Resource Type:
Polypeptide
Name:
XM_017375487.1
Identifier:
XM_017375487.1-protein
Sequence:
MLRSLIVEIDFNTLHEPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGE
NAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNT
LRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQIGKYTYNPSWKRN
ASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRP
KEGYIDESSSSKRLKEEYEDDSGAALPPWLEARQAISKTSSSRLAQKQRK
PRLTGESISLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLY
AVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKK
WWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHR
CKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHS
FQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSV
ETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLV
ICQTPSTYNPKCPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR
Sequence Length:
597
Sequence Checksum:
f3c1a05330556f552ce04c08772da414
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375487.1, derives from mRNA, XM_017375487.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YUI6 ((Putative DNA (Cytosine-5)-methyltransferase DRM2 isoform X2 {ECO:0000313|EMBL:MPA35562.1}))
HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 365/602 (60.63%), Postives = 452/602 (75.08%), Query Frame = 0
Match: A0A5B6YUI6 ((Putative DNA (Cytosine-5)-methyltransferase DRM2 isoform X2 {ECO:0000313|EMBL:MPA35562.1}))
HSP 1 Score: 716.072 bits (1847), Expect = 0.000e+0
Identity = 365/602 (60.63%), Postives = 452/602 (75.08%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQ-----IGKYTYNP-SWKRNASSSRSLYGMNGQGT------MRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRK-----PRLTGESIS-LPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHGN-ISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ GVKD KKASLLMM+FS +EV++A++KLG +API++++DFI AAQIA N EK+ N+GD+E+N D +TETLFGT++ TLRLLEMGFSE +IS AID GS+ + ELADSIV+ Q +GK Y P S+ N S + + G+GT +D +KTE+ SP S+F + E KGKRPKE Y DESS KR K+EY DDS + L P WLEAR+ SK +S R+ QR+ RL G ++ L KP SC+SLDRMVA PPYFFYGNV NLS DSWIKISQFLYA+EPEFVNTQFFSA SRKEGYVHNLP ENRFH++P+ PMTIEE IP TKKWWP WDTRKQ++CI+++ +GIS C+RL L D GLLS++QQ DLLH+C+ NLVW G+ KL PIEPEH+ERILGYP++HT+AA FS+ +RL +LKH FQ DTL YHLSVLK++FP GLT+L++YSG+GGAEITL RLGI LK VVSVE C IKRKILKQWW NSGQ G+LVQIED+Q+L+SSK + L ++FGGFD +ICQ P TY+ + G+ I+G DFS+FYEFVR+LQRV+S M +R
Sbjct: 162 EPDVL-GVKDEKKASLLMMSFSLEEVEFAMDKLGGDAPINELVDFIFAAQIAGNCEKDTDDPNHGDEERNED-NTETLFGTMDMTLRLLEMGFSEHEISTAIDKYGSEVPISELADSIVADQSAGSRVGKDKYFPTSFSMNRSKAGNSCRSFGRGTEDGLNHHSFDAFRVKTEEYSPDDVSQFKDINLAEKYKGKRPKEEYADESSCLKRPKKEYPDDSSSFLGPTWLEARKRDSKFTSYRMPVPQRELHHKAGRLDGFGMANLSKPNSCRSLDRMVAKPPYFFYGNVTNLSHDSWIKISQFLYAIEPEFVNTQFFSALSRKEGYVHNLPTENRFHILPKPPMTIEEAIPYTKKWWPSWDTRKQLTCISSETSGISPLCDRLGRTLIDSKGLLSVEQQRDLLHQCRTLNLVWAGNYKLAPIEPEHLERILGYPLHHTRAAEFSLMERLLSLKHCFQTDTLAYHLSVLKSLFPGGLTVLAIYSGIGGAEITLHRLGIHLKAVVSVEPCGIKRKILKQWWQNSGQTGELVQIEDVQRLASSKLDGLIKKFGGFDFIICQNPYTYSSNHSKMAADGDSIAGFDFSLFYEFVRVLQRVRSTMERNR 761
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YUN5 ((Putative DNA (Cytosine-5)-methyltransferase DRM2 isoform X2 {ECO:0000313|EMBL:MPA35561.1}))
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 352/602 (58.47%), Postives = 455/602 (75.58%), Query Frame = 0
Match: A0A5B6YUN5 ((Putative DNA (Cytosine-5)-methyltransferase DRM2 isoform X2 {ECO:0000313|EMBL:MPA35561.1}))
HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 352/602 (58.47%), Postives = 455/602 (75.58%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQI-----GKYTYNP-SWKRN----ASSSRSL-YGM-NGQGTMRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRK--PR---LTGESIS-LPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHGN-ISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ GV D KKASLLMM+FS +EV++A+++LG++API++++DFI AAQIA N EKN + +GD+EKN D +T TLFGT+ TLRLLEMGFS+ +IS AI+ GS+ + E+ADSIV+ QI GK Y+ S+ N + RS GM +G +D T+KT++ SP S+F + E KGKRPKE Y+DE SS KR KEEY DDS + P WL+AR+ SK ++ ++ +R+ P+ L G ++ L KP SC+SLDRMVA PPYFFYGNV+NLS DSW+KISQFLYA+EPEF NTQFFSA SRKEGYVHNLP ENRFH++P+ PMTIEE +P TKKWWP WDTRKQ+SCI+++ +GISQ C+RL +L D GLLS++QQ DLLH+C+ NL+W+G+ KL PIEPEH+ERILGYP++H++AA FS+ +RLQ+LKH FQ DTLGYHLSVLK++FP GLT+LS+Y+G+GGAEITL RLGI LK VVSVE C K+KILKQWW NSGQ G+LVQIEDIQ+L+ ++ E L ++FGGFD +ICQ P TY+ + G+ I+G DFS+FYEFVR+LQRV+S + +R
Sbjct: 162 EPDVLDGVNDDKKASLLMMSFSLEEVEFAMDELGKDAPINELVDFIFAAQIAGNCEKNTENLYHGDEEKNKD-NTGTLFGTMEKTLRLLEMGFSKHEISTAINKYGSEVPISEIADSIVADQITDSRVGKDKYSSTSFSMNHLKAGNGCRSFDRGMEDGLNHRSFDAFTVKTKEYSPDDFSQFKDINLAEKYKGKRPKEEYVDEPSSLKRPKEEYADDSSSFTGPTWLKARKGNSKFTTYQMPAPKRESHPKAGTLDGFGMAKLSKPKSCRSLDRMVAKPPYFFYGNVMNLSHDSWVKISQFLYAIEPEFANTQFFSALSRKEGYVHNLPTENRFHILPKPPMTIEEAVPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILIDSKGLLSVEQQRDLLHQCRTLNLIWIGNYKLAPIEPEHLERILGYPLHHSRAAEFSLTERLQSLKHCFQTDTLGYHLSVLKSLFPGGLTVLSIYTGIGGAEITLHRLGIHLKAVVSVEPCGTKQKILKQWWHNSGQTGELVQIEDIQRLARNQLESLIKKFGGFDFIICQNPYTYSSNHSKMAADGDSIAGFDFSLFYEFVRVLQRVRSTVERNR 762
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ADM0 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 359/614 (58.47%), Postives = 449/614 (73.13%), Query Frame = 0
Match: A0A5J5ADM0 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 359/614 (58.47%), Postives = 449/614 (73.13%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQ-----IGKYTYNP---SWKRNASSSRSL-YGM-NGQGTMRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYI--------------DESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQR-----KPRLTGESIS-LPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHG-NISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ GV D KKASLLMM+FS +EV++A++KLG +API++++DFI AAQIA +SEK++ N+G E+N D +TETLFGT++ TLRLLEMGFSE +IS AID G + + ELADSIV+ Q +GK Y + R +S RS GM +G +D L +KTE+ SP S+F + E +GKRPKE Y+ DESS KR K EY DDS + L P WLEAR+ SK + ++ QR RL G ++ L KP SC+SLDRMVA PPYFFYGNV+NLS D+WIKISQFLYA+EPE+VNTQFFSA SRKEGY+HNLP ENRFH++P+ PMTIEE IP TKKWWP WDTRKQ+SCI+++ +GISQ C+RL +L D G+LS++QQ DLLH+C+ NLVWVG++KL PIEPEH+E ILGYP++HTQ+ FS+ +RL +LKH FQ DTL YHLSVLK++ P GLT+LS+YSG+GGAEITL RLGI LK VVSVE C IKRKIL QWW NSGQ G+LVQIEDI +L+SSK + L ++FGGFD +ICQ P +Y+ K + G NI GLDFSMFYEFVR+LQRV+S M +R
Sbjct: 162 EPDVLDGVNDDKKASLLMMSFSLEEVEFAMDKLGGDAPINELVDFIFAAQIAGDSEKDIDDPNHGAAERNED-NTETLFGTMDKTLRLLEMGFSEHEISTAIDKYGLEVPISELADSIVADQSAGSHVGKVKYESFSMNRSRAGNSWRSFGRGMGDGLNHHYFDALRVKTEEYSPDDVSQFKDINLAEKYRGKRPKEEYVGGSSYLKRPKEEYVDESSCLKRPKVEYADDSSSFLGPTWLEARKRDSKFTGYQMPAPQRGLHHKAGRLDGFGMANLSKPNSCRSLDRMVAKPPYFFYGNVMNLSHDAWIKISQFLYAIEPEYVNTQFFSALSRKEGYIHNLPIENRFHILPKPPMTIEEAIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGRILIDSKGMLSVEQQRDLLHQCRTLNLVWVGNHKLAPIEPEHLECILGYPLHHTQSTDFSLTERLLSLKHCFQTDTLAYHLSVLKSLVPGGLTVLSIYSGIGGAEITLHRLGIHLKAVVSVEPCGIKRKILMQWWQNSGQTGELVQIEDIHRLASSKLDGLIKKFGGFDFIICQNPYSYSSKHSKMAADGDNIVGLDFSMFYEFVRVLQRVRSTMERNR 774
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GSU0 ((S-adenosyl-L-methionine-dependent methyltransferases superfamily protein {ECO:0000313|EMBL:GFZ13852.1}))
HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 341/602 (56.64%), Postives = 442/602 (73.42%), Query Frame = 0
Match: A0A7J0GSU0 ((S-adenosyl-L-methionine-dependent methyltransferases superfamily protein {ECO:0000313|EMBL:GFZ13852.1}))
HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 341/602 (56.64%), Postives = 442/602 (73.42%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSI----VSGQIGKYTYNP--SWKRNASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFS----SNGM---MESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRKPRLTG---ESISLPK---PVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ GV D ++ASLLMMNFS +E+++A++KLG +API++++DFI AAQIAEN E++ +N+G++++N + TE+LFGT++ TLRLLEMGFSE ISAAI+ GS+ +EELADSI V+G P S+ +N S++ Y +G DDL T D V EFS S+G +E KGKRP E YIDE SS KR K+EY++DS L P WLEAR+ SK++S R+ QR+ E +PK P SCKS+D+MVA PPYFFYGNV NLSQ+ W K+SQFLYA+EPEF NTQFFSA SRKEGY+HNLP+ NR H++P+ PMTIEE IP TKKWWP WD+RKQ+SCIN++++G+ Q C+RL LL+D GLLS++QQ DLLH+C+ NLVWVGH+KL P+EPEH+ERILGYP+ HT FS+ +RLQ+LKH FQ DTL YHLSVL+++FP GLT+LS+YSG+G AEI+L RLG+ LKGVVSVE CE KRK+LK+WW N+ Q G+LVQIE I KL+S+K E L ++FGGFDL+ICQ P ++ K P ++ G+I DFS FYEFVR+LQRV++ SR
Sbjct: 265 EPDVLYGVSDERRASLLMMNFSVNEINFAMDKLGVDAPINELVDFILAAQIAENQEQDRGDTNHGNEQRNEEVCTESLFGTMDKTLRLLEMGFSENQISAAIEKYGSEVRIEELADSICVDEVAGTRNDKNKRPWTSFSKNNSNTVINYRSWTRGIK--DDLRNHTSDPFTVKTEEFSLGDVSHGRDVDLEKYKGKRPNEEYIDELSSFKRPKQEYDEDSSRFLGPTWLEARKGDSKSTSFRMPVPQRELGSKAGQMEGFGMPKLDKPKSCKSVDQMVAKPPYFFYGNVTNLSQECWRKLSQFLYAMEPEFANTQFFSALSRKEGYIHNLPSGNRSHILPKPPMTIEEAIPQTKKWWPSWDSRKQLSCINSEISGLLQICDRLGKLLSDSRGLLSVEQQRDLLHQCRTLNLVWVGHHKLAPMEPEHLERILGYPLRHTSPFDFSLKERLQSLKHCFQTDTLAYHLSVLRSLFPGGLTVLSVYSGIGDAEISLHRLGMHLKGVVSVEPCETKRKVLKRWWENTIQTGELVQIESIMKLASNKLESLIKKFGGFDLIICQNPYNHSSKIPAMDTDGDI---DFSSFYEFVRVLQRVRNAKERSR 861
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PJF7 ((Inactive DNA (Cytosine-5)-methyltransferase DRM3 {ECO:0000313|EMBL:PSR92471.1}))
HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 341/602 (56.64%), Postives = 442/602 (73.42%), Query Frame = 0
Match: A0A2R6PJF7 ((Inactive DNA (Cytosine-5)-methyltransferase DRM3 {ECO:0000313|EMBL:PSR92471.1}))
HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 341/602 (56.64%), Postives = 442/602 (73.42%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSI----VSGQIGKYTYNP--SWKRNASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFS----SNGM---MESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRKPRLTG---ESISLPK---PVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ GV D ++ASLLMMNFS +E+++A++KLG +API++++DFI AAQIAEN E++ +N+G++++N + TE+LFGT++ TLRLLEMGFSE ISAAI+ GS+ +EELADSI V+G P S+ +N S++ Y +G DDL T D V EFS S+G +E KGKRP E YIDE SS KR K+EY++DS L P WLEAR+ SK++S R+ QR+ E +PK P SCKS+D+MVA PPYFFYGNV NLSQ+ W K+SQFLYA+EPEF NTQFFSA SRKEGY+HNLP+ NR H++P+ PMTIEE IP TKKWWP WD+RKQ+SCIN++++G+ Q C+RL LL+D GLLS++Q+ DLLH+C+ NLVWVGH+KL P+EPEH+ERILGYP+ HT FS+ +RLQ+LKH FQ DTL YHLSVL+++FP GLT+LS+YSG+G AEI+L RLGI LKGVVSVE CE KRK+LK+WW N+ Q G+LVQIE I KL+S+K E L ++FGGFDL+ICQ P ++ K P ++ G+I DFS FYEFVR+LQRV++ SR
Sbjct: 147 EPDVLYGVSDERRASLLMMNFSVNEINFAMDKLGVDAPINELVDFILAAQIAENQEQDRGDTNHGNEQRNEEVCTESLFGTMDKTLRLLEMGFSENQISAAIEKYGSEVRIEELADSICVDEVAGTGNDKNKRPRTSFSKNNSNTVINYRSWTRGIK--DDLRNHTSDPFTVKTEEFSLGDVSHGRDVDLEKYKGKRPNEEYIDELSSFKRPKQEYDEDSSRFLGPTWLEARKGDSKSTSFRMPVPQRELGSKAGQMEGFGMPKLDKPKSCKSVDQMVAKPPYFFYGNVTNLSQECWRKLSQFLYAMEPEFANTQFFSALSRKEGYIHNLPSGNRSHILPKPPMTIEEAIPQTKKWWPSWDSRKQLSCINSEISGLLQICDRLGKLLSDSRGLLSVEQKRDLLHQCRTLNLVWVGHHKLAPMEPEHLERILGYPLRHTSPFDFSLKERLQSLKHCFQTDTLAYHLSVLRSLFPGGLTVLSVYSGIGDAEISLHRLGIHLKGVVSVEPCETKRKVLKRWWENTIQTGELVQIESIMKLASNKLESLIKKFGGFDLIICQNPYNHSSKIPAMDTDGDI---DFSSFYEFVRVLQRVRNAKERSR 743
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HE21 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 337/582 (57.90%), Postives = 432/582 (74.23%), Query Frame = 0
Match: A0A7J7HE21 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 672.929 bits (1735), Expect = 0.000e+0
Identity = 337/582 (57.90%), Postives = 432/582 (74.23%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQIGKYTYNP------SWKRNASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRKPRLTG-ESISLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIE-DHGNISGLDFSMFYEFVRILQR 588
EPD+ D ++ASLLMMNFS DEV++A++KLGE+APIS+++DFI AAQIAEN + N+G+ E+N +++TE+LFGT++ TLRLLE+GFSE ISAAI+ G++ + ELAD+I + ++G S+ RN S + + +G +D T+KTE+ + S+FS + E KGKRPKE YIDE SS KR K+EY DD L P E R+ + R ++ + RL G E + KP SCKS+D+MVA PPYFFYGNV+NLS DSW+KISQFLYA EPE+V+TQFFSA SRKEGY+HNLP NRFH++P+ P TI+EVIP K+WWP WDTRKQ+SCI+T+ TGISQ C+RL ++ GLLS++QQ D+LH+CK NLVWVG NKL PIEPE+IE+ILGYP+NHT+ A S+ +RLQ LKH FQ DTLGYHLSVLK++FP GL++LS+YSG GGAEITL RLGI LKGVVSVE E+K+KILK+WW ++GQ+G+LVQIE+IQKL+SSK E L Q+FGGFDL+ICQ P Y K PT+ D G + GLDFS+FYEFVR+LQR
Sbjct: 163 EPDVFDVDNDDRRASLLMMNFSLDEVNFAMDKLGEDAPISELVDFIFAAQIAENQVHDN--PNHGNGERNKESTTESLFGTMDKTLRLLELGFSENQISAAIEKYGTEVPITELADAICADEVGDTCSAANKRLLTSFNRNRSWTSGME--DGPSNHSFDPFTVKTEEFCLDAGSQFSDIDL-EKYKGKRPKEEYIDELSSLKRPKQEYNDDLSNYLGPTCAEPRKGVQMPVHRREVHRKAR-RLDGFEMLESSKPKSCKSVDKMVAKPPYFFYGNVMNLSHDSWMKISQFLYATEPEYVDTQFFSALSRKEGYIHNLPPGNRFHILPKPPTTIQEVIPHAKRWWPSWDTRKQLSCISTETTGISQLCDRLGKIVATSKGLLSVEQQRDILHQCKTSNLVWVGRNKLAPIEPEYIEKILGYPINHTRVAELSLQERLQLLKHCFQTDTLGYHLSVLKSLFPGGLSVLSIYSGFGGAEITLQRLGICLKGVVSVEPSEMKQKILKKWWQSAGQMGELVQIENIQKLTSSKVESLVQKFGGFDLIICQNPYNYYSKKPTMAVDSGGLGGLDFSLFYEFVRVLQR 738
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PVT9 ((Inactive DNA (Cytosine-5)-methyltransferase DRM3 {ECO:0000313|EMBL:PSR97859.1}))
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 338/602 (56.15%), Postives = 444/602 (73.75%), Query Frame = 0
Match: A0A2R6PVT9 ((Inactive DNA (Cytosine-5)-methyltransferase DRM3 {ECO:0000313|EMBL:PSR97859.1}))
HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 338/602 (56.15%), Postives = 444/602 (73.75%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSI----VSGQIGKYTYNP--SWKRNASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFS----SNGM---MESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRK-----PRLTGESI-SLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR 597
EPD+ + V D ++ASLLMMNFS +E++ A++KLGE+A +++++DFI AAQIAEN E++ + +N+G++ +N + TE+LFGT++ TLRLLEMGFSE IS+AI+ GS+ +EELADSI V+G P S+ +N S++ Y G DDL T D PV +FS S+G +E KGKRPKE YIDE SS KR K+EY++DS + L WLEAR+ SK++S R+ QR+ ++ G + L KP SCKS+D+MVA PPYFFY N NLSQ+ W K+SQFLYA+EPEFVNTQFFSA SRKEGY+HNLP+ NR H++P+ PMTIEE IP TKKWWP WD+RKQ+SCIN++++G+ Q C+RL LL+D GLLS++QQ DLLH+C+ NLVWVGH+KL P+EPEH+ERILGYP+ HT FS+ +RLQ+LKH FQ DTLGYHLSVL+++FP GLT+LS++SG+G AEI+L RLGI LKGVVSVE CE KRK+LK+WW N+ Q G+LVQIE I KL+S+K E L ++FGGFDL+ICQ P ++ K P ++ G+I DFS FYEFVR+LQRV++ SR
Sbjct: 147 EPDVLNEVSDERRASLLMMNFSVNEINLAMDKLGEDAAVNELVDFILAAQIAENQEQDRRDTNHGNEPRNQEVCTESLFGTMDKTLRLLEMGFSENQISSAIEKYGSEVPIEELADSICVDEVAGTSNDKNKRPWTSFSKNKSNTVINYRSWTGGIK--DDLRNCTSDPFPVKTEKFSLGDVSHGRDIDLEKYKGKRPKEEYIDELSSFKRPKQEYDEDSSSFLGSTWLEARKGDSKSTSIRIPGPQREFGSKAGQMEGFGMPKLDKPKSCKSVDQMVAKPPYFFYANATNLSQECWRKLSQFLYAMEPEFVNTQFFSALSRKEGYIHNLPSGNRSHILPKPPMTIEEAIPQTKKWWPSWDSRKQLSCINSEISGLLQICDRLGKLLSDSRGLLSVEQQRDLLHQCRTLNLVWVGHHKLAPMEPEHLERILGYPLRHTSPFDFSLKERLQSLKHCFQTDTLGYHLSVLRSLFPRGLTVLSIFSGIGDAEISLHRLGIHLKGVVSVEPCETKRKVLKRWWENTIQTGELVQIESIMKLASNKLESLIKKFGGFDLIICQNPYNHSSKIPAMDTDGDI---DFSSFYEFVRVLQRVRNAKERSR 743
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HE15 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 329/602 (54.65%), Postives = 431/602 (71.59%), Query Frame = 0
Match: F6HE15 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 329/602 (54.65%), Postives = 431/602 (71.59%), Query Frame = 0
Query: 11 FNTLHEPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQIGKYTYNPS--WKRNASSSRSLYGMNGQGT------MRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAALPPWLEARQAISKTSSSRLAQKQRKPRLTGESI------SLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPK-CPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR 597
F+ EPD+SSGV D K+A+L+MM FS DEV++A++KLGE AP+++++DFI AAQIA +S+ + YG++E+ D + E LFGT++ TLRLLEMGFSE +IS+AI+ GS+ + ELADSI +GQI + + S ++ N S + + Y G+G +KTE+ SP + S+ + + + KGKRPK+ E +D S P WLE R+ K SS R+ +R + S+ KP+ CKSLD++VA PPYFFYGNV N+S DSW KISQFLYA+EPEFVNTQFFSA +RKEGY+HNLP+ENRFH++P+ PMTIEEVIP TKKWWP WDTRKQ+SCI+++ +GISQ C+RL +L D GLLS +QQ D+LH C+ NLVWVG KL PIEPEH+ERILGYP+NHT+ +S+ +RLQ+L+H FQIDTLGYHLSVLK+MFP+GLT+LSL+SG+GGAE+TL +LGI LKGVVSVE E KR ILK+WW N+GQ G+LVQI+DIQKL+SSK E L ++FGGFD VICQ P TY+ + + D +++G DFS+F EFVR+L RV+S M R
Sbjct: 124 FHPKEEPDVSSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSATFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQ-------------ESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVTNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIHNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPCTYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMERRR 712
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D8Y8 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 339/600 (56.50%), Postives = 434/600 (72.33%), Query Frame = 0
Match: A0A4S4D8Y8 (SAM-dependent MTase DRM-type domain-containing protein {ECO:0000259|PROSITE:PS51680})
HSP 1 Score: 665.611 bits (1716), Expect = 0.000e+0
Identity = 339/600 (56.50%), Postives = 434/600 (72.33%), Query Frame = 0
Query: 16 EPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDM-------------CGSKASVEELADSIVSGQIGKYTYNP------SWKRNASSSRSLYGMNGQGTMRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAAL-PPWLEARQAISKTSSSRLAQKQRKPRLTG-ESISLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPKCPTIE-DHGNISGLDFSMFYEFVRILQRVKSMM 593
EPD+ D ++ASLLMMNFS DEV++A++KLGE+APIS+++DFI AAQIAEN + N+G+ E+N +++TE+LFGT++ TLRLLE+GFSE ISAAI+ G++ + ELAD+I + ++G S+ RN S + + +G +D T+KTE+ + S+FS + E KGKRPKE YIDE SS KR K+EY DD L P E R+ + R ++ + RL G E KP SCKS+D+MVA PPYFFYGNV+NLS DSW+KISQFLYA EPE+V+TQFFSA SRKEGY+HNLP NRFH++P+ P TI+EVIP K+WWP WDTRKQ+SCI+T+ TGISQ C+ L ++ GLLS++QQ D+LH+CK NLVWVG NKL PIEPE+IE+ILGYP+NHT+ A S+ +RLQ LKH FQ DTLGYHLSVLK++FP GL++LS+YSG GGAEITL RLGI LKGVVSVE E+K+KILK+WW ++GQ+G+LVQIE+IQKL+SSK E L Q+FGGFDL+ICQ P Y+ K PT+ D G GLDFS+FYEFVR+LQRV+S M
Sbjct: 292 EPDVFDVDNDDRRASLLMMNFSLDEVNFAMDKLGEDAPISELVDFIFAAQIAENQVHDN--PNHGNGERNKESTTESLFGTMDKTLRLLELGFSENQISAAIEKYGGRDYISRNVYSVGTEVPITELADAICADEVGDTCSAANKRLLTSFNRNRSWTSGME--DGPSNHSFDPFTVKTEEFCLDAGSQFSDIDL-EKYKGKRPKEEYIDELSSLKRPKQEYNDDLSNYLGPTCAEPRKGVQIPVHRREVHRKAR-RLDGFEMRESSKPKSCKSVDKMVAKPPYFFYGNVMNLSHDSWMKISQFLYATEPEYVDTQFFSALSRKEGYIHNLPPGNRFHILPKPPTTIQEVIPHAKRWWPSWDTRKQLSCISTETTGISQLCDHLGKIVATSKGLLSVEQQRDILHQCKTSNLVWVGRNKLAPIEPEYIEKILGYPINHTRVAELSLQERLQLLKHCFQTDTLGYHLSVLKSLFPGGLSVLSIYSGFGGAEITLHRLGIYLKGVVSVEPSEMKQKILKKWWQSAGQMGELVQIENIQKLTSSKVESLVQKFGGFDLIICQNPYNYSSKKPTMAVDSGGHGGLDFSLFYEFVRVLQRVRSAM 885
BLAST of XM_017375487.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: G1CQN8 ((Domain rearranged methyltransferase {ECO:0000313|EMBL:AEK98591.1}) (Fragment))
HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 327/602 (54.32%), Postives = 428/602 (71.10%), Query Frame = 0
Match: G1CQN8 ((Domain rearranged methyltransferase {ECO:0000313|EMBL:AEK98591.1}) (Fragment))
HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0
Identity = 327/602 (54.32%), Postives = 428/602 (71.10%), Query Frame = 0
Query: 11 FNTLHEPDISSGVKDGKKASLLMMNFSEDEVDYAINKLGENAPISDIIDFIAAAQIAENSEKNVQISNYGDDEKNADASTETLFGTLNNTLRLLEMGFSEKDISAAIDMCGSKASVEELADSIVSGQIGKYTYNPS--WKRNASSSRSLYGMNGQGT------MRYDDLTIKTEDTSPVSHSEFSSNGMMESCKGKRPKEGYIDESSSSKRLKEEYEDDSGAALPPWLEARQAISKTSSSRLAQKQRKPRLTGESI------SLPKPVSCKSLDRMVAGPPYFFYGNVLNLSQDSWIKISQFLYAVEPEFVNTQFFSAFSRKEGYVHNLPNENRFHLIPRSPMTIEEVIPSTKKWWPPWDTRKQISCINTDLTGISQQCNRLESLLNDYGGLLSIDQQTDLLHRCKIYNLVWVGHNKLKPIEPEHIERILGYPVNHTQAAGFSMHDRLQALKHSFQIDTLGYHLSVLKTMFPEGLTLLSLYSGVGGAEITLDRLGIRLKGVVSVETCEIKRKILKQWWSNSGQVGDLVQIEDIQKLSSSKFEILKQRFGGFDLVICQTPSTYNPK-CPTIEDHGNISGLDFSMFYEFVRILQRVKSMMGNSR 597
F+ EPD+SSGV D K+A+L+MM FS DEV++A++KLGE AP+++++DFI AAQIA +S+ + YG++E+ D + E LFGT++ TLRLLEMGFSE +IS+AI+ GS+ + ELADSI +GQI + + S ++ N S + + Y G+G +KTE+ SP + S+ + + + KGKRPK+ E +D S P WLE R+ K SS R+ +R + S+ KP+ CKSLD++VA PPYFFYGNV N+S DSW KISQFLYA+EPEFVNTQFFSA +RKEG HNLP+ENRFH++P+ PMTIEEVIP TKKWWP WDT KQ+SCI+++ +GISQ C+RL +L D GLLS +QQ D+LH C+ NLVWVG KL PIEPEH+ERILGYP+NHT+ +S+ +RLQ+L+H FQIDTLGYHLSVLK+MFP+GLT+LSL+SG+GGAE+TL +LGI LKGVVSVE E KR ILK+WW N+GQ G+LVQI+DIQKL+SSK E L ++FGGFD VICQ P TY+ + + D +++G DFS+F EFVR+L RV+S M R
Sbjct: 124 FHPKEEPDVSSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIAGSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSSATFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHKGKRPKQ-------------ESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVSNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEG--HNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTIKQLSCISSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPCTYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMERRR 710
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YUI6 | E-Value: 0.000e+0, PID: 60.63 | (Putative DNA (Cytosine-5)-methyltransferase DRM2 ... [more] |
| A0A5B6YUN5 | E-Value: 0.000e+0, PID: 58.47 | (Putative DNA (Cytosine-5)-methyltransferase DRM2 ... [more] |
| A0A5J5ADM0 | E-Value: 0.000e+0, PID: 58.47 | SAM-dependent MTase DRM-type domain-containing pro... [more] |
| A0A7J0GSU0 | E-Value: 0.000e+0, PID: 56.64 | (S-adenosyl-L-methionine-dependent methyltransfera... [more] |
| A0A2R6PJF7 | E-Value: 0.000e+0, PID: 56.64 | (Inactive DNA (Cytosine-5)-methyltransferase DRM3 ... [more] |
| A0A7J7HE21 | E-Value: 0.000e+0, PID: 57.90 | SAM-dependent MTase DRM-type domain-containing pro... [more] |
| A0A2R6PVT9 | E-Value: 0.000e+0, PID: 56.15 | (Inactive DNA (Cytosine-5)-methyltransferase DRM3 ... [more] |
| F6HE15 | E-Value: 0.000e+0, PID: 54.65 | SAM-dependent MTase DRM-type domain-containing pro... [more] |
| A0A4S4D8Y8 | E-Value: 0.000e+0, PID: 56.50 | SAM-dependent MTase DRM-type domain-containing pro... [more] |
| G1CQN8 | E-Value: 0.000e+0, PID: 54.32 | (Domain rearranged methyltransferase {ECO:0000313|... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |