Resource Type:
Polypeptide
Name:
XM_017373895.1
Identifier:
XM_017373895.1-protein
Sequence:
MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNA
ISFVAKKSELRILCGSHSKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGE
IECTISDLCLGTPSGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGV
PAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIM
HPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLR
TAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQ
AGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKK
AVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVS
MSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTN
AQKVSTAD
Sequence Length:
458
Sequence Checksum:
faab2027b53f7029fbe6dde33ec11fe7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017373895.1, derives from mRNA, XM_017373895.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833XK07 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5467160.1}))
HSP 1 Score: 455.677 bits (1171), Expect = 1.255e-155
Identity = 220/295 (74.58%), Postives = 250/295 (84.75%), Query Frame = 0
Match: A0A833XK07 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5467160.1}))
HSP 1 Score: 455.677 bits (1171), Expect = 1.255e-155
Identity = 220/295 (74.58%), Postives = 250/295 (84.75%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTN 450
D + + EA+TV AP V+IPA SV +SALAGG+SCA S +MHPVDTIKTQVQASTLT PEII K+PQIGARGLY+GSIPA+ GQF HGLRT I EASK VL+ + PT+PDIQVQS +S ST LGT R+P EV+KQRLQAGI++NVGEAL+GTWQQD LKGFFRGTGATLCREVPFYVAG G+YAESKK VQ LLGR+LEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+ +SMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMD+
Sbjct: 152 DDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSCALMHPVDTIKTQVQASTLTFPEIISKLPQIGARGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINIAPTVPDIQVQSLSSFCSTFLGTAVRIPCEVLKQRLQAGIFDNVGEALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKVVQQLLGRDLEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPQGRSISMSMVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDKNE 446
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AVL7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8534348.1}))
HSP 1 Score: 447.588 bits (1150), Expect = 2.161e-154
Identity = 218/297 (73.40%), Postives = 249/297 (83.84%), Query Frame = 0
Match: A0A5J5AVL7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8534348.1}))
HSP 1 Score: 447.588 bits (1150), Expect = 2.161e-154
Identity = 218/297 (73.40%), Postives = 249/297 (83.84%), Query Frame = 0
Query: 159 DSEKEMTCEASTVA---PTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTNAQ 452
+ + + EA+TV P V+IPA SV KSALAGG+SCA S+ +MHP+DTIKT+VQASTLT PEII K+PQIGARGLY+GSIPA+ GQF HGLRT I EASK VL+ + PTLPD+QVQS AS ST LGT R+P EV+KQRLQAGI++NVGEA++GTW QD LKGFFRGTGATLCREVPFYVAG G+YAESKK VQ LLGRELEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+ VSMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAM + Q
Sbjct: 27 EDPRSIWFEAATVVAVPPPVEIPAGSVLKSALAGGLSCALSTSLMHPMDTIKTRVQASTLTFPEIISKLPQIGARGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINVAPTLPDLQVQSVASFCSTFLGTAVRIPCEVLKQRLQAGIFDNVGEAIVGTWNQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKVVQQLLGRELEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPQGRSVSMSVVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMVKNEEQ 323
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZDS4 ((mitochondrial substrate carrier family protein C {ECO:0000313|RefSeq:XP_015877085.1}))
HSP 1 Score: 458.759 bits (1179), Expect = 8.552e-152
Identity = 218/294 (74.15%), Postives = 252/294 (85.71%), Query Frame = 0
HSP 2 Score: 60.077 bits (144), Expect = 5.386e-7
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 0
HSP 3 Score: 50.447 bits (119), Expect = 5.859e-4
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 0
Match: A0A6P3ZDS4 ((mitochondrial substrate carrier family protein C {ECO:0000313|RefSeq:XP_015877085.1}))
HSP 1 Score: 458.759 bits (1179), Expect = 8.552e-152
Identity = 218/294 (74.15%), Postives = 252/294 (85.71%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRT 449
D + + EA+TV AP V IPA SV +SALAGG+SCA S+ +MHP+DTIKT+VQASTL+ PEII K+PQIG +GLY+GSIPA+ GQF HGLRT I EASK VL+ + PTLPDIQVQS +S STVLGT R+P EV+KQRLQAG+++NVGEA++GTW QD LKGFFRGTGATLCREVPFYVAG G+YAESKKAVQ +LGRELEPWETI+VGA+SGGLA+V TTPFDV+KTRMMTA G+PVSMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMDR
Sbjct: 521 DDPRSIWFEAATVVAVAPPVQIPAGSVLRSALAGGLSCALSTSLMHPIDTIKTRVQASTLSFPEIISKLPQIGVQGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINVAPTLPDIQVQSISSFCSTVLGTAVRIPCEVLKQRLQAGLFDNVGEAIVGTWHQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKAVQQILGRELEPWETIMVGALSGGLAAVVTTPFDVMKTRMMTAPQGRPVSMSMVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDRN 814
HSP 2 Score: 60.077 bits (144), Expect = 5.386e-7
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 0
Query: 69 KVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTP---SGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
K G SVECF+G FD L QNL K + G E D C +P S F+H + I GR+ D +G L N++FARVGGVP+G V V S E + + S K LAG I S + V+ +++ + ST++L E+I +PQ+G
Sbjct: 208 KEGNNVSVECFIGFFFDKLTQNLPKFDNGLQE---NSQDNCDASPLPTSSTYFDHFGVVKAIIDGRKADVNGFLGNLRFARVGGVPSGVVGVASSVNEEGADGVNADNGDETGGNSPQK--LAGSI----LSIPLSNVERLRSTL--STVSLAELIELVPQLG 359
HSP 3 Score: 50.447 bits (119), Expect = 5.859e-4
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVK--NAFAPFEFSFQKVTNDFQHCWSASRN 45
MV N+P+ESF NS+Q+VK F P E S QK D + CW+ +N
Sbjct: 1 MVSANDPIESFLNSIQVVKLKEVFLPLELSVQKAAKDLECCWAGPKN 47
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9EJ00 ((mitochondrial substrate carrier family protein C-like {ECO:0000313|RefSeq:XP_035547469.1}))
HSP 1 Score: 456.062 bits (1172), Expect = 5.913e-151
Identity = 220/294 (74.83%), Postives = 250/294 (85.03%), Query Frame = 0
HSP 2 Score: 67.781 bits (164), Expect = 2.441e-9
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 0
HSP 3 Score: 57.7658 bits (138), Expect = 3.358e-6
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0
Match: A0A6P9EJ00 ((mitochondrial substrate carrier family protein C-like {ECO:0000313|RefSeq:XP_035547469.1}))
HSP 1 Score: 456.062 bits (1172), Expect = 5.913e-151
Identity = 220/294 (74.83%), Postives = 250/294 (85.03%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRT 449
D + + EA+TV AP V+IPA SV +SALAGG+SCA S +MHPVDTIKTQVQASTLT PEII K+PQIGARGLY+GSIPA+ GQF HGLRT I EASK VL+ + PT+PDIQVQS +S ST LGT R+P EV+KQRLQAGI++NVGEAL+GTWQQD LKGFFRGTGATLCREVPFYVAG G+YAESKK VQ LLGR+LEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+ +SMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMD+
Sbjct: 511 DDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSCALMHPVDTIKTQVQASTLTFPEIISKLPQIGARGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINIAPTVPDIQVQSLSSFCSTFLGTAVRIPCEVLKQRLQAGIFDNVGEALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKVVQQLLGRDLEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPQGRSISMSMVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDKN 804
HSP 2 Score: 67.781 bits (164), Expect = 2.441e-9
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 0
Query: 65 GSHSKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTPSGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
G+ K S ECF+G +FD L+QNLQK + GA E + D L + S + +H +AL I +GR+ D + L N++FARVGGVP+ V V S E + +VA A +A GI S + V+ +++ + ST++L E+I +PQ+G
Sbjct: 195 GTFQNQEKHVSPECFIGFIFDQLIQNLQKFDQGAQEYDHKSYDTSLSSSSSHP-DHFRALTSILEGRKADVNSFLGNLRFARVGGVPSSVVGVTSSVNEEGDD--SVAAGNGEEAGGTIPQKMASGI----LSIPLSNVERLRSTL--STVSLTELIELVPQLG 349
HSP 3 Score: 57.7658 bits (138), Expect = 3.358e-6
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNAISFVAKKSELRILCGSHSKVGKEWSVECFLG 81
MV N+P+ESF NSVQ+VK A +P E +K D +HCW N++ + S C K+ + +C +G
Sbjct: 1 MVAANDPMESFFNSVQVVKEALSPLELGIRKAAKDLEHCWGGGLKNKGNSVELANQVSVDDRNCKVQISGVKKKNGQCVVG 81
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9EK77 ((mitochondrial substrate carrier family protein C-like {ECO:0000313|RefSeq:XP_035547781.1}))
HSP 1 Score: 456.062 bits (1172), Expect = 6.042e-151
Identity = 220/294 (74.83%), Postives = 250/294 (85.03%), Query Frame = 0
HSP 2 Score: 67.781 bits (164), Expect = 2.377e-9
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 0
HSP 3 Score: 57.7658 bits (138), Expect = 3.215e-6
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0
Match: A0A6P9EK77 ((mitochondrial substrate carrier family protein C-like {ECO:0000313|RefSeq:XP_035547781.1}))
HSP 1 Score: 456.062 bits (1172), Expect = 6.042e-151
Identity = 220/294 (74.83%), Postives = 250/294 (85.03%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRT 449
D + + EA+TV AP V+IPA SV +SALAGG+SCA S +MHPVDTIKTQVQASTLT PEII K+PQIGARGLY+GSIPA+ GQF HGLRT I EASK VL+ + PT+PDIQVQS +S ST LGT R+P EV+KQRLQAGI++NVGEAL+GTWQQD LKGFFRGTGATLCREVPFYVAG G+YAESKK VQ LLGR+LEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+ +SMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMD+
Sbjct: 511 DDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSCALMHPVDTIKTQVQASTLTFPEIISKLPQIGARGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINIAPTVPDIQVQSLSSFCSTFLGTAVRIPCEVLKQRLQAGIFDNVGEALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKVVQQLLGRDLEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPQGRSISMSMVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDKN 804
HSP 2 Score: 67.781 bits (164), Expect = 2.377e-9
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 0
Query: 65 GSHSKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTPSGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
G+ K S ECF+G +FD L+QNLQK + GA E + D L + S + +H +AL I +GR+ D + L N++FARVGGVP+ V V S E + +VA A +A GI S + V+ +++ + ST++L E+I +PQ+G
Sbjct: 195 GTFQNQEKHVSPECFIGFIFDQLIQNLQKFDQGAQEYDHKSYDTSLSSSSSHP-DHFRALTSILEGRKADVNSFLGNLRFARVGGVPSSVVGVTSSVNEEGDD--SVAAGNGEEAGGTIPQKMASGI----LSIPLSNVERLRSTL--STVSLTELIELVPQLG 349
HSP 3 Score: 57.7658 bits (138), Expect = 3.215e-6
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNAISFVAKKSELRILCGSHSKVGKEWSVECFLG 81
MV N+P+ESF NSVQ+VK A +P E +K D +HCW N++ + S C K+ + +C +G
Sbjct: 1 MVAANDPMESFFNSVQVVKEALSPLELGIRKAAKDLEHCWGGGLKNKGNSVELANQVSVDDRNCKVQISGVKKKNGQCVVG 81
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059BGM8 (EF-hand domain-containing protein {ECO:0000259|PROSITE:PS50222})
HSP 1 Score: 455.677 bits (1171), Expect = 1.679e-150
Identity = 217/295 (73.56%), Postives = 253/295 (85.76%), Query Frame = 0
HSP 2 Score: 71.2478 bits (173), Expect = 1.658e-10
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0
HSP 3 Score: 49.2914 bits (116), Expect = 1.561e-3
Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 0
Match: A0A059BGM8 (EF-hand domain-containing protein {ECO:0000259|PROSITE:PS50222})
HSP 1 Score: 455.677 bits (1171), Expect = 1.679e-150
Identity = 217/295 (73.56%), Postives = 253/295 (85.76%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTN 450
D + + EA+TV AP V+IPA SV KSALAGG+SCA S+ +MHPVDT+KT+VQASTL+ P+II K+PQIG RG+Y+GSIPA+ GQF HGLRT I EASK +L+ + PTLPDIQVQS AS STVLGT R+P EV+KQRLQAGI++NVGEA +GTWQQD KGFFRGTGATLCREVPFYVAG G+YAESKK VQHL+GRELEPWETI+VGA+SGGLA+VTTTPFDVIKTRMMTA G+ VSM+ +AFSI+R+EGPLGLFKGAVPRFFW+APLGAMNFAGYELL+K MD+
Sbjct: 528 DDPRNVWFEAATVVPVAPPVEIPAGSVLKSALAGGLSCALSTSLMHPVDTVKTRVQASTLSFPDIIAKLPQIGVRGVYRGSIPAILGQFSSHGLRTGIFEASKLILINVAPTLPDIQVQSLASFCSTVLGTAVRIPCEVLKQRLQAGIFDNVGEAFVGTWQQDGPKGFFRGTGATLCREVPFYVAGMGLYAESKKLVQHLVGRELEPWETIVVGALSGGLAAVTTTPFDVIKTRMMTAPRGRSVSMTMVAFSILRREGPLGLFKGAVPRFFWIAPLGAMNFAGYELLKKTMDKNE 822
HSP 2 Score: 71.2478 bits (173), Expect = 1.658e-10
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0
Query: 75 SVECFLGGLFDDLVQNLQKLN-LGAGEIE---CTISDLCLGTPSGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
S+ECFLG + D L QN K + + + E S + P +FNH++A+ I++ R+ D +G L N++FARVGGVP V V S KE T + + + + LAGGI S + V+ +K+ + ST++L E+I +PQ+G
Sbjct: 218 SIECFLGFILDQLAQNFPKFDQVVQPQFEGDAAKASSAVVDPP--EQFNHLRAVASIWEVRKADVNGFLGNLRFARVGGVPPSIVEVTSSVKEETDDGAASG-SREESNSGTSAQKLAGGI----LSIPLSNVERLKSTL--STVSLTELIELVPQLG 366
HSP 3 Score: 49.2914 bits (116), Expect = 1.561e-3
Identity = 21/58 (36.21%), Postives = 32/58 (55.17%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCW--SASRNGADNAISFVAK 56
MV N+P+ESF N++Q VK A +P E +K D + CW S S+ + +A+
Sbjct: 1 MVSANDPIESFLNTIQAVKGALSPLESGIRKAAKDIESCWPGSNSKRKGSGGVELIAQ 58
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P6SJM7 ((Putative mitochondrial carrier protein {ECO:0000313|EMBL:PRQ58876.1}))
HSP 1 Score: 454.521 bits (1168), Expect = 2.939e-150
Identity = 216/295 (73.22%), Postives = 251/295 (85.08%), Query Frame = 0
HSP 2 Score: 68.5514 bits (166), Expect = 1.460e-9
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0
HSP 3 Score: 64.6994 bits (156), Expect = 2.156e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0
Match: A0A2P6SJM7 ((Putative mitochondrial carrier protein {ECO:0000313|EMBL:PRQ58876.1}))
HSP 1 Score: 454.521 bits (1168), Expect = 2.939e-150
Identity = 216/295 (73.22%), Postives = 251/295 (85.08%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTN 450
D + + EA+TV AP V+IPA SV +SALAGG+SCA S+ +MHPVDTIKT+VQASTLT PEII K+PQIG RGLY+GS+PA+ GQF HGLRT I EASK VL+ + PTLPDIQVQS AS STVLGT R+P EV+KQR QAG+++NVG+AL+GTW QD LKGFFRGTGATLCREVPFYVAG G+YAESKK Q +LGRELEPWETI+VGA+SGGLA+V TTPFDV+KTRMMTA G+P+SMS +A+SI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMDR +
Sbjct: 515 DDPRSIWFEAATVVAVAPPVEIPAGSVLRSALAGGLSCALSTALMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSVPAILGQFSSHGLRTGIFEASKLVLINVAPTLPDIQVQSLASFCSTVLGTAVRIPCEVLKQRCQAGLFDNVGQALVGTWHQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKVAQQVLGRELEPWETIVVGALSGGLAAVVTTPFDVMKTRMMTAPQGRPISMSIVAYSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDRNH 809
HSP 2 Score: 68.5514 bits (166), Expect = 1.460e-9
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0
Query: 11 FHNS-VQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNAISFVAKKSELRILCGSH--SKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTPSGNKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTI-KTQVQASTLTLPEIIVKIPQIG 228
F NS VQ F + QK++++ + C + + + +K +R + K G S+ECF+G +FD L QNLQK + G E +C D P + F+H + + G+ + R + +G L N+KFARVGGVP+G V V E + T + + + S K A S + P+ + + + ST++L E+I +P +G
Sbjct: 141 FVNSFVQAFPGPFKMGKKRLQKMSDEDRACLCSRPEVSGDLKQRESKDHHVREIRNESVAHKHGNNVSLECFIGFVFDQLTQNLQKFDQGVQESDCETCDASPQPPPSSHFDHFRVVTGLLESRTAEVNGFLGNLKFARVGGVPSGVVGVPSPVNEEGDDGVTASNSGESAGSSPQKLA---------SDILSIPLSNVERLRSTLSTVSLTELIELVPHLG 353
HSP 3 Score: 64.6994 bits (156), Expect = 2.156e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNAISFVAKKS 58
MV N+P+ESF NS+QLVK AF+P E S +K DF+ CW+ S+N NA+ V + S
Sbjct: 1 MVTANDPIESFFNSIQLVKEAFSPLELSIKKAARDFECCWAGSKNRG-NAVELVTQFS 57
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DCC7 ((Uncharacterized protein {ECO:0000313|EMBL:THF99793.1}))
HSP 1 Score: 437.187 bits (1123), Expect = 5.970e-150
Identity = 212/291 (72.85%), Postives = 242/291 (83.16%), Query Frame = 0
Match: A0A4S4DCC7 ((Uncharacterized protein {ECO:0000313|EMBL:THF99793.1}))
HSP 1 Score: 437.187 bits (1123), Expect = 5.970e-150
Identity = 212/291 (72.85%), Postives = 242/291 (83.16%), Query Frame = 0
Query: 167 EASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRTNAQKV 454
EA+TV AP VD+PA SV KSALAGG+SCA S +MHPVDT+KTQVQASTL PEI+ K+PQIG +G+YKGSIPA+ GQF HGLRT ICEASK VL+ + P LPDIQVQS AS STVLGT R+P EV+KQRLQAGI++NVGEA++GTW QD LKGFFRGTGATL REVPFYVAG G+YAESKK Q LLGR+LEPWETI+VGA+SGGL +V+TTPFDVIKTRMMTA G+ +SMS + I+R+EGPLG FKGAVPRFFWVAPLGAMNFAGYEL RKAM+R V
Sbjct: 55 EAATVVAVAPPVDLPANSVLKSALAGGLSCALSCALMHPVDTVKTQVQASTLNFPEILSKLPQIGLQGVYKGSIPAILGQFSSHGLRTGICEASKLVLINVAPNLPDIQVQSVASFSSTVLGTAVRIPCEVLKQRLQAGIFDNVGEAIVGTWNQDGLKGFFRGTGATLFREVPFYVAGMGLYAESKKVAQRLLGRDLEPWETIVVGALSGGLTAVSTTPFDVIKTRMMTAPGGRRLSMSMVTIFILRREGPLGFFKGAVPRFFWVAPLGAMNFAGYELARKAMERNKDDPV 345
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061FMI9 ((Mitochondrial substrate carrier family protein isoform 1 {ECO:0000313|EMBL:EOY18550.1}))
HSP 1 Score: 453.751 bits (1166), Expect = 8.405e-150
Identity = 217/294 (73.81%), Postives = 249/294 (84.69%), Query Frame = 0
HSP 2 Score: 82.4185 bits (202), Expect = 4.575e-14
Identity = 70/220 (31.82%), Postives = 106/220 (48.18%), Query Frame = 0
HSP 3 Score: 55.0694 bits (131), Expect = 2.042e-5
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0
Match: A0A061FMI9 ((Mitochondrial substrate carrier family protein isoform 1 {ECO:0000313|EMBL:EOY18550.1}))
HSP 1 Score: 453.751 bits (1166), Expect = 8.405e-150
Identity = 217/294 (73.81%), Postives = 249/294 (84.69%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRT 449
D + + EA+TV AP V+IPA SV KSALAGG+SCA S+ +MHPVDTIKT+VQASTLT PEII K+PQIG RGLY+GS+PA+ GQF HGLRT I EASK VL+ + P LPDIQVQS AS ST+LGT R+P EV+KQRLQAG+++NVG+AL+GTWQQD LKGFFRGTGATLCREVPFYVAG G+YAESKK Q LL RELEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+P+SMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMD+
Sbjct: 532 DDPRNIWFEAATVVAVAPPVEIPAGSVLKSALAGGLSCALSTSLMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSVPAILGQFSSHGLRTGIFEASKLVLINVAPNLPDIQVQSMASFCSTLLGTAVRIPCEVLKQRLQAGLFDNVGQALVGTWQQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKLAQQLLRRELEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPGGRPISMSLVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDKN 825
HSP 2 Score: 82.4185 bits (202), Expect = 4.575e-14
Identity = 70/220 (31.82%), Postives = 106/220 (48.18%), Query Frame = 0
Query: 15 VQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNAISFVAKKSELRILC-----GSHSKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTPSG-NKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
VQ + + F QK+ + + C ++ + SF ++ E R G GK S EC +G +FD L QNLQK + E D C PS F+H+KA+ +++GR+ D +G L N+KFARVGGVP+G V V S E + T + S K LA GI S + V+ +++ + ST++L E+I +P +G
Sbjct: 159 VQAIPSLFKSGRKQIQKMGDKDEVCLNSYSHDMKLKSSFEFERKESRAQFVAENEGLEHNDGKRVSFECLIGFIFDQLTQNLQKFDQLLQESNQKHCD-CPSAPSPPAHFDHLKAVTSLWEGRKADVNGFLGNLKFARVGGVPSGIVGVASSVNEEGDDGVTTGSREEAGGNSPQK--LASGI----LSIPLSNVERLRSTL--STVSLTELIELLPPLG 369
HSP 3 Score: 55.0694 bits (131), Expect = 2.042e-5
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADN 49
MV N+P+ES NS+Q +K AF P EF +K D + CW S + +N
Sbjct: 1 MVSTNDPIESISNSIQFIKEAFLPLEFGIKKAAKDLESCWGVSNDKGNN 49
BLAST of XM_017373895.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YY17 ((uncharacterized protein LOC111295762 {ECO:0000313|RefSeq:XP_022745221.1, ECO:0000313|RefSeq:XP_022745222.1}))
HSP 1 Score: 453.366 bits (1165), Expect = 1.118e-149
Identity = 218/294 (74.15%), Postives = 247/294 (84.01%), Query Frame = 0
HSP 2 Score: 79.337 bits (194), Expect = 4.338e-13
Identity = 66/220 (30.00%), Postives = 108/220 (49.09%), Query Frame = 0
HSP 3 Score: 54.299 bits (129), Expect = 4.191e-5
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0
Match: A0A6P5YY17 ((uncharacterized protein LOC111295762 {ECO:0000313|RefSeq:XP_022745221.1, ECO:0000313|RefSeq:XP_022745222.1}))
HSP 1 Score: 453.366 bits (1165), Expect = 1.118e-149
Identity = 218/294 (74.15%), Postives = 247/294 (84.01%), Query Frame = 0
Query: 159 DSEKEMTCEASTV---APTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIGARGLYKGSIPAVSGQFLGHGLRTAICEASKFVLVYLVPTLPDIQVQSAASLWSTVLGTTFRVPTEVIKQRLQAGIYENVGEALIGTWQQDSLKGFFRGTGATLCREVPFYVAGAGVYAESKKAVQHLLGRELEPWETILVGAVSGGLASVTTTPFDVIKTRMMTAIPGQPVSMSTIAFSIIRQEGPLGLFKGAVPRFFWVAPLGAMNFAGYELLRKAMDRT 449
D + + EA+TV AP V+IPA SV KSALAGG+SCA S+ +MHPVDTIKT+VQASTLT PEII K+PQIG RGLY+GSIPA+ GQF HGLRT I EASK VL+ + P LPDIQVQS AS ST LGT R+P EV+KQRLQAG+++NVGEAL+GTW QD LKGFFRGTGATLCREVPFYVAG G+YAESKK Q LL RELEPWETI VGA+SGGLA+V TTPFDV+KTRMMTA G+P+SMS +AFSI+R EGPLGLFKGAVPRFFW+APLGAMNFAGYEL RKAMD+
Sbjct: 531 DDPRNIWFEAATVVAVAPPVEIPAGSVLKSALAGGLSCALSTSLMHPVDTIKTRVQASTLTFPEIISKLPQIGVRGLYRGSIPAILGQFSSHGLRTGIFEASKLVLINVAPNLPDIQVQSMASFCSTFLGTAVRIPCEVLKQRLQAGLFDNVGEALVGTWHQDGLKGFFRGTGATLCREVPFYVAGMGLYAESKKLAQQLLRRELEPWETIAVGALSGGLAAVVTTPFDVMKTRMMTAPGGRPISMSMVAFSILRHEGPLGLFKGAVPRFFWIAPLGAMNFAGYELARKAMDKN 824
HSP 2 Score: 79.337 bits (194), Expect = 4.338e-13
Identity = 66/220 (30.00%), Postives = 108/220 (49.09%), Query Frame = 0
Query: 15 VQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADNA--ISFVAKKSELRILC---GSHSKVGKEWSVECFLGGLFDDLVQNLQKLNLGAGEIECTISDLCLGTPSG-NKFNHVKALVGIFKGRRTDDSGVLLNVKFARVGGVPAGNVAVIDSEKEMTCEASTVAPTVDIPAESVFKSALAGGISCAFSSFIMHPVDTIKTQVQASTLTLPEIIVKIPQIG 228
VQ + ++F QK+ + + C ++S + + F +K+ + + G G S ECF+G +FD L QNLQK + E D C PS ++ +H KA+ I++GR+ + +G L N+KFARVGGVP+G V V S E + + + + S K LA GI + V+ +++ + A +LT E+I +P +G
Sbjct: 158 VQAIPSSFKSGRKRIQKMGDKDKGCRNSSTHDMKSKAPFEFKCRKARAQFIAKNEGMEHNDGNHVSFECFIGFIFDQLTQNLQKFDKLLQESNQKHFD-CRQAPSSPSQLDHFKAVTSIWEGRKVNVNGFLGNLKFARVGGVPSGIVGVASSVNEEGGDGVSAGSREETGSHSPQK--LASGI----LGIPLSNVERLRSTLSAVSLT--ELIELLPPLG 368
HSP 3 Score: 54.299 bits (129), Expect = 4.191e-5
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0
Query: 1 MVPGNNPLESFHNSVQLVKNAFAPFEFSFQKVTNDFQHCWSASRNGADN 49
MV N+P+ES NS+QL+K AF P E +K D + CW S + +N
Sbjct: 1 MVSKNDPIESISNSIQLIKEAFLPLELGVKKAAKDLESCWGVSNDKGNN 49
| Match Name | Stats | Description |
|---|---|---|
| A0A833XK07 | E-Value: 1.255e-155, PID: 74.58 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5467... [more] |
| A0A5J5AVL7 | E-Value: 2.161e-154, PID: 73.40 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8534... [more] |
| A0A6P3ZDS4 | E-Value: 8.552e-152, PID: 74.15 | (mitochondrial substrate carrier family protein C ... [more] |
| A0A6P9EJ00 | E-Value: 5.913e-151, PID: 74.83 | (mitochondrial substrate carrier family protein C-... [more] |
| A0A6P9EK77 | E-Value: 6.042e-151, PID: 74.83 | (mitochondrial substrate carrier family protein C-... [more] |
| A0A059BGM8 | E-Value: 1.679e-150, PID: 73.56 | EF-hand domain-containing protein {ECO:0000259|PRO... [more] |
| A0A2P6SJM7 | E-Value: 2.939e-150, PID: 73.22 | (Putative mitochondrial carrier protein {ECO:00003... [more] |
| A0A4S4DCC7 | E-Value: 5.970e-150, PID: 72.85 | (Uncharacterized protein {ECO:0000313|EMBL:THF9979... [more] |
| A0A061FMI9 | E-Value: 8.405e-150, PID: 73.81 | (Mitochondrial substrate carrier family protein is... [more] |
| A0A6P5YY17 | E-Value: 1.118e-149, PID: 74.15 | (uncharacterized protein LOC111295762 {ECO:0000313... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |