Resource Type:
Polypeptide
Name:
XM_017374420.1
Identifier:
XM_017374420.1-protein
Sequence:
MADSQHSARSSTVTVNDGDDEVSGGFLPLASGPQQPYVSELLSFTLDRLH
KEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLT
SMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLM
DTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQL
LQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDL
DQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSW
ATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLL
PPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQ
EDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLR
AVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGA
SLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGV
IDNGGQTESLGAVEKEEHDTSPQTEEKPVNDDATRA
Sequence Length:
586
Sequence Checksum:
b0b0d21516248c2e088d80e239cf3784
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374420.1, derives from mRNA, XM_017374420.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TD67 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 954.896 bits (2467), Expect = 0.000e+0
Identity = 466/572 (81.47%), Postives = 514/572 (89.86%), Query Frame = 0
Match: A0A6I9TD67 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 954.896 bits (2467), Expect = 0.000e+0
Identity = 466/572 (81.47%), Postives = 514/572 (89.86%), Query Frame = 0
Query: 19 DDEVSGG---FLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEK-PVNDDATRA 586
DD+VS LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV NYRAFI+AADALL +R+EVS+IDKHL S+IAEIP LTSGCTEF+DSAE ILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FVGKL+TMHP +PVIQALA EV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV+SEYEMRLQFLRCREAWLTG LDDLDQRN YEYLKGM+NCHRMHLFDVVNQYRAIFADDTSG+EEN+DGGLLF WA HQIT HLK LKVMLPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLF+KNM TAVENFQLVLDSHRWVPLPAVGF ANS G+E+Q+D+TPP +LM+HPPLAVF+NGVSAAMNELRPCAP+ LK ++AQEL+KGL+AVSDSLLRYNTTRMLR+NESVLFL LC+SF EVAFPHCATCF RCY GGA+LITDSK LFDGI+RL+A S SR+LPKPV+N+E KN ENG +P ENGV+ +T SL EKE+++ SPQ EEK + +DA R+
Sbjct: 12 DDDVSAAMSNLLPLASAAQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVGNYRAFIAAADALLEIREEVSAIDKHLESLIAEIPTLTSGCTEFVDSAEHILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVGKLTTMHPNIPVIQALATEVQQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGTLDDLDQRNPYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGNEENYDGGLLFDWAMHQITLHLKSLKVMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFAKNMSTAVENFQLVLDSHRWVPLPAVGFPANSLGEESQDDITPPSSLMEHPPLAVFINGVSAAMNELRPCAPLNLKNVLAQELVKGLQAVSDSLLRYNTTRMLRDNESVLFLKLCQSFIEVAFPHCATCFNRCYPGGAALITDSKNLFDGISRLLATSTSRELPKPVHNTEAKNVAENGNSPTVENGVLHGVERTASLSPEEKEQNNVSPQKEEKTTIREDAQRS 583
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9HVK9 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 953.355 bits (2463), Expect = 0.000e+0
Identity = 466/571 (81.61%), Postives = 509/571 (89.14%), Query Frame = 0
Match: A0A2G9HVK9 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 953.355 bits (2463), Expect = 0.000e+0
Identity = 466/571 (81.61%), Postives = 509/571 (89.14%), Query Frame = 0
Query: 18 GDDEVS---GGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEKPVNDDATR 585
