Resource Type:
Polypeptide
Name:
XM_017402361.1
Identifier:
XM_017402361.1-protein
Sequence:
MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLG
GNDDDRSIRFMDGKGLNPKSFSMSFGRGNVACVNAVNHHSVSEEDEPNFE
DGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGT
KRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDIL
GRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQ
PIPNCAELDLQTHSLPNVQCSKENNVSEAEAEEDSEDDDGDSDSENDNPA
DQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQR
VSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLK
HKVVEMDSGNQGPSVNQIHNPNRQQVKNQIDLGRHL
Sequence Length:
436
Sequence Checksum:
922b7b08e79f82416935fc5f30bcf29d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017402361.1, derives from mRNA, XM_017402361.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSG9 ((Putative stress response protein nst1-like isoform X1 {ECO:0000313|EMBL:MPA71655.1}))
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 289/461 (62.69%), Postives = 342/461 (74.19%), Query Frame = 0
Match: A0A5B7BSG9 ((Putative stress response protein nst1-like isoform X1 {ECO:0000313|EMBL:MPA71655.1}))
HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 289/461 (62.69%), Postives = 342/461 (74.19%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQ--MPSTMNMLGGNDDDRSIRFMDGKGLNPKSFSMSFGRGN-VACVNAVNHHS--VSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVSEAEAEE---DSEDDDGDSDSENDNPADQDFETFGRANAH-----EDG-----------FQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIH-NPNRQQVKNQIDLGRH 435
MDN +GSGFL GPS GF+DLES + + QQ+Q G S H M S+ N + G ++D I M+ KG N K FSM+FG+G V V+A+N+++ SEEDEP+F EDGNGEN +GAKGKKGSPWQRMKWTD +VRLLI VVACVGDDG+L+G +G KR SG+LQKKGKWK VSKIMISKGCYVSPQQCEDKFNDLNKRYKRLN+ILGRG SCRVVE P+LMDSMPQLS KMKEDVKKILSSKHLFY+EMCAYHNGQ IPNC +LDLQ HSLP V+ SK+NN SE E E +SED++ D + N+ D D E G + EDG F+AE+ F+DPTKS WEQ W KK+ML+LQ+QRVSIQAE+FEL+KR FKW+RFC KK ELE S+LENERM LENE MA+QLK K +E+D S + N +R Q ++QIDLGRH
Sbjct: 1 MDNPGLGSGFLSGPSGGFLDLESSIHRHQQTQFGHPSHTHHHHMQSSFNTMTGLENDHPIGLMEAKGSNQKGFSMNFGKGKAVVPVHALNNNNNNTSEEDEPSFTEDGNGENFNGAKGKKGSPWQRMKWTDNVVRLLIAVVACVGDDGTLEGVEGLKRKSGVLQKKGKWKMVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRVVEDPTLMDSMPQLSVKMKEDVKKILSSKHLFYKEMCAYHNGQRIPNCNDLDLQVHSLPLVRWSKDNNGSEEEEAEQNGESEDNESDDEENNNAAGDVDVERIGEYSEQKKPNEEDGNFWSQSTAQDVFEAELTEVFQDPTKSLWEQRDWIKKRMLQLQEQRVSIQAEAFELEKRHFKWQRFCSKKERELERSRLENERMALENEHMALQLKQKELEIDFKRPDASFDPASLNSDRLQGRDQIDLGRH 461
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AFW9 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 523.472 bits (1347), Expect = 2.020e-176
Identity = 280/458 (61.14%), Postives = 334/458 (72.93%), Query Frame = 0
Match: A0A5J5AFW9 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 523.472 bits (1347), Expect = 2.020e-176
Identity = 280/458 (61.14%), Postives = 334/458 (72.93%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDDRSIRFMDGKGLNPKSFSMSFGRGN-VACVNAVNHHS---VSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVS-EAEAEEDSEDDDGDSDSENDNPADQDFETFGRANAH-----EDG-----------FQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVN-QIHNPNRQQVKNQIDLGRH 435
MDN +GSGFL GP+ GF+ Q S H M S+MNM+ G + D I M+ KG N K FSM+FG+G V V+AVN+++ SEEDEP+F +DGNGEN +GAKGKKGSPWQRMKWTD +VRLLI VVACVGDDG+L+G +G KR SG+LQKKGKWK VSKIMISKG YVSPQQCEDKFNDLNKRYKRLN+ILGRG SCRVVE P+LMDS+PQLS+KMKEDVKKILSSKHLFY+EMCAYHNGQ IPNC +LDLQ HSLP V+ SK+NN S E EAE + E +D +SD E++N A D E G + EDG F+AE+ F+DPTK+ WEQ W KK+ML+LQ+QRVSIQA++FEL+KR FKW+RFC KK ELE S+LENERM LENERM +QLK K +E+D S + N +R Q ++QIDLG H
Sbjct: 1 MDNPDLGSGFLSGPNGGFLS-----QFGHPSHAHHHHHHHHMQSSMNMMTGLESDYPIGLMEAKGSNQKGFSMNFGKGKAVVPVHAVNNNNNNNTSEEDEPSFTDDGNGENFNGAKGKKGSPWQRMKWTDNVVRLLIAVVACVGDDGTLEGVEGLKRKSGVLQKKGKWKMVSKIMISKGSYVSPQQCEDKFNDLNKRYKRLNEILGRGTSCRVVEDPTLMDSIPQLSAKMKEDVKKILSSKHLFYKEMCAYHNGQRIPNCNDLDLQVHSLPLVRWSKDNNGSDEEEAEHNGESEDNESDDEDNNNAGDDVEKIGEYSEQKKPNEEDGNFWPQSTAQDVFEAELTEVFQDPTKTIWEQREWIKKRMLQLQEQRVSIQADAFELEKRHFKWQRFCSKKERELERSRLENERMTLENERMVLQLKQKELEIDFKRSDASFDPACLNSDRLQGRDQIDLGTH 453
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FH56 ((uncharacterized protein LOC108998738 {ECO:0000313|RefSeq:XP_018830974.1}))
HSP 1 Score: 484.567 bits (1246), Expect = 2.340e-167
Identity = 261/458 (56.99%), Postives = 334/458 (72.93%), Query Frame = 0
Match: A0A2I4FH56 ((uncharacterized protein LOC108998738 {ECO:0000313|RefSeq:XP_018830974.1}))
HSP 1 Score: 484.567 bits (1246), Expect = 2.340e-167
Identity = 261/458 (56.99%), Postives = 334/458 (72.93%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDDRS--IRFMDGKGLNPKSFSMSFGRGN-VACVNAVNHHSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVSEAEAEEDSEDDDGDSDSENDNPADQDFETFGRANAHE----------------DGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMD----SGNQGPSVNQIHNPNRQQVKNQIDLGR 434
MD++ +G GF+ P+ +DLES + + QQ+QLG S +HQ MN++ G + D + M+ KG K SM+F +G +A NA N +++SEEDEP+F EDG G+N G GK+GSPWQRMKWTD +VRLLI VV+CVGDDG+L+G +G KR SG+LQKKGKWKTVSKIM+SKGC+VSPQQCEDKFNDLNKRYKRLNDILGRG SCRVVE P+LMDSMPQLS+K K+DVKKILSSKHLFY+EMCAYHNGQ IPNC +LDLQ HSLP +CSK+N SE EAEE+++ +D + D+++DN A+ D E G + E D F+AE+A FEDPTKS WE+ W K++ML+L++QRV+ QAE+FEL+K+RFKW R+C KK+ ELE +LENERM LENER +QL+ K +E+D + GP+ I +R Q ++ IDL R
Sbjct: 1 MDSSGLGGGFMSSPNGAILDLESSIHRHQQTQLGHPSLRHQ--HHMNLMSGLESDHHPPVGLMEEKGTVMKCMSMNFSKGKAIAPANAPNSNNMSEEDEPSFTEDGYGDNVDG--GKRGSPWQRMKWTDDVVRLLIAVVSCVGDDGTLEGGEGLKRKSGILQKKGKWKTVSKIMMSKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPQLSAKAKDDVKKILSSKHLFYKEMCAYHNGQRIPNCEDLDLQGHSLPLGRCSKDNTGSEEEAEENNDSEDDEIDNDDDNNAEGDVERMGEFSGREKVSEEDGHFWSQSVALDNFEAEIAEIFEDPTKSLWERREWIKRQMLQLEEQRVNFQAEAFELEKQRFKWLRYCSKKDRELERLRLENERMKLENERSVLQLRQKELEIDLRRSEASIGPTSVGI---DRLQGRDHIDLSR 451
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WPT5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 482.641 bits (1241), Expect = 1.220e-166
Identity = 268/465 (57.63%), Postives = 326/465 (70.11%), Query Frame = 0
Match: A0A4V3WPT5 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 482.641 bits (1241), Expect = 1.220e-166
Identity = 268/465 (57.63%), Postives = 326/465 (70.11%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDDRSIRFMDGKG-LNPKSFSMSFGRGNVACVNAVNHHS---VSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKEN------------------------NVSEAEAEEDSEDDDGDSDSENDNPADQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIH-NPNRQQVKNQIDLGRH 435
M+N+ +G GFL GPS GF+DLES +Q+ QQ+ M S +NM+ G ++D SI FM+ KG K F ++FG+G + + SEEDEP++ EDGNGEN SG KGKKGSPWQRMKWTD IVRLLI VVACVGDDG+LD +G KR SG LQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYK+LNDILGRG SCRVVE P+LMDSMPQLS+KMKE V+KILSSKHLFY+EMCAYHNGQ +PNC +LDLQ HSLP V+ SK+N N++ + E E E+ P ++D + +++A GF+AE+ F+DPTKS+WE+ W KK+ML+LQ+QRVSIQ E+FEL+KR FKW RFC KK ELE S+LENERM+LENERMA+QLK K +EMD S N +R Q ++QIDLG+H
Sbjct: 1 MENSGLGGGFLSGPSGGFLDLESSIQRHQQT----HHHHRHMQSPINMISGLENDHSIEFMEAKGSTTHKGFPINFGKGKAVVSGNAGNSNNNNTSEEDEPSYTEDGNGENFSGGKGKKGSPWQRMKWTDNIVRLLIAVVACVGDDGTLDSVEGLKRKSGALQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKKLNDILGRGTSCRVVEDPTLMDSMPQLSAKMKEVVRKILSSKHLFYKEMCAYHNGQRMPNCNDLDLQVHSLPLVRYSKDNNGSEEEEAGENGESESDESDDEDKNITGGDMERIGE------YGEHKKPNEEDCSIWSQSSAL-GGFEAEMTEIFQDPTKSQWEKRDWIKKQMLQLQEQRVSIQVEAFELEKRCFKWRRFCSKKERELERSRLENERMILENERMALQLKQKELEMDLKRSDASFEPTSLNTDRLQERDQIDLGKH 454
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GBB2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 484.567 bits (1246), Expect = 1.922e-166
Identity = 270/459 (58.82%), Postives = 330/459 (71.90%), Query Frame = 0
Match: A0A7J7GBB2 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 484.567 bits (1246), Expect = 1.922e-166
Identity = 270/459 (58.82%), Postives = 330/459 (71.90%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDDRSIRFMDGKG-LNPKSFSMSFGRGNVACVNAVNHHS---VSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVSEAEAEEDSEDDD-------------GDSD-----SENDNPADQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIH-NPNRQQVKNQIDLGRH 435
M+N+ +G GFL GPS GF+DLES +Q+ QQ+ M S +NM+ G ++D SI FM+ KG K F ++FG+G + + SEEDEP++ EDGNGEN SG KGKKGSPWQRMKWTD IVRLLI VVACVGDDG+LD +G KR SG LQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYK+LNDILGRG SCRVVE P+LMDSMPQL +KMKE V+KILSSKHLFY+EMCAYHNGQ +PNC +LDLQ HSLP V+ SK+NN SE E ++ + + GD + E+ P ++D + +++A GF+AE+ F+DPTKS+WE+ W KK+ML+LQ+QRVSIQ E+FEL+KR FKW RFC KK ELE S+LENERM+LENERMA+QLK K +EMD S N +R Q ++QIDLG+H
Sbjct: 68 MENSGLGGGFLSGPSGGFLDLESSIQRHQQT----HHHHRHMQSPINMISGLENDHSIEFMEAKGSTTHKGFPINFGKGKAVVSGNAGNSNNNNTSEEDEPSYTEDGNGENFSGGKGKKGSPWQRMKWTDNIVRLLIAVVACVGDDGTLDSVEGLKRKSGALQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKKLNDILGRGTSCRVVEDPTLMDSMPQLPAKMKEVVRKILSSKHLFYKEMCAYHNGQRMPNCNDLDLQVHSLPLVRYSKDNNGSEEEEAGENGESESDESDDEDKNITGGDMERIGEYGEHKKPNEEDCSIWSQSSAL-GGFEAEMTEIFQDPTKSQWEKRDWIKKQMLQLQEQRVSIQVEAFELEKRCFKWRRFCSKKERELERSRLENERMILENERMALQLKQKELEMDLKRSDASFEPTSLNTDRLQERDQIDLGKH 521
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251J809 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 479.945 bits (1234), Expect = 1.398e-165
Identity = 257/459 (55.99%), Postives = 330/459 (71.90%), Query Frame = 0
Match: A0A251J809 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 479.945 bits (1234), Expect = 1.398e-165
Identity = 257/459 (55.99%), Postives = 330/459 (71.90%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDD-RSIRFMDGKGLNPKSFSMSFGRGN-VACVNAVNHHSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVSEAEAEEDSEDD---------------DGD--SDSENDNPADQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMD----SGNQGPSVNQIHNPNRQQVKNQIDLGRH 435
MDN+ +G FL GP+ G +DLESP+ ++QQ+QLG HQ + MN++GG D+D +++ + KG PK +S +F +G V+ +NA N+ + SE+DEP+F ED NGENSSGAKGKKGS WQRMKWTD +VRLLI VVACVGDD +G G KR SG+LQKKGKWKTVSKIM+SKGC+VSPQQCEDKFNDLNKRYKRLNDILGRG SCRVVE P+LMDSMP LS+K K+DV+KILSSKHLFY+EMCAYHNGQ IPNC +LDLQ SLP +CSK+N+ SE E E +D DG+ E DN +++D + ++ GF+ E+A F+DPT S WE+ W KK+ L++ +QRVSIQA++FEL+K+ FKW R+C KK+ E E +LENER+ LENE+ +QL+ K +EMD +Q P+ + +R Q ++QIDLGRH
Sbjct: 1 MDNSGLGGRFLSGPTGGLLDLESPIHRQQQTQLGHPPLTHQ--NHMNLIGGLDNDHQTMGLTEVKGSIPKGYSANFSKGKAVSPLNAANNGNASEDDEPSFTEDWNGENSSGAKGKKGSQWQRMKWTDNVVRLLIAVVACVGDDN--EGVDGLKRKSGILQKKGKWKTVSKIMMSKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPHLSAKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNCQDLDLQGCSLPRERCSKDNDGSEEEEAEGHDDSDDDEWDGEDDSNAKVDGERMGKYERDNVSEEDAHLWTQSGGCT-GFEVEMAGIFQDPTVSVWEKKEWIKKQKLQVLEQRVSIQAQAFELEKQHFKWLRYCSKKDREFERLRLENERIKLENEQSILQLRQKQLEMDFRSSKTSQDPTSFGV---DRIQARDQIDLGRH 451
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZU49 ((uncharacterized protein LOC110412152 {ECO:0000313|RefSeq:XP_021278297.1}))
HSP 1 Score: 471.085 bits (1211), Expect = 4.710e-162
Identity = 266/458 (58.08%), Postives = 331/458 (72.27%), Query Frame = 0
Match: A0A6J0ZU49 ((uncharacterized protein LOC110412152 {ECO:0000313|RefSeq:XP_021278297.1}))
HSP 1 Score: 471.085 bits (1211), Expect = 4.710e-162
Identity = 266/458 (58.08%), Postives = 331/458 (72.27%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMP--STMNMLGGNDDDRSIRFMDGKGLNPKSFSMSFGRG-NVACVNAVNHHSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVSEAEAEE--DSEDDDGDSDSENDNPADQDFETFGRAN----------------AHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIH-NPNRQQVKNQIDLGRH 435
M+N+ +G GFL GPS G DLES + ++Q+ QLGQ S MP + + M G +D RS M+ KG NPK F MSFG+G V+ + A+N+ S+SEEDEP + EDGNGENS G KGKKGSPWQRMKWTD +VRLLI VVACVGDDG ++G +G KR SG+LQKKGKWKTVSKIMISKGC+VSPQQCEDKFNDLNKRYK+LNDILGRG SCRVVE PSLMDSMP LS+K K+DVKKILSSKHLFYQEMCAYHNGQ IPNC +LDLQ +P +C K+NN S+ E E D +DD + D+ +DN AD D E G N A +D + E+A F+DPT+S EQ W K+++L+LQ++RV++Q E+FEL+K+RFKW R+C KK ELE +LENERM LENE+ +QL+ K +E+ + S++ +R Q ++QIDLGRH
Sbjct: 1 MENSGLGGGFLSGPSGGLFDLESSINRQQKPQLGQPSL---MPHHNMVLMSGLENDHRSTGVMEAKGCNPKGFPMSFGKGKGVSPIGAMNNGSMSEEDEPCYTEDGNGENSIGGKGKKGSPWQRMKWTDNVVRLLIAVVACVGDDGMIEGVEGPKRKSGILQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGTSCRVVENPSLMDSMPHLSAKAKDDVKKILSSKHLFYQEMCAYHNGQRIPNCQDLDLQGCFVPIDRCLKDNNGSDEEEAEGHDDSEDDDEMDNVDDNIADGDDERIGELNERKKASAEEGHFWSQSAEQDSLKVEMAGIFQDPTRSSLEQKEWIKRQILQLQEERVNLQMEAFELEKQRFKWLRYCNKKGRELERLRLENERMRLENEQSILQLRQKELEVGFRSSDASLDPTSLGIDRLQSRDQIDLGRH 455
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9S6Z6 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 470.7 bits (1210), Expect = 4.998e-162
Identity = 252/441 (57.14%), Postives = 323/441 (73.24%), Query Frame = 0
Match: W9S6Z6 (Myb_DNA-bind_4 domain-containing protein {ECO:0000259|Pfam:PF13837})
HSP 1 Score: 470.7 bits (1210), Expect = 4.998e-162
Identity = 252/441 (57.14%), Postives = 323/441 (73.24%), Query Frame = 0
Query: 14 PSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGGNDDD-RSIRFMDGKGLNPKSFSMSFGRG-NVACVNAVNHHSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVS-EAEAEED--------------SEDDDGDSDSENDNPADQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIH-NPNRQQVKNQIDLGRH 435
P+ G +DLESP+ + Q QLG SS HQ M+++GG +D+ I M+ KG K SM FG+G VA +N + +++SEEDEP++ EDG+GEN G KGKKGSPWQRMKWTD +V+LLI VVACVGDDG + G +G KR SG+LQKKGKWKTVSKIMISKGC+VSPQQCEDKFNDLNKRYKRLNDILGRG SCRVVE P+LMDSMP LS+K K+DV+KILSSKHLFY+EMCAYHNGQ I +C ++DLQ +SLP +CSK+NN S E EAEE+ ++D+DG+ +E + + E F + +D F+ E+ARFF+DPTKS WE+ W KK+M++L+ QRV++QAE+ EL+K+RF+W R+C KK+ ELE +LENERM LENER +QL+ K +E+D S+ +R Q ++QIDLGRH
Sbjct: 14 PNGGILDLESPMHRHQTRQLGHSSLAHQ--HHMSVMGGVEDEPHPISLMEVKGSASKGVSM-FGKGKGVAPINGNHGYNLSEEDEPSYMEDGSGENFDGVKGKKGSPWQRMKWTDNVVKLLIAVVACVGDDGMVAGGEGLKRKSGILQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPHLSAKAKDDVRKILSSKHLFYKEMCAYHNGQRILDCHDIDLQGYSLPLERCSKDNNGSDEEEAEENHDSEDDDLDNEDDNNDDNDGERMTEFGDRKKVNEEDFHFWTSPQDSFEGEMARFFQDPTKSLWERREWVKKQMMQLEVQRVNVQAEALELEKQRFRWLRYCSKKDRELERLRLENERMKLENERKVLQLRQKELELDLRRSEASLEHSSLGIDRLQGRDQIDLGRH 451
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G369 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120721.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 5.555e-162
Identity = 256/459 (55.77%), Postives = 316/459 (68.85%), Query Frame = 0
Match: A0A834G369 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120721.1}))
HSP 1 Score: 470.7 bits (1210), Expect = 5.555e-162
Identity = 256/459 (55.77%), Postives = 316/459 (68.85%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQ-SSTQHQMPSTMNMLGGNDDDRSIRFMDGKGLNPKSFSMSFG-RGNVACVNAVNH-----HSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENN----------------VSEAEAEEDSEDDDGDSDSENDNPADQDFETFGRANAHEDGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMDSGNQGPSVNQIHNPNRQQVKNQIDLGRH 435
M+N+ +G+ FL GPS G +DLESP+ + Q+ LG S+T H + + G ++D IR M+ KG K F + FG R VA V+ N+ EEDEP + EDGNGE SGAKGKKGSPWQRMKWTD IVRLLI VVA VGDDG+LDG +G KR SG+LQKKGKWK VSKIMI+KGCYVSPQQCEDKFNDLNKRYK+LNDILGRG+SCRVVE P+ MDSM LS+KMKEDV+KIL+SKHLFYQEMCAYHNG+ IPNC ++DLQ HSLP +CSK+ N E D ++D E P ++D +FG + GF+AEVA F+D TKS WE+ W KKM++LQ+QRV I+ +FEL+K+ FKW RFC KK ELE S+LENERM+L NERM M+LK K E++ S++ + +R Q ++QIDLGRH
Sbjct: 1 MNNSGLGASFLSGPSCGLLDLESPIARHDQTPLGHVSNTYHHRRQMKSSMTGIENDLPIRLMETKGSTQKGF-LDFGKRKAVASVDVGNNDGNCSSEEGEEDEPGYAEDGNGEYCSGAKGKKGSPWQRMKWTDDIVRLLIAVVARVGDDGTLDGVEGPKRKSGVLQKKGKWKMVSKIMIAKGCYVSPQQCEDKFNDLNKRYKKLNDILGRGISCRVVEDPTRMDSMLNLSTKMKEDVRKILNSKHLFYQEMCAYHNGKRIPNCGDVDLQVHSLPLGRCSKDTNGEEEEAEENDESDDDEDESENEENDDVNEDRVRVGEQKKPNEKD-SSFGPHPSALSGFEAEVAEIFQDSTKSLWERRQWIGKKMVQLQEQRVCIEVAAFELEKQCFKWRRFCSKKERELERSRLENERMMLVNERMGMELKQKEWEINLKRSEASLDP-SSIDRLQRRDQIDLGRH 456
BLAST of XM_017402361.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RIA5 ((Transcription factor, putative {ECO:0000313|EMBL:EEF48877.1}))
HSP 1 Score: 468.774 bits (1205), Expect = 2.902e-161
Identity = 260/459 (56.64%), Postives = 332/459 (72.33%), Query Frame = 0
Match: B9RIA5 ((Transcription factor, putative {ECO:0000313|EMBL:EEF48877.1}))
HSP 1 Score: 468.774 bits (1205), Expect = 2.902e-161
Identity = 260/459 (56.64%), Postives = 332/459 (72.33%), Query Frame = 0
Query: 1 MDNTSVGSGFLLGPSVGFIDLESPVQQRQQSQLGQSSTQHQMPSTMNMLGG-NDDDRSIRFMDGKGLNPKSFSMSFGRG-NVACVNAVNHHSVSEEDEPNF-EDGNGENSSGAKGKKGSPWQRMKWTDMIVRLLIQVVACVGDDGSLDGFKGTKRSSGMLQKKGKWKTVSKIMISKGCYVSPQQCEDKFNDLNKRYKRLNDILGRGMSCRVVETPSLMDSMPQLSSKMKEDVKKILSSKHLFYQEMCAYHNGQPIPNCAELDLQTHSLPNVQCSKENNVS-EAEAEEDSEDDDGDSDSENDNPADQDFETFG---------RANAHE-------DGFQAEVARFFEDPTKSKWEQTVWAKKKMLELQDQRVSIQAESFELQKRRFKWERFCEKKNTELEISKLENERMLLENERMAMQLKHKVVEMD----SGNQGPSVNQIHNPNRQQVKNQIDLGRH 435
MD + +G FL P G +DLESP+ ++QQ+Q G SS HQ MN++ G +D + I M+ KG +P+++S + +G V+ + N +VSE+DEP+F EDGNG+NSSGAK KKGSPWQRMKWTD +VRLLI VVACVGDDG+ DG +G KR SG+LQKKGKWKTVSKI+ISKGC+VSPQQ EDKFNDLNKRYKRLNDILGRG SCRVVE P+LMDSMP LS+K KEDV+KILSSKHLFY+EMCAYHNGQ IPNC +LDLQ SLP +CS++NN S E EAE + D+ +SD+E+DN A ++ E G +AH + F+ E+A F+DP+ S WE+ W K+ L+L +QRVSIQA++FEL+K+RFKW R+C KK+ E E +LENERM LENE+ +QL+ K +EMD ++ P+ I +R Q ++QIDLGRH
Sbjct: 1 MDASGLGGQFLSSPVGGLLDLESPIHRQQQAQSGHSSLAHQ--RHMNLISGLGNDHQPIGLMEVKGSSPRNYSTNLSKGKGVSHFSPTNDGNVSEDDEPSFTEDGNGDNSSGAKSKKGSPWQRMKWTDNVVRLLIAVVACVGDDGAFDGVEGLKRKSGILQKKGKWKTVSKILISKGCHVSPQQSEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMP-LSAKAKEDVRKILSSKHLFYKEMCAYHNGQMIPNCQDLDLQGFSLPLERCSRDNNGSEEEEAEGHDDSDEDESDNEDDNNAIEEGERMGMYAERNKVNEEDAHLWPQSGGCNSFEVEMAGIFQDPSVSLWEKKEWINKQKLQLLEQRVSIQAQAFELEKQRFKWLRYCSKKDKEFEKLRLENERMRLENEQSVLQLRQKQLEMDLRSSESSRDPTSLGI---DRLQGRDQIDLGRH 453
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BSG9 | E-Value: 0.000e+0, PID: 62.69 | (Putative stress response protein nst1-like isofor... [more] |
| A0A5J5AFW9 | E-Value: 2.020e-176, PID: 61.14 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A2I4FH56 | E-Value: 2.340e-167, PID: 56.99 | (uncharacterized protein LOC108998738 {ECO:0000313... [more] |
| A0A4V3WPT5 | E-Value: 1.220e-166, PID: 57.63 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A7J7GBB2 | E-Value: 1.922e-166, PID: 58.82 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A251J809 | E-Value: 1.398e-165, PID: 55.99 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A6J0ZU49 | E-Value: 4.710e-162, PID: 58.08 | (uncharacterized protein LOC110412152 {ECO:0000313... [more] |
| W9S6Z6 | E-Value: 4.998e-162, PID: 57.14 | Myb_DNA-bind_4 domain-containing protein {ECO:0000... [more] |
| A0A834G369 | E-Value: 5.555e-162, PID: 55.77 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7120... [more] |
| B9RIA5 | E-Value: 2.902e-161, PID: 56.64 | (Transcription factor, putative {ECO:0000313|EMBL:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |