BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5J5BMS7 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 25 SSVAKAADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
SS IC STPYPS CRS LPNNN +ANVY+YGRSS SLS AR FLSL +LQ++S LT AI AL+DC++LA+LN+D +L S K + S A +L + + V TL+S+ILTN QTCLDGL A SWS+K+G+ IPL N T+LYSVSL+LF GWVPK + + L F GR P K + Q +E + RKLLQ D ++V++IVIVSQDGTG+F+TIN+A++ AP + ++GYF+IYVTAG+YEEYV I KN KY+MMIGDGINQTVITGN S DG+TTFNS+TFAVVG GFVAVNIT RNTAG HQAVA+R+GADLSTFYSCSFE YQDTLY HS RQ Y ECDIYGTVDFIFGNAAAV Q+CN+YPRLP++GQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ STQTYLGRPWK YSRTVYMQS+MD IN LGWHEW G FAL+T YYAE++NTGP S+T+GRVTW GY +N T+AA FTV+NF+ DDWLP TGVPY+ GL
Sbjct: 33 SSPVSPGTICRSTPYPSFCRSVLPNNN--SANVYEYGRSSVRKSLSSARKFLSLIDKYLQQSSTLTTSAIHALQDCQLLAQLNMDFLLSSFKTVNSTATTLPILKADDVQTLLSAILTNTQTCLDGLRDTAESWSVKNGLYIPLANDTRLYSVSLALFTKGWVPKNKKGTLKPHKKHL-PFRKGRLPLKMSSQNQAIYESVSRRKLLQ-ASDDLVLVTDIVIVSQDGTGNFTTINDAVAAAPTNSDGTSGYFLIYVTAGIYEEYVLIAKNKKYLMMIGDGINQTVITGNHSYVDGWTTFNSSTFAVVGQGFVAVNITIRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYAHSLRQLYRECDIYGTVDFIFGNAAAVFQNCNMYPRLPMTGQFNAITAQGRTDPNQNTGISIHNCTIRAADDLASSNSSTQTYLGRPWKEYSRTVYMQSYMDGSINPLGWHEWVGDFALNTSYYAEFNNTGPGSNTAGRVTWPGYH-IINATDAANFTVSNFLLADDWLPQTGVPYTGGL 561
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: F6HZ63 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 13 SILLIFLLPLLFSSVAKAAD-ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
S ++IFL LFSS + A D IC STP PS C+ L +N +ANVYDYGRSS S++ +R FLSL +L S+L+ A+ AL+DCR L LN+D +L SS+V + ++ LS E + V TL+S++LTN QTCLDGL++ + SWS+K+GVS PL N TKLY VSLSLF GWVPK V A + L F NGR P K + Q +E L RKLL D G D + +S+IV V+QDG+G+F+TIN+A+++APN T S GYFVIY+ AGVYEEYVSI KN KY+MMIGDGINQTVITGNRSV DG+TTFNSATFAVV GFVAVNITFRNTAG A HQAVA+RSGADLSTFY CSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLPLSGQFNAITAQGRTD NQNTG SI NC IRAADDLA+S+G+T+TYLGRPWK YSRTVYMQS M SLIN GW WSG FAL TLYYAEY+NTGP S+TS RVTW+GY + ++AA FTV NF+ G DWLP TGVPY+ GL
Sbjct: 73 SAIVIFLA--LFSSTSLADDSICQSTPDPSSCKGLVQSNK-SANVYDYGRSSLKKSIATSRKFLSLVDKYLSARSNLSAAAVRALQDCRFLGGLNLDYLLSSSQVADANSKILSVLEADDVQTLLSALLTNQQTCLDGLQETSSSWSVKNGVSTPLSNDTKLYRVSLSLFTKGWVPKQKKGKVVKARKHL-PFGNGRLPLKMSSQNRKLYESLSNRKLL-DTGNDQVSISDIVTVNQDGSGNFATINDAIAVAPNNTDGSNGYFVIYIQAGVYEEYVSIAKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIHNCVIRAADDLAASNGTTKTYLGRPWKEYSRTVYMQSNMGSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYH-VIGPSDAANFTVGNFLLGGDWLPQTGVPYTGGL 612
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A438F3N1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 13 SILLIFLLPLLFSSVAKAAD-ICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
S ++IFL LFSS + A D IC STP PS C+ L +N +ANVYDYGRSS S++ +R FLSL +L S+L+ A+ AL+DCR L LN+D +L SS+V + ++ LS E + V TL+S++LTN QTCLDGL++ + SWS+K+GVS PL N TKLY VSLSLF GWVPK V A + L F NGR P K + Q +E L RKLL D G D + +S+IV V+QDG+G+F+TIN+A+++APN T S GYFVIY+ AGVYEEYVSI KN KY+MMIGDGINQTVITGNRSV DG+TTFNSATFAVV GFVAVNITFRNTAG A HQAVA+RSGADLSTFY CSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLPLSGQFNAITAQGRTD NQNTG SI NC IRAADDLA+S+G+T+TYLGRPWK YSRTVYMQS M SLIN GW WSG FAL TLYYAEY+NTGP S+TS RVTW+GY + ++AA FTV NF+ G DWLP TGVPY+ GL
Sbjct: 73 SAIVIFLA--LFSSTSLADDSICQSTPDPSSCKGLVQSNK-SANVYDYGRSSLKKSIATSRKFLSLVDKYLSARSNLSAAAVRALQDCRFLGGLNLDYLLSSSQVADANSKILSVLEADDVQTLLSALLTNQQTCLDGLQETSSSWSVKNGVSTPLSNDTKLYRVSLSLFTKGWVPKQKKGKVVKARKHL-PFGNGRLPLKMSSQNRKLYESLSNRKLL-DTGNDQVSISDIVTVNQDGSGNFATINDAIAVAPNNTDGSNGYFVIYIQAGVYEEYVSIAKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIHNCVIRAADDLAASNGTTKTYLGRPWKEYSRTVYMQSNMGSLINPSGWSIWSGDFALSTLYYAEYNNTGPGSNTSNRVTWSGYH-VIGPSDAANFTVGNFLLGGDWLPQTGVPYTGGL 612
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A540LCM6 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5N5FUS0 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A5N5GZS1 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 1 MAFKPFLSSSFTSI--LLIFLLPLLFSSVAKAAD----------ICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAP-RTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
MA+ L SS + LI L+PL F+ ++ AAD IC STP PS C+S LP+N N NVY YGR S SLS++R FL L +LQR L+ A+ ALEDCR+LA LN+D +L S + +++ +++LST + + V TL+S+ILTN QTC DG++ SWSLK+G+S+PL N TK YSVSL+LF GWVPK V++ P R F NGR P K + + +E + RK+LQ + D ++VS IV VS DGTG+FSTIN+A++ APN + + GYF+IYVTAGVYEEYVS+ KN +++MM+GDGINQT+ITGNRSV DG+TTFNSATFAVV GFVAVNITFRNTAG HQAVA+RSGADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CNIYPRLP+SGQFNAITAQGRTD NQNTG SI NC IRAADDLASS+ ST+TYLGRPWK YSRTVYMQS++DSL+ +GW W G FAL TLYYAEY+NTGP S+T+ RVTW GY +N T+AA FTVTNF+ GDDWLP TGVPY+ L
Sbjct: 1 MAYNSKLISSLNLLASFLILLVPL-FAPLSSAADNSSTTVSAGTICKSTPDPSFCKSVLPHNRNP-ENVYYYGRFSVGKSLSQSRKFLKLIDKYLQRRPTLSLTAVRALEDCRLLAGLNMDFLLNSYETVNKTSKTLSTLKADDVQTLLSAILTNQQTCFDGIQSTVSSWSLKNGLSVPLKNDTKFYSVSLALFTKGWVPKKKKQ-VAWRPTRKQRGFKNGRLPLKMSSKMRAVYESVSKRKMLQTETADDEVLVSEIVTVSPDGTGNFSTINDAIAAAPNNSAPTDGYFLIYVTAGVYEEYVSVAKNKRHLMMVGDGINQTIITGNRSVVDGWTTFNSATFAVVAPGFVAVNITFRNTAGAIKHQAVAVRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLASSNSSTKTYLGRPWKEYSRTVYMQSYIDSLVEPVGWRAWDGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYH-VINSTDAANFTVTNFLLGDDWLPQTGVPYTGEL 568
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A2I4EZC3 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 25 SSVAKAADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQD-GGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
+S + +C STP P+ CRS LPN TANVY Y R S +LS++R FL L +L+RNS LT AI ALEDCR+LA LN+D +L S + + S + LS+ E + T +S+ILTN QTC DGL+ A +WS+K G+++PL N TKLYSVSL+LF GWVP+ R F NGR P K + + +E RKLLQ D ++VS+IV VSQDGTG+F+TIN+A++ APN ++ + GYF+IYVT GVYEEYVSI KN K++MMIGDGINQT+ITGNRSV DG+TTFNSATFAVV GFVAVNITFRNTAG HQAVA+R+GADLSTFYSCSFE YQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLP+SGQFNAITAQGRTD NQNTG SIQNC IRAAD+LASS+G+TQTYLGRPWK YSRTVY+Q+FMD LIN GW W+G FAL TLYYAEY+NTGP+S+T+ RVTW+GY +N TE A FTV NF+ GDDWLP TGVPY+ GL
Sbjct: 31 TSPVSSVTVCKSTPDPTYCRSVLPNQ--TTANVYYYSRYSVRKALSQSRKFLMLVDKYLRRNSTLTTSAIRALEDCRLLAGLNMDFLLSSFQTVNSTGRILSSQRAEDIQTFLSAILTNEQTCSDGLQATASAWSIKKGLAVPLANDTKLYSVSLALFTKGWVPRKKKSTAWQPKRKQVGFKNGRLPLKMSSRTRAIYESASRRKLLQSTDNDDEVMVSDIVTVSQDGTGNFTTINDAIAAAPNNSVPADGYFLIYVTEGVYEEYVSIAKNKKHLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVAPGFVAVNITFRNTAGAIKHQAVALRNGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGISIQNCRIRAADELASSNGTTQTYLGRPWKEYSRTVYVQTFMDRLINPAGWMAWNGEFALSTLYYAEYNNTGPRSNTTNRVTWSGYH-VMNATEVANFTVANFLLGDDWLPQTGVPYAGGL 562
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A7J0G1B8 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A2C9WPD9 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 30 AADICASTPYPSLCRS-LPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVI-SQAQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAPRTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQDGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
A +C S P PS C+S LPN +T+NVYDYGR S SLS+AR FL L +L R S L+ AI ALEDCR+LA LN+D ++ S + + S +++L++ + + V T +S+ILTN QTCLDGL+ A +WS+K G+ +PL N TKLYSVSL+LF GWVPK R AF NGR P K +G+ T FE + RKLLQ D I+VS IV V +GTGDFS+IN+A++ APN T S GYF+I++TAGVYEEYVSIPKN KY+MM+G GINQTVITGNRSV DG+TTFNSATFAVV FVAVNITF+NTAG HQAVA+RSGADLSTFYSCSFEGYQDTLYTHS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPR P+SGQFNAITAQGRTD NQNTG SI NC I+AADDLASS+ + QTYLGRPWK YSRTVYMQSFMDSLIN GW WSG FAL TLYYAEY+NTGP SDT+ RVTW GY N T+A FTV++F+ GDDWLPL GVPY+ GL
Sbjct: 43 AGSLCKSFPDPSYCKSILPN---STSNVYDYGRFSVRKSLSQARKFLDLVDKYLARRSSLSTSAIRALEDCRLLAGLNMDFLISSFQTVNSTSKTLNSVKADDVQTWLSAILTNQQTCLDGLQATASAWSVKKGLLLPLSNDTKLYSVSLALFTKGWVPKNKKGFTWQPTRKQLAFRNGRLPLKMSGKTRTVFESVSRRKLLQTAEEDAIMVSGIVTVDLNGTGDFSSINDAVAAAPNNTNGSNGYFMIFITAGVYEEYVSIPKNKKYLMMVGAGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFQNTAGAIKHQAVALRSGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRTPMSGQFNAITAQGRTDPNQNTGTSIHNCTIKAADDLASSNQTFQTYLGRPWKEYSRTVYMQSFMDSLINPAGWQIWSGDFALKTLYYAEYNNTGPGSDTTNRVTWDGYHIINNVTDAGNFTVSSFLLGDDWLPLIGVPYTGGL 568
BLAST of XM_017384193.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR Match: A0A6I9TBV3 (Pectinesterase {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589} (3.1.1.11 {ECO:0000256|ARBA:ARBA00013229, ECO:0000256|RuleBase:RU000589}))
Query: 3 FKPFLSSSFTSILLIFLLPLLFSSVAK---------AADICASTPYPSLCRSLPNNNNATANVYDYGRSSFTSSLSKARTFLSLTQNFLQRNSDLTPGAIAALEDCRVLAELNVDNILESSKVISQ-AQSLSTSEMESVHTLMSSILTNAQTCLDGLEQAAPSWSLKDGVSIPLVNATKLYSVSLSLFKTGWVPKTMSMPVSYAP--RTLGAFVNGRFPFKKAGQGSTNFEKLGGRKLLQ-DGGGDYIVVSNIVIVSQDGTGDFSTINEALSMAPNKTLASAGYFVIYVTAGVYEEYVSIPKNNKYVMMIGDGINQTVITGNRSVADGFTTFNSATFAVVGDGFVAVNITFRNTAGGANHQAVAMRSGADLSTFYSCSFEGYQDTLYTHSNRQFYTECDIYGTVDFIFGNAAAVLQDCNIYPRLPLSGQFNAITAQGRTDINQNTGYSIQNCNIRAADDLASSSGSTQTYLGRPWKLYSRTVYMQSFMDSLINSLGWHEWSGTFALDTLYYAEYSNTGPKSDTSGRVTWTGYRPSLNETEAAAFTVTNFISGDDWLPLTGVPYSSGL 556
K L S+F + ++FLL + FS + + +C STP+PS C ++ ++N++ANVYDYGR S SLS AR FLSL + +L+++ LT A+ ALEDC+ LAE N+D+++ S +++ Q +++LS E + V TL+S+ILTN QTC+DGL+ A +W +++G+ PL N T+LYSVSL+LF GWVPK S P S P R NG K + + + + R+LLQ D G + ++VS+IVIVSQDGTG+F+TIN+A++ APN T ++GYF+IY+TAGVYEEYVSI KN KY+MMIGDGINQT+ITGN SV DG+TTFNS++FAVVG GFVAVNITFRNTAG HQAVA+R+GADLSTFYSCSFE YQDTLY HS RQFY ECDIYGTVDFIFGNAA V Q+CN+YPRLP+S QFNAITAQGRTD NQNTG SIQNC IRAADDLA+S+ + +TYLGRPWK YSRTVYMQSFMDSLIN GW WSG FAL+T YYAE++N+GP S+TS RVTW G+ +NET+AA FTV+ F+ GDDW+P TG PY++GL
Sbjct: 5 LKNLLFSAFPLLCILFLLSISFSQTSADTPPATPVPPSKLCKSTPFPSFCNTVLPSSNSSANVYDYGRFSVRKSLSAARKFLSLIEKYLRKSKQLTITAVRALEDCKFLAESNIDHLMSSFQIVDQTSKTLSVLEADDVQTLLSAILTNTQTCIDGLQATASAWRVRNGILSPLSNDTRLYSVSLALFTKGWVPKKKSRPSSSIPAGRKQLKMRNGSLNLKMSARNQAIYSTVNKRRLLQADSGDNQVLVSDIVIVSQDGTGNFTTINDAVAAAPNNTDGTSGYFLIYITAGVYEEYVSIGKNKKYLMMIGDGINQTIITGNHSVVDGWTTFNSSSFAVVGTGFVAVNITFRNTAGAIKHQAVAVRNGADLSTFYSCSFEAYQDTLYVHSLRQFYVECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSNQFNAITAQGRTDPNQNTGISIQNCTIRAADDLANSNITIRTYLGRPWKEYSRTVYMQSFMDSLINPAGWTIWSGDFALNTSYYAEFNNSGPGSNTSQRVTWPGFH-IINETDAANFTVSAFLLGDDWIPQTGAPYTAGL 570
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.
There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.
LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.
Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.
RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.
The NCBI Sequence report lists the correspondences between the various naming methods
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.