Resource Type:
Polypeptide
Name:
XM_017374903.1
Identifier:
XM_017374903.1-protein
Sequence:
MAAVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQL
TILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQ
TVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGY
VGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALG
EDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVL
LMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSS
DINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADF
WLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLG
AGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLG
ICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVY
DSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQML
YAGGSFRLPNGASS
Sequence Length:
564
Sequence Checksum:
56d867b3c6c0d452791f645e126252ee
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374903.1, derives from mRNA, XM_017374903.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C915 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0
Identity = 445/561 (79.32%), Postives = 498/561 (88.77%), Query Frame = 0
Match: A0A5B7C915 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0
Identity = 445/561 (79.32%), Postives = 498/561 (88.77%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
A++K G+RPPWVGLGAAVWVQIAAG+AYTFPLYS SLKSVLGFTQQQLTILGVANDIGENVGILPGIA NKFPPW V+ +GV A F GYGVIWLAVSQTV S+PYW+LW+AL +ATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGY+GLSAAVYTEV+SM+L SA LLL +T+GIPV CLAMMYF+R CTPA GEDSS HVHFLFTQ +SL+LA+YLLTTTILK+I +S +ISY + IMV+LLMSPLAIPIKMTLFPA+ KK SSSD++V +G SD T PLL+ SS L +E+EDVS+V+ILLAMGEGA+KKKRKPRRGEDFKF EA IKADFWLLW+VYFLGVGSGVTVLNNLA+IG++LGV+DTTILLSLFSFCNFLGRLGAG VSEHFVRS+ IPRT+WMTV Q +MII +LLYASAL GTLYAATALLGIC+GVQFGIMIPT SELFGLK FGIIFNFMQLGNP+GALLFSGL+AGY+YD E AKQ SSCLGP+CFRLTFL LAGVCGLG +LSI+LTIR+RPVYQMLYAGGSFRLP ++
Sbjct: 2 AILKAGSRPPWVGLGAAVWVQIAAGSAYTFPLYSTSLKSVLGFTQQQLTILGVANDIGENVGILPGIACNKFPPWAVLSIGVCACFLGYGVIWLAVSQTVQSLPYWLLWLALCVATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYIGLSAAVYTEVYSMVLNQSASKLLLTLTLGIPVLCLAMMYFIRPCTPASGEDSSVHVHFLFTQAASLSLAIYLLTTTILKNISSLSNAISYAFVAIMVILLMSPLAIPIKMTLFPANPKKPVPPVSSSDNLVAGEGNSDQTDPLLTPSSSATYLGSFHESEDVSDVEILLAMGEGAVKKKRKPRRGEDFKFHEAFIKADFWLLWLVYFLGVGSGVTVLNNLAQIGIALGVDDTTILLSLFSFCNFLGRLGAGAVSEHFVRSRTIPRTIWMTVAQTIMIIAFLLYASALSGTLYAATALLGICYGVQFGIMIPTASELFGLKHFGIIFNFMQLGNPLGALLFSGLIAGYIYDIEVAKQEGSSCLGPSCFRLTFLILAGVCGLGIMLSIILTIRLRPVYQMLYAGGSFRLPQSSN 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IKS4 ((Putative transporter mch1-like {ECO:0000313|EMBL:JAP32935.1}))
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 435/561 (77.54%), Postives = 495/561 (88.24%), Query Frame = 0
Match: A0A0V0IKS4 ((Putative transporter mch1-like {ECO:0000313|EMBL:JAP32935.1}))
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 435/561 (77.54%), Postives = 495/561 (88.24%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAG+AYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ VG+ +FFGYGV+WLAVSQTV S+PYWVLW+ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGY+GLSAAV+TE+ +M+L SA +LLLF+T+GIP+ CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LAVYLLTTTILK+I+ ++ SISY L+G+MV+LLMSPLAIP+KMT+FP+ KK GK SS+D+ E+ S T LL+ SS+ +L +E ED+SEVD+LLA+GEGA+KKKRKPRRGEDFKFREA+IKADFWLLW+ YF GVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM +TQ+LMII +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNP+GALLFSGL+AGYVYD+EA KQ S CLGP CFRLTFL LAGV G LS++LTIRIRPVYQMLYA GSFRL +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGSAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLVGLCLSFFGYGVLWLAVSQTVLSLPYWVLWLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYIGLSAAVFTEIFAMVLNDSASDLLLFLTLGIPIICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAVYLLTTTILKTILSLNNSISYILVGVMVILLMSPLAIPLKMTIFPSRHKKPGKLDDSSNDLTEEEISSSQTASLLTPISSEADLGSFHEGEDISEVDMLLAVGEGAVKKKRKPRRGEDFKFREAIIKADFWLLWLAYFFGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMITQILMIITFLLYASALSGTLYAATALLGICFGVQFGVMIPTSSELFGLKHFGIIFNFMQLGNPLGALLFSGLLAGYVYDTEAGKQQGSHCLGPNCFRLTFLVLAGVSAFGAFLSMILTIRIRPVYQMLYAAGSFRLAQASD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1B3Z3 ((Nodulin {ECO:0000313|EnsemblPlants:PGSC0003DMT400036644}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 433/561 (77.18%), Postives = 493/561 (87.88%), Query Frame = 0
Match: M1B3Z3 ((Nodulin {ECO:0000313|EnsemblPlants:PGSC0003DMT400036644}))
HSP 1 Score: 900.582 bits (2326), Expect = 0.000e+0
Identity = 433/561 (77.18%), Postives = 493/561 (87.88%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAG+AYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ VG+ +FFGYGV+WLAVSQTV S+PYWVLW+ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGY+GLSAAV+TE+ +M+L SA +LLLF+T+GIP+ CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LAVYLLTTTILK+I+ ++ SISY L+G+MV+LLMSPLAIP+KMT+FP+ K+ GK SS+D+ E+ S T LL+ SS+ +L E ED+SEVD+LLA+GEGA+KKKRKPRRGEDFKFREA+IKADFWLLW+ YF GVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM +TQ+LMII +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNP+GALLFSGL+AGYVYD+EA KQ S CLGP CFRLTFL LAG G LS++LTIRIRPVYQMLYA GSFRL +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGSAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLVGLCLSFFGYGVLWLAVSQTVLSLPYWVLWLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYIGLSAAVFTEIFAMVLNDSASDLLLFLTLGIPIICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAVYLLTTTILKTILSLNNSISYILVGVMVILLMSPLAIPLKMTIFPSRHKRPGKLDGSSNDLTEEEISSSQTASLLTPISSEADLGSFREGEDISEVDMLLAVGEGAVKKKRKPRRGEDFKFREAIIKADFWLLWLAYFFGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMITQILMIITFLLYASALSGTLYAATALLGICFGVQFGVMIPTSSELFGLKHFGIIFNFMQLGNPLGALLFSGLLAGYVYDTEAGKQQGSHCLGPNCFRLTFLVLAGASAFGAFLSMILTIRIRPVYQMLYAAGSFRLAQASD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7Y252 ((uncharacterized protein LOC104244484 {ECO:0000313|RefSeq:XP_009798217.1}))
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 434/561 (77.36%), Postives = 489/561 (87.17%), Query Frame = 0
Match: A0A1U7Y252 ((uncharacterized protein LOC104244484 {ECO:0000313|RefSeq:XP_009798217.1}))
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 434/561 (77.36%), Postives = 489/561 (87.17%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAGNAYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ VGV +FFGYGV+WLAVSQT+ S+PYWVLW+ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGYVGLS AV+TE+ +M+L SA LLLF+ +GIP+ CL MMYF+RACTPA GEDSSEHVHF+FTQ +SL LAVYLLTTTILKS + ++ SISY L G+MV+ LMSPLAIP+KMTLFP+ K+ GK SS+++ E+ S T LL+ SS+ +L +E EDVSEVD+LLA GEGA+KKKRKPRRGEDFKFREAV+KADFWLLWVVYFLGVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM VTQ++MI+I+LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNPIGALLFSGL+AGYVYD+EA KQ CLG CFRLTFL LAGVC G LS++LTIRIRPVYQMLYA GSFR+ +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGNAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLVGVCLSFFGYGVLWLAVSQTLLSLPYWVLWLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYVGLSGAVFTEIFAMVLNDSASELLLFLALGIPIICLVMMYFIRACTPASGEDSSEHVHFIFTQAASLLLAVYLLTTTILKSTLSLNSSISYILAGVMVIFLMSPLAIPVKMTLFPSLHKRSGKLDGSSNNLTEEEVSSSQTASLLTPISSEADLGSFHEGEDVSEVDMLLAEGEGAVKKKRKPRRGEDFKFREAVVKADFWLLWVVYFLGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMVTQIIMIVIFLLYASALSGTLYAATALLGICFGVQFGVMIPTASELFGLKHFGIIFNFMQLGNPIGALLFSGLLAGYVYDAEAGKQQGPHCLGANCFRLTFLVLAGVCAFGAFLSMILTIRIRPVYQMLYAAGSFRVAQDSD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4DP21 ((protein NUCLEAR FUSION DEFECTIVE 4-like {ECO:0000313|RefSeq:XP_016515168.1}))
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 434/561 (77.36%), Postives = 489/561 (87.17%), Query Frame = 0
Match: A0A1S4DP21 ((protein NUCLEAR FUSION DEFECTIVE 4-like {ECO:0000313|RefSeq:XP_016515168.1}))
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 434/561 (77.36%), Postives = 489/561 (87.17%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAGNAYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ VGV +FFGYGV+WLAVSQT+ S+PYWVLW+ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGYVGLS AV+TE+ +M+L SA LLLF+ +GIP+ CL MMYF+RACTPA GEDSSEHVHF+FTQ +SL LAVYLLTTTILKS + ++ SISY L G+MV+ LMSPLAIP+KMTLFP+ K+ GK SS+++ E+ S T LL+ SS+ +L +E EDVSEVD+LLA GEGA+KKKRKPRRGEDFKFREAV+KADFWLLWVVYFLGVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM VTQ++MI+I+LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNPIGALLFSGL+AGYVYD+EA KQ CLG CFRLTFL LAGVC G LS++LTIRIRPVYQMLYA GSFR+ +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGNAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLVGVCLSFFGYGVLWLAVSQTLLSLPYWVLWLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYVGLSGAVFTEIFAMVLNDSASELLLFLALGIPIICLVMMYFIRACTPASGEDSSEHVHFIFTQAASLLLAVYLLTTTILKSTLSLNSSISYILAGVMVIFLMSPLAIPVKMTLFPSLHKRSGKLDGSSNNLTEEEVSSSQTASLLTPISSEADLGSFHEGEDVSEVDMLLAEGEGAVKKKRKPRRGEDFKFREAVVKADFWLLWVVYFLGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMVTQIIMIVIFLLYASALSGTLYAATALLGICFGVQFGVMIPTASELFGLKHFGIIFNFMQLGNPIGALLFSGLLAGYVYDAEAGKQQGPHCLGANCFRLTFLVLAGVCAFGAFLSMILTIRIRPVYQMLYAAGSFRVAQDSD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BH97 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 436/562 (77.58%), Postives = 496/562 (88.26%), Query Frame = 0
Match: A0A5J5BH97 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0
Identity = 436/562 (77.58%), Postives = 496/562 (88.26%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRS-KAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
A++K G+RPPWVGLGAAVWVQIA G+ YTFPLYS SLKSV+GFTQQQLTILGVANDIGENVGILPGIA NKFPPW V+ VGV F GYGVIWLAVSQTV SMPYWVL++AL +ATNS+AWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEV+SM+L SA LLL +T+GIPV CLAMMYF+R CTPA GEDSS HVHFLFTQ +SL+LA+YLL TTILK I+ +S +ISYT + IMV+LLMSPLAIP+KMTLFPA+ KK+ SSSD++V +G S+ T P L+ SS L +E++DVS+VD+LLA+GEGA+KKKR PRRGEDFKFREA++KADFWLLW+VYFLGVGSGVTVLNNLA+IGV+LGV+DTTILLSLFSFCNFLGRLGAG VSEHFVRS + IPRT+WMTV Q++MII +LLYASAL GTLYAATALLG+C+GVQFGIMIPT SELFGL+ FGIIFNFMQLGNP+GALLFSGL+AGY+YD EAAKQ SSCLG CFRLTFL LAG+CGLGTILSI+LTIR+RPVYQMLYAGGSF LP ++
Sbjct: 2 AILKAGSRPPWVGLGAAVWVQIAGGSGYTFPLYSTSLKSVMGFTQQQLTILGVANDIGENVGILPGIACNKFPPWAVLLVGVCTCFLGYGVIWLAVSQTVQSMPYWVLFLALCVATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVYSMVLNESASKLLLTLTLGIPVLCLAMMYFIRPCTPASGEDSSVHVHFLFTQAASLSLAIYLLATTILKDILSLSNAISYTFVAIMVILLMSPLAIPVKMTLFPANLKKLSPPVSSSDNLVQGEGNSNQTDPFLTPSSSATYLGSFHESDDVSDVDMLLAVGEGAVKKKRGPRRGEDFKFREAIVKADFWLLWLVYFLGVGSGVTVLNNLAQIGVALGVDDTTILLSLFSFCNFLGRLGAGAVSEHFVRSTRTIPRTIWMTVAQIMMIISFLLYASALSGTLYAATALLGVCYGVQFGIMIPTASELFGLRHFGIIFNFMQLGNPLGALLFSGLLAGYIYDIEAAKQEGSSCLGANCFRLTFLILAGICGLGTILSIILTIRLRPVYQMLYAGGSFHLPQSSN 563
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2BC12 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 431/561 (76.83%), Postives = 492/561 (87.70%), Query Frame = 0
Match: A0A6N2BC12 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 431/561 (76.83%), Postives = 492/561 (87.70%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAG+AYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ +G+ +FFGYGV+WLAVSQTV S+PYWVLW+ALV+ATNSSAW GTAVLVTNMRNFP+SRGTVAGILKGY+GLSAAV+TE+ +M+L SA +LLLF+T+GIP+ CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LA+YLLTTTILK+I+ ++ SISY L+G+MV+LLMSPLAIP+KMT+FP+ K+ GK SS+D+ E+ T LL+ SSD +L E ED+SEVD+LLA+GEGA+KKKRKPRRGEDFKFREA+IKADFWLLW YF GVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM +TQ+LMII +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNP+GALLFSGL+AGYVYD+EA KQ S CLGP CFRLTFL LAGV G LS++LTIRIRPVYQMLYA GSFRL +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGSAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLIGLCLSFFGYGVLWLAVSQTVLSLPYWVLWLALVVATNSSAWMGTAVLVTNMRNFPVSRGTVAGILKGYIGLSAAVFTEIFAMVLNDSASDLLLFLTLGIPIICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAIYLLTTTILKTILSLNSSISYILVGVMVILLMSPLAIPLKMTIFPSRHKRPGKLDGSSNDLTEEEVSFSQTTSLLTPISSDADLGSFREGEDISEVDMLLAVGEGAVKKKRKPRRGEDFKFREAIIKADFWLLWFAYFFGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMITQILMIITFLLYASALSGTLYAATALLGICFGVQFGVMIPTSSELFGLKHFGIIFNFMQLGNPLGALLFSGLLAGYVYDTEAGKQQGSHCLGPNCFRLTFLVLAGVSAFGAFLSMILTIRIRPVYQMLYAAGSFRLAQASD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CZG6 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 430/561 (76.65%), Postives = 490/561 (87.34%), Query Frame = 0
Match: A0A2G3CZG6 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 430/561 (76.65%), Postives = 490/561 (87.34%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAGNAYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ +GV +FFGYGV+WLA+SQTV S+PYWVL++ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGYVGLS AV+TE+ +M+L SA +LLLF+T+G+P+ CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LAVYLLTTTILK+++ + SISY L+G+MVV LMSPLAIP+KMTLFP+ K+ GK SS+D+ E+ S T LL+ SS+++L +E EDVSEVD+LLA+GEGA+KKKRKPRRGEDFKFREAVIKADFWLLW+ YFLGVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM + Q++MII +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGII NFMQLGNPIGALLFSGL+AGYVYD EA KQ CLGP CFRLTFL LAGV G LS++LT+R+RPVYQMLYA GSFRL +
Sbjct: 34 AVLKEGSRPPWVGLAAAVWVQIAAGNAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLLGVCLSFFGYGVLWLAISQTVLSLPYWVLFLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYVGLSGAVFTEIFAMVLNNSASDLLLFLTLGVPIICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAVYLLTTTILKNMLSLKSSISYILVGVMVVFLMSPLAIPLKMTLFPSRLKRSGKLDGSSNDLTEEEVSSSQTAALLTPMSSEVDLGSFHEGEDVSEVDMLLAVGEGAVKKKRKPRRGEDFKFREAVIKADFWLLWLAYFLGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMLAQIIMIITFLLYASALSGTLYAATALLGICFGVQFGVMIPTASELFGLKHFGIIINFMQLGNPIGALLFSGLLAGYVYDMEAGKQQGLHCLGPNCFRLTFLVLAGVSAFGAFLSMILTVRVRPVYQMLYAAGSFRLAQASD 594
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8G2M2 ((protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 {ECO:0000313|RefSeq:XP_016562937.1, ECO:0000313|RefSeq:XP_016562938.1}))
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 431/561 (76.83%), Postives = 490/561 (87.34%), Query Frame = 0
Match: A0A1U8G2M2 ((protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 {ECO:0000313|RefSeq:XP_016562937.1, ECO:0000313|RefSeq:XP_016562938.1}))
HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 431/561 (76.83%), Postives = 490/561 (87.34%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAGNAYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ +GV +FFGYGV+WLA+SQTV S+PYWVL++ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGYVGLS AV+TE+ +M+L SA +LLLF+T+G+P CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LAVYLLTTTILK+++ + SISY L+G+MVV LMSPLAIP+KMTLFP+ K+ GK SS+D+ E+ S T LL+ SS+++L +E EDVSEVD+LLA+GEGA+KKKRKPRRGEDFKFREAVIKADFWLLW+ YFLGVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM + Q++MII +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNPIGALLFSGL+AGYVYD EA KQ CLGP CFRLTFL LAGV G LS++LT+R+RPVYQMLYA GSFRL +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGNAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLLGVCLSFFGYGVLWLAISQTVLSLPYWVLFLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYVGLSGAVFTEIFAMVLNNSASDLLLFLTLGVPTICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAVYLLTTTILKNMLSLRSSISYILVGVMVVFLMSPLAIPLKMTLFPSRLKRSGKLDGSSNDLTEEEVSSSQTAALLTPMSSEVDLGSFHEGEDVSEVDMLLAVGEGAVKKKRKPRRGEDFKFREAVIKADFWLLWLAYFLGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMLAQIIMIITFLLYASALSGTLYAATALLGICFGVQFGVMIPTASELFGLKHFGIIFNFMQLGNPIGALLFSGLLAGYVYDMEAGKQQGLHCLGPNCFRLTFLVLAGVSAFGAFLSMILTVRVRPVYQMLYAAGSFRLAQASD 562
BLAST of XM_017374903.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3A2R1 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 893.649 bits (2308), Expect = 0.000e+0
Identity = 430/561 (76.65%), Postives = 490/561 (87.34%), Query Frame = 0
Match: A0A2G3A2R1 (Nodulin-like domain-containing protein {ECO:0000259|Pfam:PF06813})
HSP 1 Score: 893.649 bits (2308), Expect = 0.000e+0
Identity = 430/561 (76.65%), Postives = 490/561 (87.34%), Query Frame = 0
Query: 3 AVVKGGTRPPWVGLGAAVWVQIAAGNAYTFPLYSHSLKSVLGFTQQQLTILGVANDIGENVGILPGIASNKFPPWVVMFVGVFAAFFGYGVIWLAVSQTVPSMPYWVLWVALVIATNSSAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTEVHSMLLGGSAENLLLFMTIGIPVTCLAMMYFVRACTPALGEDSSEHVHFLFTQVSSLALAVYLLTTTILKSIVPISRSISYTLIGIMVVLLMSPLAIPIKMTLFPASSKKIGKQASSSDDIVTEDGESDLTGPLLSSFSSDINLLGLYENEDVSEVDILLAMGEGAIKKKRKPRRGEDFKFREAVIKADFWLLWVVYFLGVGSGVTVLNNLAEIGVSLGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKAIPRTLWMTVTQVLMIIIYLLYASALHGTLYAATALLGICFGVQFGIMIPTVSELFGLKDFGIIFNFMQLGNPIGALLFSGLVAGYVYDSEAAKQLSSSCLGPTCFRLTFLFLAGVCGLGTILSIVLTIRIRPVYQMLYAGGSFRLPNGAS 563
AV+K G+RPPWVGL AAVWVQIAAGNAYTFPLYS +LKSVLGF+QQQLTI+GVANDIGENVGILPGIA NKFPPWV++ +GV +FFGYGV+WLA+SQTV S+PYWVL++ALV+ATNSSAW GTAVLVTNMRNFPLSRGTVAGILKGYVGLS AV+TE+ +M+L SA +LLLF+T+G+P CLAMMYF+RACTPA GEDSSEHVHFLFTQ +SL LAVYLLTTTILK+++ + SISY L+G+MVV LMSPLAIP+KMTLFP+ K+ GK SS+D+ E+ S T LL+ SS+++L +E EDVSEVD+LLA+GEGA+KKKRKPRRGEDFKFREAVIKADFWLLW+ YFLGVGSGVTVLNNLA+IGV+LGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSK IPRT WM + Q++MI+ +LLYASAL GTLYAATALLGICFGVQFG+MIPT SELFGLK FGIIFNFMQLGNPIGALLFSGL+AGYVYD EA KQ CLGP CFRLTFL LAGV G LS++LT+R+RPVYQMLYA GSFRL +
Sbjct: 2 AVLKEGSRPPWVGLAAAVWVQIAAGNAYTFPLYSPALKSVLGFSQQQLTIIGVANDIGENVGILPGIACNKFPPWVILLLGVCLSFFGYGVLWLAISQTVLSLPYWVLFLALVVATNSSAWMGTAVLVTNMRNFPLSRGTVAGILKGYVGLSGAVFTEIFAMVLNNSASDLLLFLTLGVPTICLAMMYFIRACTPASGEDSSEHVHFLFTQAASLLLAVYLLTTTILKNMLSLRSSISYILVGVMVVFLMSPLAIPLKMTLFPSRLKRSGKLDGSSNDLTEEEVSSSQTAALLTPMSSEVDLGSFHEGEDVSEVDMLLAVGEGAVKKKRKPRRGEDFKFREAVIKADFWLLWLAYFLGVGSGVTVLNNLAQIGVALGVNDTTILLSLFSFCNFLGRLGAGVVSEHFVRSKTIPRTFWMMLAQIIMIMTFLLYASALSGTLYAATALLGICFGVQFGVMIPTASELFGLKHFGIIFNFMQLGNPIGALLFSGLLAGYVYDMEAGKQQGLHCLGPNCFRLTFLVLAGVSAFGAFLSMILTVRVRPVYQMLYAAGSFRLAQASD 562
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7C915 | E-Value: 0.000e+0, PID: 79.32 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A0V0IKS4 | E-Value: 0.000e+0, PID: 77.54 | (Putative transporter mch1-like {ECO:0000313|EMBL:... [more] |
| M1B3Z3 | E-Value: 0.000e+0, PID: 77.18 | (Nodulin {ECO:0000313|EnsemblPlants:PGSC0003DMT400... [more] |
| A0A1U7Y252 | E-Value: 0.000e+0, PID: 77.36 | (uncharacterized protein LOC104244484 {ECO:0000313... [more] |
| A0A1S4DP21 | E-Value: 0.000e+0, PID: 77.36 | (protein NUCLEAR FUSION DEFECTIVE 4-like {ECO:0000... [more] |
| A0A5J5BH97 | E-Value: 0.000e+0, PID: 77.58 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A6N2BC12 | E-Value: 0.000e+0, PID: 76.83 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A2G3CZG6 | E-Value: 0.000e+0, PID: 76.65 | Nodulin-like domain-containing protein {ECO:000025... [more] |
| A0A1U8G2M2 | E-Value: 0.000e+0, PID: 76.83 | (protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 {EC... [more] |
| A0A2G3A2R1 | E-Value: 0.000e+0, PID: 76.65 | Nodulin-like domain-containing protein {ECO:000025... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |