLNLLPKEVVPKSYQ+R+E+T QCESFMHLHLGFD+E + EDLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPFGLWEGLDRKSS+YK LK ERSEVMW+AVERALG GFSREKCEVKL+GTPLTHKRFLRRNRGTYGPAIQAGKD+FPGH +PIPQL+CCGDSTFPGIGVPAVAASGAIVANSLVSVSQH +LLDA+GI
Sbjct:   11 HFNLNSFNFKFPRENRTVLARISNGQQPSSNSNGYPPSPKQKSPFLGKQEADVVVIGSGIGGLSCAGLLARYKQDVLVLESHDLPGGAAHSFEIKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESVPCAAYDSWMVYVPEGEFLSRIGPTEFLKDLEKYVSLDAVKEWKKLLDAILPMSAAAMALPPLSIRGDLGVLSTAAARYAPSLLKSFIEMGPQGALGATKLLRPFSEIIDSLELKNPFVRNWVDLLCFLLAGVKSNGTLSAEMVYMFAEWYKPGCTLEYPLHGSGAVVDALVRGLQKFGGRLSLGSHVENIVVENGRAIGVKLRSGQFIRAKKAVVSNASMWDTLNLLPKEVVPKSYQERVERTEQCESFMHLHLGFDAECIPEDLGIHHIVVNDWNRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFGLWEGLDRKSSEYKSLKAERSEVMWSAVERALGSGFSREKCEVKLIGTPLTHKRFLRRNRGTYGPAIQAGKDSFPGHSSPIPQLFCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIGI 582
[Close]
BLAST of XM_017374561.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UK83 ((Putative FAD/NAD(P)-binding oxidoreductase family protein {ECO:0000313|EMBL:OTG23463.1}))

HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 457/529 (86.39%), Postives = 500/529 (94.52%), Query Frame = 0
 
Query:   51 SSTGKAEADVIVIGSGIGGLCCAGLLARYDQDVLVLESHDLPGGAAHSFDIKGYKFDSGPSLFSGLQSRGLQANPLAQVLDALGEPIPCVKYDSWKVYVPEGEFLSRIGPTEFFKDLERYAGPDAVREWRKLLDAILPMSTAAMALPPVSIRGDWGVLSTAAARYAPTLIKSFAQMGPRGALGATKLLRPFSEIVDSLGLKDPFIRNWVDLLSFLLAGVKSDGILSAEMVYMFAEWYKPNCTLEYPLQGSGAIVDALVRGVQKFGGRISLRSHVETIVVENGRAVGVKLRTGQFVRARKAIVSNASMWDTLNLLPKEVVPKSYQDRIEKTPQCESFMHLHLGFDSEGMHEDLGIHHIVVNDWKRGVDADQNVVLISVPSVLSPALAPPGKHVLHAYTPGTEPFGLWEGLDRKSSKYKKLKDERSEVMWNAVERALGPGFSREKCEVKLVGTPLTHKRFLRRNRGTYGPAIQAGKDTFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHLQLLDAVGI 579
            S +GKAEADV+VIGSG+GGLCCAGLLARY +DV+VLESHDLPGGAAHSF++K YKFDSGPSLFSG QSRGLQANPLAQVLDALGE IPC KYDSW VYVPEGEFLSRIGPTEFFKDLE YAGPDAV EWRKLLDAILP+S AAMALPP+SIRGD GVLSTA ARYA +L+KSFAQMGP+GALGATKLLRPFS++V+SLGLKDPFIRNW+DLLSFLLAGVKSDG+LSAEM+YMFAEWYKP C+LEYP  GSGA+VDALVRG++KFGG+I L+SHV+ IV+ENGRAVGVKLR+GQFVRA++A+VSNASMWDTL LLPKE +PKSY++RIE T QCESFMHLHLGFD+EG+ EDLGIHHIVVNDW RGVDADQNVVLISVPSVLSP LAPPGKHVLHAYTPGTEPF LWEGLDRKS++YK+LK ERSEVMW AVER+LGPGFSR+KCEVKLVGTPLTH+RFLRRNRGTYGPAI+AGKD+FPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH QLLDAVGI
Sbjct:   57 SFSGKAEADVVVIGSGLGGLCCAGLLARYGKDVIVLESHDLPGGAAHSFEVKDYKFDSGPSLFSGFQSRGLQANPLAQVLDALGESIPCAKYDSWMVYVPEGEFLSRIGPTEFFKDLEMYAGPDAVLEWRKLLDAILPLSAAAMALPPLSIRGDLGVLSTAGARYALSLLKSFAQMGPKGALGATKLLRPFSDVVNSLGLKDPFIRNWIDLLSFLLAGVKSDGVLSAEMIYMFAEWYKPGCSLEYPFGGSGAVVDALVRGLKKFGGQIYLKSHVDNIVIENGRAVGVKLRSGQFVRAKQAVVSNASMWDTLKLLPKEAIPKSYEERIENTKQCESFMHLHLGFDAEGIPEDLGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFQLWEGLDRKSAEYKQLKAERSEVMWKAVERSLGPGFSRDKCEVKLVGTPLTHQRFLRRNRGTYGPAIEAGKDSFPGHPTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAVGI 585
Match NameStatsDescription
A0A5B7BHU7E-Value: 0.000e+0, PID: 84.09Amino_oxidase domain-containing protein {ECO:00002... [more]
A0A1U8EMJ1E-Value: 0.000e+0, PID: 82.38Amino_oxidase domain-containing protein {ECO:00002... [more]
A0A2G2YCJ8E-Value: 0.000e+0, PID: 82.38(prolycopene isomerase, chloroplastic {ECO:0000313... [more]
A0A067L5E5E-Value: 0.000e+0, PID: 81.68Amino_oxidase domain-containing protein {ECO:00002... [more]
A0A2G3B6P9E-Value: 0.000e+0, PID: 82.21Amino_oxidase domain-containing protein {ECO:00002... [more]
A0A218XJ85E-Value: 0.000e+0, PID: 83.45(prolycopene isomerase, chloroplastic {ECO:0000313... [more]
A0A2U1PNZ6E-Value: 0.000e+0, PID: 82.77(FAD/NAD(P)-binding oxidoreductase family protein ... [more]
A0A836J006E-Value: 0.000e+0, PID: 87.26(Prolycopene isomerase {ECO:0000313|EMBL:KAG524844... [more]
A0A200PZS7E-Value: 0.000e+0, PID: 82.52(Carotene isomerase {ECO:0000313|EMBL:OVA03655.1})[more]
A0A251UK83E-Value: 0.000e+0, PID: 86.39(Putative FAD/NAD(P)-binding oxidoreductase family... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.