XM_017400464.1

Resource Type: 
Polypeptide
Name: 
XM_017400464.1
Identifier: 
XM_017400464.1-protein
Sequence: 
MLRLNHTSRPWSSPIPTQIYPSRRESMSCPCWWKQTSAIHARKWEENSCM
VWDKANNNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAV
FNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWN
FARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLED
CFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFR
HNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTAT
ARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAA
ANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNT
CELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLY
NFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFI
APIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFEN
IVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLE
ILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKP
STKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQ
NLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKD
ILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKV
INPVSKLEPLSLELNDSLIVISELEGVQPLPLGSES
Sequence Length: 
836
Sequence Checksum: 
e7a3a9a6805e966c6af0ad5daa2a3191
View location in JBrowse: 
DCARv2_Chr1:28574108..28590690-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017400464.1, derives from mRNA, XM_017400464.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AY23 ((Putative ion channel POLLUX-like 2 {ECO:0000313|EMBL:MPA61025.1}))

HSP 1 Score: 1296.18 bits (3353), Expect = 0.000e+0
Identity = 650/855 (76.02%), Postives = 730/855 (85.38%), Query Frame = 0
 
Query:    1 MLRLNHTSRPWSSP-IP--TQIYPSRRESMSCPCWWKQTSAI--------HARKWEENSCMVWDKAN-----------NNKILKVDLK-SRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPLPL 832
            ML+L H+SRPW SP IP   QI  S+R+SM CPCWW Q+SA+        +  KWE ++    DK +           + K LK+DLK S   H     KLM++ +S Y L R+ Q  S+N V NM++D+LL+VIRTSA TS  F+C+S+SLNKPTPL+LD+ LPS++D+RW+FARLLYLFNI+LERNVATFLVVLLVACFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILLLSD+PRKQ+DKIA+NI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL G KY+ +RRGFQEAVVCG+YRRGK+ FHPNDDEVLEQ DKVLFIAP+ GK+KP +   +V+SE+ S IHNL  + KN ES + A  ++K+R ENIV+RP K GSKASDW+ GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA      GKLKN++V HRIGNPM+Y  LK TI NI K   KG DIP SIVVISDREWLLGDPSRADKHSAYSLLLAE+IC+KLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIA+EEVMSLVTAQVAENS+LNEVWKDILNA+GDEIYVKD+GLYMK GENPSFAELSERA+LRREVAIGYVKNN KVINP+ K EPLSLE+ DSLIVISELEG QP+ L
Sbjct:    1 MLQL-HSSRPWISPRIPRFNQISSSKRKSMPCPCWWIQSSALCVSNLFINNEGKWESSTQRTSDKLDSPWNLNVLDNFHAKYLKMDLKYSPWGH---PAKLMIASMSSYFLLRVMQLSSANTVMNMVQDLLLYVIRTSADTSLRFSCMSSSLNKPTPLQLDVSLPSLQDVRWSFARLLYLFNIQLERNVATFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLAFILKQLNKYHEFAVRLGTATARRQRILLLSDIPRKQMDKIADNIAKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMASVPTIVEVSNFNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGTKYRHLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEQTDKVLFIAPVHGKRKPQIGFSNVVSEENSTIHNLEVLEKNGESPNHALEIKKVRLENIVRRPTKPGSKASDWSQGPKECILMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRA------GKLKNIQVSHRIGNPMNYDILKGTIMNIQKSFKKGKDIPLSIVVISDREWLLGDPSRADKHSAYSLLLAENICDKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIASEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDIGLYMKNGENPSFAELSERAYLRREVAIGYVKNNKKVINPIPKSEPLSLEVTDSLIVISELEGEQPIFL 845
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C488 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1280 bits (3311), Expect = 0.000e+0
Identity = 632/839 (75.33%), Postives = 719/839 (85.70%), Query Frame = 0
 
Query:    6 HTSRPWSSP-IP--TQIYPSRRESMSCPCWWKQTSAIHAR--------KWEENSCMVWDKANNNKILKV-DLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPLPL 832
            H+SRPW +P IP   QI  S+R+SM CPCWW Q+SA+           +WE +S    ++      L V DL    Q  Q K  LM++ +S Y L R+ Q  S+N + NM++D+L +VIRT  ATS PFAC+S+SLNKPTPL LD+ LPS++D+RW+FAR+LYLFNI+LERNVATF VVLLVACFSFV+IGG LF+  RGSTQSLEDCFWEAWACL SSSTHL+QRTRVERVIGF+LAIWGILFYSR+LSTMTEQFR+NMQKLREGAQMQVLE+DHIIICGVNSHL FILKQL+KYHEFAVRLGTATARRQRILLLSDLPRKQ+DKIA+N+ KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPTKGDRY +DTDAFLSVLALQPLP M SVP IVEVSSS TCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIY+HLLNY+KNVFNL +F NL G+KY+Q+RRGFQEAVVCG+YRRGK+ FHPNDDEVLE+ DKVLFIAP+ GKKKP LA  +V+ +  S I NL  + KN ES + A  + K+R ENIVKRP K GSKASDW+ GPKE ILM+GWRPDV+EMI EYDNYLGPGSVLEILSDVP++DRN+A +LAG+GKLKNV+V HRIGNPM+Y  LKETIT+I K   KG D+P S+VVISDREWLL DPSR DKHSAYSLLLAE IC+KLGVKVQNLVAEIVDSKLGKQI+RIKPSLTYIAAEEVM LVTAQV EN++LNEVWKDILNA+GDEIYVKD+GLYMK+G+NPSFAEL+ERA+LRREVAIGYVKNN KVINP+ K EPLSLEL DSLIVISELEG QP+ L
Sbjct:    5 HSSRPWITPRIPRFNQI-SSKRKSMPCPCWWIQSSALRGSNFCLKNEGQWEASSQRASEEPEIPMHLNVLDLNYTPQDHQAK--LMITSMSSYFLLRVMQLNSANKLMNMVQDLLFYVIRTFVATSLPFACMSSSLNKPTPLHLDVSLPSLQDVRWSFARVLYLFNIQLERNVATFFVVLLVACFSFVIIGGFLFFKIRGSTQSLEDCFWEAWACLCSSSTHLKQRTRVERVIGFVLAIWGILFYSRVLSTMTEQFRNNMQKLREGAQMQVLESDHIIICGVNSHLNFILKQLDKYHEFAVRLGTATARRQRILLLSDLPRKQMDKIADNLAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTKGDRYEVDTDAFLSVLALQPLPKMASVPTIVEVSSSKTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYKHLLNYQKNVFNLCSFPNLAGIKYRQLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEETDKVLFIAPVHGKKKPQLAFSNVVKDQNSTIQNLEVLEKNGESPNHALEIRKVRLENIVKRPTKPGSKASDWSQGPKECILMLGWRPDVLEMIEEYDNYLGPGSVLEILSDVPMDDRNKANNLAGRGKLKNVRVLHRIGNPMNYDILKETITSILKAFKKGEDLPLSVVVISDREWLLRDPSRVDKHSAYSLLLAECICDKLGVKVQNLVAEIVDSKLGKQISRIKPSLTYIAAEEVMGLVTAQVVENNELNEVWKDILNAEGDEIYVKDIGLYMKKGDNPSFAELTERAYLRREVAIGYVKNNKKVINPIPKSEPLSLELTDSLIVISELEGEQPIIL 840
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ABR3 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1265.37 bits (3273), Expect = 0.000e+0
Identity = 622/793 (78.44%), Postives = 696/793 (87.77%), Query Frame = 0
 
Query:   50 MVWDKANN--NKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVK--------DVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPLPL 832
            M W+  +N   K L++DLK   Q    K  LMM+ +S Y L R+ Q  S+N V NM++D+L +VIRT  ATS PFACIS+SL KPTPL+LD+ LPS++D+RW+ ARLLYLFNI+LERNVA FLVVLLVACFSFV+IGG LF+ FRGSTQSLEDCFWEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQ R+NMQKLREGAQMQVLETDH+IICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQ+DKI ENI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQPLP M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL+G+ Y+Q+RRGFQEAVVCG+YRRGK+ FHP+DDEVLEQ DKVLFIAP+ GK+KP L   +V+SE+ S +HNL  + KN ES + A  + K+R E+IV+RP K GSKASDW+ GPKE +LM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA +LA QGKLKNV+V HRIGNPM+Y  LK TITNI K   KG DIPFSIVVISD+EWLLGDPSRADKHSAYSLLLAE+IC+KLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIA+EEVMSLVTAQVAENS+LNEVWKDILNA+GDEIYVK        D+GLYMK+GENP+FAELSERA+LRREVAIGYVKNN KVINP+ K EPLSLE+ DSLIVISELEG QP+ L
Sbjct:    1 MKWNVLDNCHAKYLRMDLKYSPQGHPAK--LMMASISSYFLPRVMQLSSANTVMNMVQDLLFYVIRTFVATSLPFACISSSLKKPTPLQLDVSLPSLQDVRWSVARLLYLFNIQLERNVAMFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCFWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQCRNNMQKLREGAQMQVLETDHVIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKIVENISKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPLPKMASVPTIVEVSNYNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLSGITYRQLRRGFQEAVVCGLYRRGKIYFHPHDDEVLEQTDKVLFIAPVHGKRKPQLTFSNVVSEENSTVHNLEVLEKNGESPNQALEISKVRLEHIVRRPAKPGSKASDWSQGPKECVLMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRASNLADQGKLKNVQVSHRIGNPMNYDILKGTITNIQKSFKKGKDIPFSIVVISDKEWLLGDPSRADKHSAYSLLLAENICDKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIASEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKIKLEKRFMDIGLYMKKGENPAFAELSERAYLRREVAIGYVKNNKKVINPIPKSEPLSLEVTDSLIVISELEGEQPILL 791
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B0R4 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241} (Fragment))

HSP 1 Score: 1256.12 bits (3249), Expect = 0.000e+0
Identity = 625/802 (77.93%), Postives = 696/802 (86.78%), Query Frame = 0
 
Query:   43 KWEENSCMVWDKAN-----------NNKILKVDLK-SRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPLPL 832
            KWE ++    DK +           + K LK+DLK S   H     KLM++ +S Y L R+ Q  S+N V NM++D+LL+VIRTSA TS  F+C+S+SLNKPTPL+LD+ LPS++D+RW+FARLLYLFNI+LERNVATFLVVLLVACFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILLLSD+PRKQ+DKIA+NI KDLNHID+LTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQPL  M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F NL G KY+ +RRGFQEAVVCG+YRRGK+ FHPNDDEVLEQ DKVLFIAP+ GK+KP L   +V+SE+ S IHNL  + KN ES + A  ++K+R ENIV+RP K GSKASDW+ GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLEILSDVP++DRNRA      GKLKN++V HRIGNPM+Y  LK TI NI K   KG DIP SIVVISDREWLLGDPSRADKHSAYSLLLAE+IC+KLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIA+EEVMSLVTAQVAENS+LNEVWKDILNA+GDEIYVKD+GLYMK GENPSFAELSERA+LRREVAIGYVKNN KVINP+ K EPLSLE+ DSLIVISELEG QP+ L
Sbjct:   45 KWESSTQRTSDKLDSPWNLNVLDNFHAKYLKMDLKYSPWGH---PAKLMIASMSSYFLLRVMQLSSANTVMNMVQDLLLYVIRTSADTSLRFSCMSSSLNKPTPLQLDVSLPSLQDVRWSFARLLYLFNIQLERNVATFLVVLLVACFSFVVIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVVGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLAFILKQLNKYHEFAVRLGTATARRQRILLLSDIPRKQMDKIADNIAKDLNHIDVLTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPLQKMASVPTIVEVSNFNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPNLAGTKYRHLRRGFQEAVVCGLYRRGKIYFHPNDDEVLEQTDKVLFIAPVHGKRKPRLGFSNVVSEENSTIHNLEVLEKNGESPNHALEIKKVRLENIVRRPTKPGSKASDWSQGPKECILMLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPMDDRNRA------GKLKNIQVSHRIGNPMNYDILKGTIMNIQKSFKKGKDIPLSIVVISDREWLLGDPSRADKHSAYSLLLAENICDKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIASEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDIGLYMKNGENPSFAELSERAYLRREVAIGYVKNNKKVINPIPKSEPLSLEVTDSLIVISELEGEQPIFL 837
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q3H0 ((Ion channel POLLUX-like {ECO:0000313|EMBL:PSS01409.1}))

HSP 1 Score: 1241.1 bits (3210), Expect = 0.000e+0
Identity = 620/854 (72.60%), Postives = 707/854 (82.79%), Query Frame = 0
 
Query:    1 MLRLNHTSRPWSSPIPTQIY-----PSRRESMSCPCWWKQTSA-----------------IHARKWEENSCMVWDKANNNKI--LKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            MLRL+ + RPW S +P   +     PS+R+SM   CWW ++SA                     ++E +S M +D  +N     L V +K+ ++ +  K  L+++ +SC  L RM      + +  + +D+L     +SA TSSPFACIS+SL KPTPL+LD+ LP + DIRW+FARLLYLFN++LERNVATF VVLL +CFSFV+IGG LF+ FRGSTQSLEDC WEAWACL SSSTHL+QRTRVERV+GF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATAR+QRILLLSDLPRKQ+DK+A+NI KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPTK DRY +DT+AFLSVLALQPLP M SVP IVEVS+ NTCELLK+ISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL NF NL  L Y ++RRGFQEAVVCG+YR GK+ FHPNDDEVL++ DKVLFIAP+ GKKKP LA P+V+ E+     NL  V KN +S + A  M K+R +NIVKRP KSGSKASDW++G KE +LM+GWRPD+V+MI EYDNYLGPGSVLEILSDVP++DRNRA +LAGQ KLKNV+V HRIGNPMDY  LKETITNI     K  DIP SIVV SDREWLLGDPSRADKHSAYSLLLAE+ICNKLGVKVQ+LVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENS+LNEVWKDILNA+GDEIYVKD+G YMKEGE PSFAELSERA+LRREVAIGY+K+N KVINP+ K EPLSLE  DSLIVISELEG QP+
Sbjct:    1 MLRLHASRRPWIS-LPVSRFNRILPPSKRQSMPFSCWWIKSSASCVSNLLTISEGKREASFQGTRYELDSPMSFDAPDNFDFEDLSVSIKNNMKGLHLK--LLIASVSCNLLLRMMPINVLSRLIKVPQDVLF----SSAVTSSPFACISSSLGKPTPLRLDVSLPPLEDIRWSFARLLYLFNMQLERNVATFFVVLLASCFSFVLIGGFLFFKFRGSTQSLEDCLWEAWACLCSSSTHLKQRTRVERVLGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARKQRILLLSDLPRKQMDKVADNIAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTKADRYEVDTNAFLSVLALQPLPHMASVPTIVEVSNLNTCELLKSISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCNFPNLAELTYCELRRGFQEAVVCGLYRGGKIYFHPNDDEVLQKTDKVLFIAPVHGKKKPQLAYPNVVGEENMIADNLGVVEKNADSPNPALEMIKMRLQNIVKRPSKSGSKASDWSLGSKECVLMLGWRPDIVQMIEEYDNYLGPGSVLEILSDVPLDDRNRASNLAGQSKLKNVRVSHRIGNPMDYDFLKETITNIQNSLIKDEDIPLSIVVTSDREWLLGDPSRADKHSAYSLLLAENICNKLGVKVQHLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDIGFYMKEGEKPSFAELSERAYLRREVAIGYMKDNKKVINPMPKSEPLSLEQTDSLIVISELEGEQPV 847
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7T781 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1219.91 bits (3155), Expect = 0.000e+0
Identity = 603/850 (70.94%), Postives = 704/850 (82.82%), Query Frame = 0
 
Query:    1 MLRLNHTSRPWSSPIPTQ---IYPSRRESMSCPCWWKQTSAIHARKW----------------EENSCMVWDKANNNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCS-LSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            MLRL  +S PW+SP  ++   I  S+R+S+ C CWW Q+SA+ A K+                +++    +   +N    K DLK+     QG D  +M   + Y L R+TQ  S+N +  M+++ LL V+ T    S PFAC+SNSLNKPTPL+LD+ LPS++DI+WNF+RL+YLFNIRLERNVAT  VVLLVACFSFV+IGGLL + FR +TQSLEDCFWEAWACLISSSTHL+QRT + RVIGF+LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQV+E DHI+ICG+NSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQ+DK+A+NI KDL+HID+LTKSCS LS+T SFERAAA+KARAIIILP  GDRY +DTDAFLSVLALQP+  M SVP IVEV++S T ELLK+ISGLKVEPVENVASKL VQCSRQKGLIKIY+HLLNYRKNVFNL++F NL G+KY+Q+RRGF+ AVVCG+YR GK+ FHPNDDEVL Q DKVLF+ P+PGK++P LA PDV  E+ + I NL  + KN  +  +A  + K+R ENIVKRP K GSKASDW++GPKE +L++GWR DVVEMI EYDNYLGPGSVLEILSDVP++DRNRA + AG GK+KN++V HR+GNPM+Y TL+ETI NI     KG  +P SIVVISDRE LLGDPSRADKHSAYSLLLAE+ICNKLGVKVQNLVAEIVDSKLGKQITRI+PSLTYIAAEEVM LVTAQVAENS+LNEVWKDILNA+GDEIYVKD+ LYMK GENPSF+EL+ERAHLR+EVAIGYVKNN KVINP+ K EPLSLE+ DSLIVISELEG QP+
Sbjct:    1 MLRL-QSSPPWTSPQVSRLNRISSSKRKSVPCDCWWIQSSALPANKFLMHNRGKCKASLQRTLDKSYSPTYLDGSNAGCFKEDLKN---GSQGYDAKLMIGSTSYFLLRLTQLYSANRLMKMVQN-LLSVVCTFGNGSLPFACMSNSLNKPTPLRLDVSLPSLQDIKWNFSRLIYLFNIRLERNVATSFVVLLVACFSFVVIGGLLLFKFRDNTQSLEDCFWEAWACLISSSTHLKQRTHIGRVIGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVMEADHIVICGINSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKLADNIAKDLSHIDVLTKSCSSLSLTKSFERAAADKARAIIILPANGDRYEVDTDAFLSVLALQPISKMTSVPTIVEVTNSQTAELLKSISGLKVEPVENVASKLLVQCSRQKGLIKIYKHLLNYRKNVFNLFSFPNLAGIKYRQLRRGFEGAVVCGLYRNGKIYFHPNDDEVLRQTDKVLFVGPVPGKREPQLAYPDV-KEETNTIQNLEVLEKNGGASHYALDLIKMRVENIVKRPTKPGSKASDWSLGPKERVLLIGWRQDVVEMIEEYDNYLGPGSVLEILSDVPLDDRNRASNFAGHGKVKNIQVSHRVGNPMNYDTLRETILNIRSSFKKGESVPLSIVVISDRECLLGDPSRADKHSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQITRIRPSLTYIAAEEVMGLVTAQVAENSELNEVWKDILNAEGDEIYVKDIRLYMKPGENPSFSELAERAHLRQEVAIGYVKNNKKVINPIPKSEPLSLEMTDSLIVISELEGAQPI 844
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IRY0 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1217.6 bits (3149), Expect = 0.000e+0
Identity = 597/825 (72.36%), Postives = 689/825 (83.52%), Query Frame = 0
 
Query:   23 RRESMSCPCWWKQTSAIHA--------RKWEENSCMVWDKAN---------NNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            R +S SC  WW +  ++HA        RKWE +S   W+K +         N+K  K+D     Q  Q K  L+++ LS Y L R TQ    N    +++ +L  VI+T  AT SPFAC+SNSLNKP PLKLD+ LPS++D+RW+FARL+YLFN++LERNVATFL+VLLVACFSFV+IGG LF+ FR STQSLEDC WEAWACL SSSTHL+QRTR+ERVIGFILAIWGILFYSRLLSTMTEQFR+NMQ+LR+GAQMQV+ETDHIIICGVNSHL FILKQLNKYHEFAVRLGTATARRQRILL+SDLPRKQ+DK+A+NI KDLNHID+LTKSCSLS+T SFERAAA+KARAIIILPT+ DRY +DTDAFLSVLALQP+P M SVP IVEVS S+TCELLK+ISGLKVEPVENVASKLFVQCSRQ+GL+KIYRHLLNY+KNVFNL +F NL G+ Y+Q+RRGFQEAVVCG+YR GK+ FHPNDDE+++Q DK+LFIAP+ GKK P++A P  + +  + I +L  V  N +S + A  + K R E IVKRP KSGSKASDWT GPKE IL++GWRPDVVEMI EY+NYLGPGSVLEILSDVP++DR RA +  GQGKLKNV+V H+IGNPMDY TLKETI NI      G D+P SIVVISDREWLLGDPSRADKHSAYSL+LAE+IC+KLGVKVQNLVAEIVDSKLGKQITR KPSLTYIAAEE+MSLVTAQVAENS+LNEVWKDILN++GDEIYVKD+ LYMKEGENPSFAEL+ERA+LRREVAIGYVK+  KVINP  K EPLSL+  D LIVISELEG QP+
Sbjct:   29 RGKSTSCHFWWFRQCSLHANRFNLHNARKWEASSQRTWNKMDICMPVSDNWNSKFFKLDQNDSSQGYQAK--LLITSLSSYLLLRFTQVNFVNTFKKIVQGLLPSVIQTFGATGSPFACMSNSLNKPVPLKLDVSLPSLQDVRWSFARLMYLFNMQLERNVATFLIVLLVACFSFVLIGGFLFFKFRDSTQSLEDCLWEAWACLCSSSTHLKQRTRIERVIGFILAIWGILFYSRLLSTMTEQFRNNMQRLRDGAQMQVMETDHIIICGVNSHLNFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQIDKLADNIAKDLNHIDVLTKSCSLSLTKSFERAAASKARAIIILPTQTDRYEVDTDAFLSVLALQPIPKMESVPTIVEVSKSSTCELLKSISGLKVEPVENVASKLFVQCSRQQGLVKIYRHLLNYQKNVFNLCSFPNLAGITYRQLRRGFQEAVVCGLYRNGKIYFHPNDDEIVQQPDKILFIAPVHGKKNPHIAYPTTV-KGTNNIQDLEIVKNNGDSPNHALELRKTRLEIIVKRPNKSGSKASDWTSGPKECILLLGWRPDVVEMIEEYNNYLGPGSVLEILSDVPLDDRKRASNAVGQGKLKNVRVSHKIGNPMDYETLKETIVNIQNSFNVGEDMPLSIVVISDREWLLGDPSRADKHSAYSLILAENICSKLGVKVQNLVAEIVDSKLGKQITRNKPSLTYIAAEEIMSLVTAQVAENSELNEVWKDILNSEGDEIYVKDISLYMKEGENPSFAELAERAYLRREVAIGYVKDKKKVINPNPKSEPLSLKSTDLLIVISELEGEQPI 850
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7IB55 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1207.97 bits (3124), Expect = 0.000e+0
Identity = 611/845 (72.31%), Postives = 689/845 (81.54%), Query Frame = 0
 
Query:    1 MLRLNHTSRPWSSP-IPTQIY---PSRRESMSCPCWWKQTSAIHAR--------KWEEN---SCMVWDKANNNKILKVDLKSRLQHVQGKDKLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            ML L H SRPW  P IPT  +   P RR+SM CPCWW ++              K + N   +C   D   N  +    LK+  Q V  K  L+++ LS Y L +M      N + N+ +D L   +     TS PFAC+S+SLNKPTPL+LD+ LPS++DI+W+FARLLYLFNI+LERNV+TF VVLL AC  FV+IGG LFY FRGS Q LEDCFW+AWACL SSSTHLRQRTRVERV+GF LAIWGILFYSRLLSTMTEQFR+NMQKLREGAQMQVLETDHIIICG+NS L FILKQLN+YHEFAVRLGTATAR+Q ILLLSDLPRKQ+DKIA+NIGKDLN+IDI+TKSCSLS+T SFERAAANKARAIIILPTK DRY +DTDAFLSVLALQPLP M  VP IVEVS SNTCELLK+ISGLKV+PVENV+SKLFVQCSRQK LIKIYRHLLNYRKNVFNL+NF NL GL Y+Q+RRGFQE+VVCG+YR GK+ FHP+DDEVL+Q DKVLFIAP+ GKKKP L   +V+ E+     N+  V KN ES   +  M+++R ENIVKRP KSGSKASDW +GPKE ILM+GWRPDVVEMI EYDNYLGPGSVLE LSDVP++D  RA +L  Q KLKNV+V HRIGNPMDY  LKETITNI K    G DIP SIVVISDREWLLGDPSRADKHSAY+LLLAE+ICN+LGVKV NLVAEIVDSKLGKQI+RI P+LTYIAAEEVMSLVTAQVAEN +LNEVW+DIL+A+GDEIYVK +GLYMKEGENPSFAELSERA+LRREVAIGYVKNN KVINP+ K  PLSLEL DSLIVISELEG QP+
Sbjct:    1 MLSL-HVSRPWILPRIPTLHHISRPPRRQSMPCPCWWMKSFVSRVSNLFISSEGKCDANFRRTCSELDSLTNFNVSD-KLKNSTQGVCAK--LLIASLSSYFLLKMVHVNIMNTLINVARDTLFSFV----GTSLPFACMSSSLNKPTPLRLDVSLPSLQDIKWSFARLLYLFNIQLERNVSTFFVVLLAACLFFVIIGGFLFYKFRGSEQRLEDCFWDAWACLCSSSTHLRQRTRVERVLGFSLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLETDHIIICGLNSRLAFILKQLNEYHEFAVRLGTATARKQIILLLSDLPRKQMDKIADNIGKDLNYIDIITKSCSLSLTKSFERAAANKARAIIILPTKEDRYEVDTDAFLSVLALQPLPKMAFVPTIVEVSDSNTCELLKSISGLKVQPVENVSSKLFVQCSRQKALIKIYRHLLNYRKNVFNLFNFPNLAGLTYRQVRRGFQESVVCGLYRGGKMYFHPSDDEVLQQFDKVLFIAPVHGKKKPRLEYQNVVKEENKTPINVEVVGKNSESPKQSLEMKRMRLENIVKRPTKSGSKASDWNLGPKECILMLGWRPDVVEMIAEYDNYLGPGSVLETLSDVPMDD--RASNLVHQRKLKNVRVSHRIGNPMDYNVLKETITNIQKNFKNGEDIPLSIVVISDREWLLGDPSRADKHSAYALLLAENICNRLGVKVHNLVAEIVDSKLGKQISRINPALTYIAAEEVMSLVTAQVAENGELNEVWRDILDAEGDEIYVKHIGLYMKEGENPSFAELSERAYLRREVAIGYVKNNKKVINPLPKSAPLSLELTDSLIVISELEGEQPI 835
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251QRP7 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1206.43 bits (3120), Expect = 0.000e+0
Identity = 595/834 (71.34%), Postives = 688/834 (82.49%), Query Frame = 0
 
Query:   14 PIPTQIYPSRRESMSCPCWWKQTSAIHARKW---EENSCMVWDKANNNKI-------LKVDLKSRLQHVQGKD-------KLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            P P +   S+R+SM C  WW ++S++HA  +       C V  +   NK+       +  D   +L      +       K+ M  +S Y   R+ +    N    ++++ L  V++   A + PFAC+SNSLNKP PL+LD+ LPS +DIRW+FARLLYLFNI+LE+NVATF +VLLVACFSFV+IGG LF+ FRGS +SLEDCFWEAWACL SSSTHL+QRTRVERVIGFILAIWGILFYSRLLSTMTEQFR+NM +LREGAQMQVLE+DHIIICGVNSHL+FILKQLNKYHEFAVRLGTATARRQRILL+SDLPRKQ+DK+A+N+ KDL HIDILTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P+M SVP IVEVSSSNTCELLK+ISGLKVEPVEN ASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F +L GLKY+++R GFQEAVVCG+YR GK+DFHP DDE+L++ DKVLF+AP+ G KKP +A  +V+ E  +   NL    KN  + S    + K R ENIV+RP K GSK SDWT+GPKE+IL++GWRPD++EMI EYDNYLGPGSV+EILSDVP++DRNRAR +AGQGKLKNVKV HRIGNPM++ TL+ETI NI K S K  DIP SIVVISDREWLLGDP+RADK SAYSLLLAE+ICNKL VKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAEN++LNEVWKDILNA+GDEIYVKD+ LY+KEGENPSF EL+ERA LR+EVAIGYVK+N KVINP  K EPLSLEL DSLIVISELEG QP+
Sbjct:   64 PTPNRFSSSKRKSMPCQFWWIKSSSLHASNFIVQNRGKCEVSSQRAGNKLGSTVYINIADDSNDKLPSTDQINISQVHLTKVTMGLVSLYLSIRLAKSNVFNTFIKIVQEKLPSVVQNFGAATLPFACVSNSLNKPMPLELDVSLPSFQDIRWSFARLLYLFNIQLEKNVATFFLVLLVACFSFVVIGGFLFFKFRGSNESLEDCFWEAWACLCSSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMYRLREGAQMQVLESDHIIICGVNSHLSFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNLAKDLIHIDILTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPNMESVPTIVEVSSSNTCELLKSISGLKVEPVENGASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPSLAGLKYRRVRHGFQEAVVCGLYRNGKIDFHPYDDEILQETDKVLFVAPVNGSKKPNVAYSNVVREIGNANENLEDQEKNGSTQSRDLQL-KTRLENIVRRPNKPGSKGSDWTLGPKEFILLLGWRPDIIEMIEEYDNYLGPGSVVEILSDVPLDDRNRARQVAGQGKLKNVKVSHRIGNPMNFDTLQETIMNIQK-SLKNKDIPLSIVVISDREWLLGDPTRADKQSAYSLLLAENICNKLHVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENNELNEVWKDILNAEGDEIYVKDISLYIKEGENPSFFELAERAQLRKEVAIGYVKDNKKVINPDPKSEPLSLELTDSLIVISELEGEQPI 895
[Close]
BLAST of XM_017400464.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XKQ7 (Castor_Poll_mid domain-containing protein {ECO:0000259|Pfam:PF06241})

HSP 1 Score: 1204.89 bits (3116), Expect = 0.000e+0
Identity = 595/834 (71.34%), Postives = 688/834 (82.49%), Query Frame = 0
 
Query:   14 PIPTQIYPSRRESMSCPCWWKQTSAIHARKW---EENSCMVWDKANNNKI-------LKVDLKSRLQHVQGKD-------KLMMSYLSCYSLGRMTQQISSNAVFNMLKDILLFVIRTSAATSSPFACISNSLNKPTPLKLDIILPSIRDIRWNFARLLYLFNIRLERNVATFLVVLLVACFSFVMIGGLLFYNFRGSTQSLEDCFWEAWACLISSSTHLRQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRHNMQKLREGAQMQVLETDHIIICGVNSHLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQVDKIAENIGKDLNHIDILTKSCSLSMTISFERAAANKARAIIILPTKGDRYGIDTDAFLSVLALQPLPDMGSVPAIVEVSSSNTCELLKTISGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLYNFTNLTGLKYKQIRRGFQEAVVCGIYRRGKVDFHPNDDEVLEQDDKVLFIAPIPGKKKPYLASPDVISEDVSGIHNLVQVNKNVESLSFAQHMEKLRFENIVKRPKKSGSKASDWTVGPKEWILMVGWRPDVVEMINEYDNYLGPGSVLEILSDVPIEDRNRARDLAGQGKLKNVKVFHRIGNPMDYTTLKETITNIHKPSTKGGDIPFSIVVISDREWLLGDPSRADKHSAYSLLLAESICNKLGVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENSDLNEVWKDILNADGDEIYVKDVGLYMKEGENPSFAELSERAHLRREVAIGYVKNNNKVINPVSKLEPLSLELNDSLIVISELEGVQPL 830
            P P +   S+R+SM C  WW ++S++HA  +       C V  +   NK+       +  D   +L      +       K+ M  +S Y   R+ +    N    ++++ L  V++   A + PFAC+SNSLNKP PL+LD+ LPS +DIRW+FARLLYLFNI+LE+NVATF +VLLVACFSFV+IGG LF+ FRGS +SLEDCFWEAWACL SSSTHL+QRTRVERVIGFILAIWGILFYSRLLSTMTEQFR+NM +LREGAQMQVLE+DHIIICGVNSHL+FILKQLNKYHEFAVRLGTATARRQRILL+SDLPRKQ+DK+A+N+ KDL HIDILTKSCSLS+T SFERAAANKARAIIILPTKGDRY +DTDAFLSVLALQP+P+M SVP IVEVSSSNTCELLK+ISGLKVEPVEN ASKLFVQCSRQKGLIKIYRHLLNYRKNVFNL +F +L GLKY+++R GFQEAVVCG+YR GK+DFHP DDE+L++ DKVLF+AP+ G KKP +A  +V+ E  +   NL    KN  + S    + K R ENIV+RP K GSK SDWT+GPKE+IL++GWRPD++EMI EYDNYLGPGSV+EILSDVP++DRNRAR +AGQGKLKNVKV HRIGNPM++ TL+ETI NI K S K  DIP SIVVISDREWLLGDP+RADK SAYSLLLAE+ICNKL VKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAEN++LNEVWKDILNA+GDEIYVKD+ LY+KEGENPSF EL+ERA LR+EVAIGYVK+N KVINP  K EPLSLEL DSLIVISELEG QP+
Sbjct:   20 PTPNRFSSSKRKSMPCQFWWIKSSSLHASNFIVQNRGKCEVSSQRAGNKLGSTVYINIADDSNDKLPSTDQINISQVHLTKVTMGLVSLYLSIRLAKSNVFNTFIKIVQEKLPSVVQNFGAATLPFACVSNSLNKPMPLELDVSLPSFQDIRWSFARLLYLFNIQLEKNVATFFLVLLVACFSFVVIGGFLFFKFRGSNESLEDCFWEAWACLCSSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMYRLREGAQMQVLESDHIIICGVNSHLSFILKQLNKYHEFAVRLGTATARRQRILLMSDLPRKQMDKLADNLAKDLIHIDILTKSCSLSLTKSFERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPNMESVPTIVEVSSSNTCELLKSISGLKVEPVENGASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSFPSLAGLKYRRVRHGFQEAVVCGLYRNGKIDFHPYDDEILQETDKVLFVAPVNGSKKPNVAYSNVVREIGNANENLEDQEKNGSTQSRDLQL-KTRLENIVRRPNKPGSKGSDWTLGPKEFILLLGWRPDIIEMIEEYDNYLGPGSVVEILSDVPLDDRNRARQVAGQGKLKNVKVSHRIGNPMNFDTLQETIMNIQK-SLKNKDIPLSIVVISDREWLLGDPTRADKQSAYSLLLAENICNKLHVKVQNLVAEIVDSKLGKQITRIKPSLTYIAAEEVMSLVTAQVAENNELNEVWKDILNAEGDEIYVKDISLYIKEGENPSFFELAERAQLRKEVAIGYVKDNKKVINPDPKSEPLSLELTDSLIVISELEGEQPI 851
Match NameStatsDescription
A0A5B7AY23E-Value: 0.000e+0, PID: 76.02(Putative ion channel POLLUX-like 2 {ECO:0000313|E... [more]
A0A5J5C488E-Value: 0.000e+0, PID: 75.33Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A5J5ABR3E-Value: 0.000e+0, PID: 78.44Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A5B7B0R4E-Value: 0.000e+0, PID: 77.93Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A2R6Q3H0E-Value: 0.000e+0, PID: 72.60(Ion channel POLLUX-like {ECO:0000313|EMBL:PSS0140... [more]
D7T781E-Value: 0.000e+0, PID: 70.94Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A5C7IRY0E-Value: 0.000e+0, PID: 72.36Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A7J7IB55E-Value: 0.000e+0, PID: 72.31Castor_Poll_mid domain-containing protein {ECO:000... [more]
A0A251QRP7E-Value: 0.000e+0, PID: 71.34Castor_Poll_mid domain-containing protein {ECO:000... [more]
M5XKQ7E-Value: 0.000e+0, PID: 71.34Castor_Poll_mid domain-containing protein {ECO:000... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.