+D+VS LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV NYRAFI+AADALL +R+EVSSIDKHL S+IAEIPKLT+GCTEF+DSAE ILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KL+TMHPK+PVIQALAAEV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV+SEYEMRLQFLRCREAWLTG+LDDLDQRN YEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGL+F WA HQIT HL LKVMLPKI+EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGF ANS G+E+QEDVTPP NLM+HPPLAVF+NGVSAAMNELRPCAPI LK ++AQELIKGL+AVSDSLLRYNTTRMLR NESVLFL LC++F EVAFPHCA CFGRCY GGA+LITD+K LFDGI RL+A S SR+LPKPV+N+E KN +ENG P ENGV+ + +T S EKE+ + + EEK + TR
Sbjct: 11 ANDDVSTEMSNLLPLASAAQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVGNYRAFIAAADALLEIREEVSSIDKHLESLIAEIPKLTAGCTEFVDSAEHILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVAKLTTMHPKIPVIQALAAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGLLDDLDQRNPYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLIFDWAMHQITLHLNTLKVMLPKISEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMNTAVENFQLVLDSHRWVPLPAVGFPANSLGEESQEDVTPPSNLMEHPPLAVFINGVSAAMNELRPCAPISLKNVLAQELIKGLQAVSDSLLRYNTTRMLRGNESVLFLKLCQAFIEVAFPHCAICFGRCYPGGAALITDAKNLFDGIGRLLATSPSRELPKPVHNAEAKNVSENGNLPMVENGVVHSIERTASASLEEKEQSNVALPDEEKTETSEDTR 581
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251SZ55 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 948.347 bits (2450), Expect = 0.000e+0
Identity = 464/571 (81.26%), Postives = 513/571 (89.84%), Query Frame = 0
Match: A0A251SZ55 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 948.347 bits (2450), Expect = 0.000e+0
Identity = 464/571 (81.26%), Postives = 513/571 (89.84%), Query Frame = 0
Query: 14 TVNDGDDEVSGGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENG-VIDNGGQTESLGAVEKEE-HDTSP--QTEEKPVN 580
T ++ LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV+NYR+FISAADAL+++R EVSSIDKHL S+IAE+PKLTSGC+EFI+SAEQILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLSTMHPKLPVIQALAAEV+ T+SLL+QLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRE+WL+GILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQI+SHLK LKVMLPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGFS+NSFG+E QEDVTPPPNLM+HPPLAVFVNGVSAAMNELRPCAPI LK+I+AQEL+KGLR VSDSLLRYNTTR+LRENESVLFLS+CR+F EVA+PHCATCFGRCY GG+SLITD +F+G+NRL+ S SR LPK V ++E K ENG++P ENG V+ + + E+ VE++ ++TS Q EE+ VN
Sbjct: 7 TADESSSATMAELLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVNNYRSFISAADALVSIRHEVSSIDKHLESLIAEVPKLTSGCSEFIESAEQILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVSKLSTMHPKLPVIQALAAEVQEITKSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRESWLSGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQISSHLKTLKVMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMNTAVENFQLVLDSHRWVPLPAVGFSSNSFGEEGQEDVTPPPNLMEHPPLAVFVNGVSAAMNELRPCAPISLKHILAQELVKGLRTVSDSLLRYNTTRVLRENESVLFLSMCRAFVEVAYPHCATCFGRCYTGGSSLITDGNHVFEGLNRLLTTSSSRQLPKRVQSAETK---ENGDSPAVENGVVVADVNEAENKNVVEEDNVNNTSSEIQNEEQTVN 574
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9QY00 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 947.577 bits (2448), Expect = 0.000e+0
Identity = 465/563 (82.59%), Postives = 508/563 (90.23%), Query Frame = 0
Match: W9QY00 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 947.577 bits (2448), Expect = 0.000e+0
Identity = 465/563 (82.59%), Postives = 508/563 (90.23%), Query Frame = 0
Query: 17 DGDDEVS--GGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEK 577
D +E S GG LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV+NYRAFISAADALLA+R+EV+SIDKHL SMIA+IPKLTSGCTEF++SAEQILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FVGKLSTMHPKLPVIQALAAEV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV+SEYEMRLQFLRCREAWL+GIL+DLDQRNAYEYLKGM+NCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSW HQITSHLK LKVMLPKI EGGSLSNILDQCMYC MGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGF ANS +E QE+VTPP LM+HPPLAVFVNGVSAAMNELRPCAPI LK+++AQELIKGL+ VSD LLRYNTTRMLRENES LFLSLCR+F EVA+PHCATCFGRCY GGA+LI D+K L+DG++RL+ S SR+L KPV+N E K TENGE P AENG + QT A E+E+ +++ ++EK
Sbjct: 5 DAAEEASTVGGLLPLASASQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVNNYRAFISAADALLAIREEVTSIDKHLESMIADIPKLTSGCTEFVESAEQILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVGKLSTMHPKLPVIQALAAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLSGILEDLDQRNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWPMHQITSHLKTLKVMLPKINEGGSLSNILDQCMYCTMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPLPAVGFPANSVVEETQEEVTPPSYLMEHPPLAVFVNGVSAAMNELRPCAPISLKHVLAQELIKGLQTVSDYLLRYNTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKNLYDGVSRLLTVSSSRELRKPVSNEEGKGITENGEVPSAENG-FTSVEQTGDANADEREQKNSASPSDEK 566
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YWL3 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 463/556 (83.27%), Postives = 505/556 (90.83%), Query Frame = 0
Match: A0A5B6YWL3 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 463/556 (83.27%), Postives = 505/556 (90.83%), Query Frame = 0
Query: 24 GGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINR--LVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEK 577
G LPLAS QQPYVSELLSFTLDRLHKEPELL VDAERI +QMQEVAV NYRAFISAADALL +R+EVSSIDKHL S+I EIPKLT+GCTEFIDSAEQILEKRK+NQ LL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLSTMHPKLPVIQAL+AEV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV+SEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQITSHLK KV+LPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLP LFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGF ANS G+E QEDVTPP +LM+HPPLAVFVNGVSAAMNELRPCAP+ LK+++AQEL+KGL+AVSDSLLRYNTTRMLRENESVLFLSLCR+F EVA+PHCATCFGRCY GGA+LI D+K LFDGI+R L +S SR++PK V N+E ++ +ENG+ P ENGV+ + QTES E E+++++ Q EEK
Sbjct: 16 AGLLPLASFSQQPYVSELLSFTLDRLHKEPELLWVDAERIRRQMQEVAVGNYRAFISAADALLEIREEVSSIDKHLESLIVEIPKLTAGCTEFIDSAEQILEKRKMNQRLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVCKLSTMHPKLPVIQALSAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLKTFKVILPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSKNMCTAVENFQLVLDSHRWVPLPAVGFPANSVGEEIQEDVTPPSSLMEHPPLAVFVNGVSAAMNELRPCAPLSLKHVLAQELVKGLQAVSDSLLRYNTTRMLRENESVLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKNLFDGISRRLLATSSSSREVPKTVQNTEARSPSENGDLPAVENGVVPSVEQTESSSVDETEQNNSTLQIEEK 571
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TMT1 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 460/571 (80.56%), Postives = 513/571 (89.84%), Query Frame = 0
Match: A0A251TMT1 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0
Identity = 460/571 (80.56%), Postives = 513/571 (89.84%), Query Frame = 0
Query: 12 TVTVNDGDDEVSGG---FLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAEN-GVIDNGGQTESLGAVEKEE-HDTSPQTEEK 577
T+T + D+ S LPLAS QQPYVSELLSFTLDRLHKEPELLRVDA+RI +QMQEVAV+NYRAFISAADAL+++R EVSSIDKHL S+IAE+PKLTSGC+EFIDSAE ILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLSTMHPKL VIQALA+EV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRE+WL+GILDDL+QRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQI+SHLK LK+MLPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGFS+NSFG+E+QEDVTPPPNLM+HPPLAVF+NGVSAAMNELRPCAPI LK+I+AQEL+KGL+ VSDSLLRYNTTR+LRENESVLFLSLCR+F EVA+PHCATCFGRCY GG+ L+TD LF+G+ RL+ S SR LPK V ++E K+ +ENG + EN G + +TES VE+++ ++TS T+EK
Sbjct: 3 TITPSPSTDDTSATMAELLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDADRIRRQMQEVAVNNYRAFISAADALVSIRNEVSSIDKHLESLIAEVPKLTSGCSEFIDSAESILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVSKLSTMHPKLQVIQALASEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRESWLSGILDDLEQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQISSHLKTLKIMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPLPAVGFSSNSFGEESQEDVTPPPNLMEHPPLAVFINGVSAAMNELRPCAPISLKHILAQELVKGLQTVSDSLLRYNTTRVLRENESVLFLSLCRAFIEVAYPHCATCFGRCYPGGSLLVTDGSNLFEGLTRLLTTSSSRQLPKRVQSAETKSVSENGNSTAVENGGAVAEVKETESSKVVEEDDVNNTSSITQEK 573
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1NMW8 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 459/562 (81.67%), Postives = 502/562 (89.32%), Query Frame = 0
Match: A0A2U1NMW8 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 459/562 (81.67%), Postives = 502/562 (89.32%), Query Frame = 0
Query: 23 SGGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNN---SENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEKPVND 581
S LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV+NYRAFISAADAL+ +R EVS IDKHL +MIAE+PKLTSGC+EFIDSAE ILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE +V KLSTMHPKLPVIQALAAEV+ TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRE+WL+GILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQI SHLK LK+MLPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQ+VLDSHRWVPLPAVGFS +SFG+ENQEDVTPPPNLM+HPPLAVFVNGVSAAMNELRPCAPI LK+I+AQEL+KGLR VSDSLLRYNTTR+LRENESVLFLSLCR+F EVA+PHCAT FGRCY GG+SLITD + LF+GI RL+ SR LPK V N SE KN +ENG + NG ++ +T++ VE++ T Q +E+ + +
Sbjct: 65 SPDLLPLASSSQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVNNYRAFISAADALVQIRNEVSDIDKHLETMIAEVPKLTSGCSEFIDSAENILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVSKLSTMHPKLPVIQALAAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRESWLSGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQIASHLKTLKIMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMSTAVENFQVVLDSHRWVPLPAVGFSTSSFGEENQEDVTPPPNLMEHPPLAVFVNGVSAAMNELRPCAPISLKHILAQELVKGLRTVSDSLLRYNTTRVLRENESVLFLSLCRAFVEVAYPHCATSFGRCYPGGSSLITDGENLFEGITRLLTTHSSRQLPKKVQNAETSETKNVSENGNSSTVANGAPEDAKETDNSSNVEEDNVKTKLQYQEEKIEE 626
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834FU19 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7112629.1}))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 462/564 (81.91%), Postives = 508/564 (90.07%), Query Frame = 0
Match: A0A834FU19 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7112629.1}))
HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 462/564 (81.91%), Postives = 508/564 (90.07%), Query Frame = 0
Query: 17 DGDDEVSGGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTSPQTEEKPVN 580
DG+ VSG LPLAS QQPYVSELLSFTLDRLHKEPELLRVD ERI++QMQEVAV+NYRAFISAADAL+A+R+EVSSIDKHL SMIAEIPKLTSGC EF+DSAE ILEKRKLNQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLS MHPKLPVIQALAAEVK TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV++EYEMRLQFLRCREAWLT ILDDLDQRNAYEYLKGMVNC RMHLFDVVNQYRAIFADDTSGSEEN++GGLLFSWA HQIT+HLK LKVMLP+I EGGSLSNILDQCMYCAMGLGWVGLDFRGLLP LFEEAVLNLFS+NM TAV+NFQLVLDSHRWVPLPA+GF ANS G+++ EDVTPP +LM+HPPLAVFVNGVSAAMNELRPCAPI LK++++QEL KGL++VSDSLLRYNTTRMLRENES+LFLSLCR+F EVA+PHCATCFGRCY GGA+LI+D+K LFDGI RL+AA + LPKP+ N E K+ +ENG ENGV+ N GQT V+ +E + + QTEEKP N
Sbjct: 9 DGNGAVSG-LLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDGERIQRQMQEVAVANYRAFISAADALVAIREEVSSIDKHLESMIAEIPKLTSGCNEFLDSAEHILEKRKLNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVCKLSAMHPKLPVIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFNEYEMRLQFLRCREAWLTAILDDLDQRNAYEYLKGMVNCQRMHLFDVVNQYRAIFADDTSGSEENYEGGLLFSWAMHQITTHLKTLKVMLPRITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSRNMNTAVQNFQLVLDSHRWVPLPAIGFPANSLGEDSLEDVTPPSSLMEHPPLAVFVNGVSAAMNELRPCAPISLKHMLSQELAKGLQSVSDSLLRYNTTRMLRENESILFLSLCRAFIEVAYPHCATCFGRCYPGGAALISDAKNLFDGIGRLLAA---KALPKPIQNEERKSISENGSPNVVENGVMPNAGQTAGSSNVDDKEENITLQTEEKPAN 568
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BSZ7 (Component of oligomeric Golgi complex 8 {ECO:0000256|ARBA:ARBA00019197} (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|ARBA:ARBA00020983}))
HSP 1 Score: 939.102 bits (2426), Expect = 0.000e+0
Identity = 458/526 (87.07%), Postives = 490/526 (93.16%), Query Frame = 0
Match: A0A5J5BSZ7 (Component of oligomeric Golgi complex 8 {ECO:0000256|ARBA:ARBA00019197} (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|ARBA:ARBA00020983}))
HSP 1 Score: 939.102 bits (2426), Expect = 0.000e+0
Identity = 458/526 (87.07%), Postives = 490/526 (93.16%), Query Frame = 0
Query: 24 GGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENG 549
G LPLAS QQPYVSELLSFTLDRLHKEPELL VDAERI +QMQEVAV NYRAFISAADALLA+R+EVSSIDKHL S+I+EIPKLT GCTEFIDSAEQILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLSTMHPKLPVIQALAAEVK TTQSLL+QLLQKLRSNIQLPECLRIIGYLRRIGV+SEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQITSHLK LKV+LPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLP LFEEAVLNLFSKNM TAVENFQLVLDSHRWVPLPAVGF ANS G+E QEDVTPP LM+HPPLAVFVNGVSAAMNELRPCAP+ LK+++AQELIKGL+AVSDSLLRYNTTRMLRE+ES+LFLSLCR+F EVA+PHCATCFGRCY GGASLITD+K LFDGI RL+A S SR++ K V+N+E ++ +ENG+ P ENG
Sbjct: 16 AGLLPLASISQQPYVSELLSFTLDRLHKEPELLWVDAERIRRQMQEVAVGNYRAFISAADALLAIREEVSSIDKHLESLISEIPKLTGGCTEFIDSAEQILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVCKLSTMHPKLPVIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLKTLKVILPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPLPAVGFPANSVGEEIQEDVTPPSTLMEHPPLAVFVNGVSAAMNELRPCAPLSLKHVLAQELIKGLQAVSDSLLRYNTTRMLRESESILFLSLCRAFIEVAYPHCATCFGRCYPGGASLITDTKNLFDGIGRLLATSSSREVVKTVHNTEERSISENGDLPAVENG 541
BLAST of XM_017374420.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6LP04 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 938.332 bits (2424), Expect = 0.000e+0
Identity = 454/555 (81.80%), Postives = 497/555 (89.55%), Query Frame = 0
Match: A0A5N6LP04 (Conserved oligomeric Golgi complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415} (COG complex subunit 8 {ECO:0000256|PIRNR:PIRNR015415}) (Component of oligomeric Golgi complex 8 {ECO:0000256|PIRNR:PIRNR015415}))
HSP 1 Score: 938.332 bits (2424), Expect = 0.000e+0
Identity = 454/555 (81.80%), Postives = 497/555 (89.55%), Query Frame = 0
Query: 17 DGDDEVSGGFLPLASGPQQPYVSELLSFTLDRLHKEPELLRVDAERIEKQMQEVAVSNYRAFISAADALLAVRQEVSSIDKHLTSMIAEIPKLTSGCTEFIDSAEQILEKRKLNQTLLSNHSTLLDLLEIPQLMDTCVRNGNYDEALDLETFVGKLSTMHPKLPVIQALAAEVKHTTQSLLTQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCREAWLTGILDDLDQRNAYEYLKGMVNCHRMHLFDVVNQYRAIFADDTSGSEENHDGGLLFSWATHQITSHLKMLKVMLPKIAEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMGTAVENFQLVLDSHRWVPLPAVGFSANSFGDENQEDVTPPPNLMDHPPLAVFVNGVSAAMNELRPCAPIRLKYIIAQELIKGLRAVSDSLLRYNTTRMLRENESVLFLSLCRSFTEVAFPHCATCFGRCYVGGASLITDSKGLFDGINRLVAASISRDLPKPVNNSENKNTTENGEAPPAENGVIDNGGQTESLGAVEKEEHDTS 571
D E LPLAS QQPYVSELLSFTLDRLHKEPELLRVDAERI +QMQEVAV+NYR+FISAADAL+++R EV SIDKHL S+IAE+PKLTSGC+EF+DSAEQILEKRK+NQTLL+NHSTLLDLLEIPQLMDTCVRNGNYDEALDLE FV KLSTMHPKLPVIQALAAE + TT+SLL+QLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRE+WL+GILDDLDQRNAYEYLKGMVNC RMHLFDVVNQYRAIFADDTSGSEEN+DGGLLFSWA HQI SHLK LKVMLPKI EGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNM TAVENFQLVLDSHRWVP P VGFS+NSFG+E EDVTPPP+LM+HPPLAVFVNGVSAAMNELRPCAPI LK+I+AQEL+KGL VSDSLLRYNTTRMLRENESVLFLSLCRSF EV +PHCATCFGRCY GG+SLI+D +F+G+NRL+ S SR LPK V N+E K ENG++P ENGV+ + ++E+ VE ++ + S
Sbjct: 9 DDSSETMAELLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVNNYRSFISAADALVSIRNEVLSIDKHLESLIAEVPKLTSGCSEFVDSAEQILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVSKLSTMHPKLPVIQALAAEARETTRSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVYSEYEMRLQFLRCRESWLSGILDDLDQRNAYEYLKGMVNCQRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQIASHLKTLKVMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLNLFSKNMKTAVENFQLVLDSHRWVPQPTVGFSSNSFGEEGHEDVTPPPSLMEHPPLAVFVNGVSAAMNELRPCAPISLKHILAQELVKGLHTVSDSLLRYNTTRMLRENESVLFLSLCRSFIEVVYPHCATCFGRCYPGGSSLISDGNSVFEGLNRLLTTSSSRQLPKRVQNAETK---ENGDSPAVENGVVADAKESENSNIVEDKDENQS 560
| Match Name | Stats | Description |
|---|---|---|
| A0A6I9TD67 | E-Value: 0.000e+0, PID: 81.47 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A2G9HVK9 | E-Value: 0.000e+0, PID: 81.61 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A251SZ55 | E-Value: 0.000e+0, PID: 81.26 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| W9QY00 | E-Value: 0.000e+0, PID: 82.59 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A5B6YWL3 | E-Value: 0.000e+0, PID: 83.27 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A251TMT1 | E-Value: 0.000e+0, PID: 80.56 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A2U1NMW8 | E-Value: 0.000e+0, PID: 81.67 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
| A0A834FU19 | E-Value: 0.000e+0, PID: 81.91 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7112... [more] |
| A0A5J5BSZ7 | E-Value: 0.000e+0, PID: 87.07 | Component of oligomeric Golgi complex 8 {ECO:00002... [more] |
| A0A5N6LP04 | E-Value: 0.000e+0, PID: 81.80 | Conserved oligomeric Golgi complex subunit 8 {ECO:... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |