Resource Type:
Polypeptide
Name:
XM_017374416.1
Identifier:
XM_017374416.1-protein
Sequence:
MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKN
GDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDR
ERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGK
GKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPE
RQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPE
RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYI
EFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGI
VPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKG
YGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDF
DDDEGGGLSLNARSRAILMQKLDRSGTTSSILGIPGVSTLGSSQPETSLP
GTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLL
LKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRF
DNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR
Sequence Length:
641
Sequence Checksum:
16574432da9ff2acd6ac9b61f590cc5c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017374416.1, derives from mRNA, XM_017374416.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZBQ0 ((Putative RNA-binding protein 39 {ECO:0000313|EMBL:MPA41510.1}))
HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 436/650 (67.08%), Postives = 495/650 (76.15%), Query Frame = 0
Match: A0A5B6ZBQ0 ((Putative RNA-binding protein 39 {ECO:0000313|EMBL:MPA41510.1}))
HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 436/650 (67.08%), Postives = 495/650 (76.15%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDE------PDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP+KLKE N EE +KSE R SSKHKS++N DD HRSK KSG + D D ER G SRHRSS R+ E+SER R RS+R HKD + R+++ GK +DRD+D+E+ ++++D +R R + +++K++ +E+ +RS+SR ER DE DRE+ RD E +ERE E +E D RR KEK+EEV EPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYD+MSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS AGG GG I PYSGGARRLYVGNLH NI+EDQLRQVFE FG VELVQLP D TG+ KG+GFVQFARLEDARAA+SLNGQLEI G++IKVSA+TDQ G+QDVGAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SSI LG P V++ G P T + G A VS LV PL Q VP LAGL AAG SVP V VPS D +GVPSECLLLKNMFDP SE EPDFDLDIK+DVQEE SK+G LKHIYVDKNTAGFVYLRF+NT++A+SAQRALHGRWFAGKMITATFM+PQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPQKLKETANGGEEPIKSEKNRSR-SSKHKSDENNDDFDHRSKHAKSGYQSFDRDGER-----------------------------------GLSRHRSSPREGERSERERHRSSRGHKDWD----REQRNGKERDRDRDKEKDGERDRDRDRRDRDREYGRERDKEREQEKEQPRRSRSRSERHGDERDGEKSQDRERSRDMEYKERESGREFRERDRESRRYKEKKEEVAEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDSMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGAGGLIGPYSGGARRLYVGNLHSNIKEDQLRQVFEPFGIVELVQLPTDPETGHCKGFGFVQFARLEDARAAQSLNGQLEIGGQSIKVSAVTDQTGLQDVGANAGDFDDDEGGGLSLNARSRALLMQKLDRSGTGSSITGSLGTPVVNSPGLVLPTTPILGAAPAVSPLVAPLVQPSVPALAGLPAAGLSVPAVTVPSVDTIGVPSECLLLKNMFDPKSEMEPDFDLDIKDDVQEECSKFGPLKHIYVDKNTAGFVYLRFENTQSAISAQRALHGRWFAGKMITATFMIPQNYEAKFPDSR 610
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BX02 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546122.1}))
HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 424/653 (64.93%), Postives = 482/653 (73.81%), Query Frame = 0
Match: A0A5J5BX02 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546122.1}))
HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 424/653 (64.93%), Postives = 482/653 (73.81%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRER---------GADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP+K E N EE +KSE + +SSKHKS+ N D HRS+ KSG E D D ER V SRHRSS RD E+SER R RS+REH+DR R+++ GK +DRD+DRE+ G + E R + + + + + + ER ++ DRE+ RD+E +ERE+E E +E D RR KEK+EEV EPEVDPERDQRTVFAYQICLKADER VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS AGG GG I PYSGGARRLYVGNLH + +EDQLRQVFE FG+VELVQLP DQ TG KG+GFVQFARLEDARAA+SL+GQLEIAG +IK+SAITDQAG+QDVGAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SSI LG P V++ G P + G A VS LV PLAQ VP LAGL AAG S+P V VPS D +GVPSECLLLKNMFDP SE+EPDFDLDIK +VQ+E SK+GTLKHIYVDKNTAGFVYLRF+NT++A+ +QRALHGRW+AGKMITATFMLPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENSEPQKSNETANGIEEPIKSEEKDWSRSSKHKSDDNDYDFDHRSRHPKSGFESFDIDGERDV-----------------------------------SRHRSSPRDGERSERERHRSSREHRDRN----REQRNGKERDRDRDREKTERGTPTGTGKTEIVIVNMEGRGIGERERERSRRSRSHSERHQGERDGERSQEAQDRERSRDREYKEREREREFRERDRESRRYKEKKEEVAEPEVDPERDQRTVFAYQICLKADERYVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGSGGLIGPYSGGARRLYVGNLHSHFKEDQLRQVFEPFGNVELVQLPTDQETGLCKGFGFVQFARLEDARAAQSLDGQLEIAGHSIKISAITDQAGLQDVGANAGDFDDDEGGGLSLNARSRALLMQKLDRSGTASSITGSLGTPVVNSPGLVLPSAPILGAAPAVSPLVAPLAQTSVPALAGLSAAGLSIPAVTVPSVDTIGVPSECLLLKNMFDPESETEPDFDLDIKGEVQDECSKFGTLKHIYVDKNTAGFVYLRFENTQSAIGSQRALHGRWYAGKMITATFMLPQNYEAKFPDSR 614
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6Y7 ((RNA-binding protein like {ECO:0000313|EMBL:PSS21761.1}))
HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0
Identity = 428/653 (65.54%), Postives = 500/653 (76.57%), Query Frame = 0
Match: A0A2R6R6Y7 ((RNA-binding protein like {ECO:0000313|EMBL:PSS21761.1}))
HSP 1 Score: 735.332 bits (1897), Expect = 0.000e+0
Identity = 428/653 (65.54%), Postives = 500/653 (76.57%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKD------NDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTS---AAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE +EP+KLKE ++ EET+KS E +SSKHKSEKN DD +HRSKR KSGD+ RDRE E+GSSRHRSS RD E+S+R R RS+REH+DR+K++ R+E+ GK + RD+DR++ +++D E+E + N+KE D+ + R RS S R++ + +R + R+ + RE E+E E +E D RR KEK+EEV EPE DPERDQRTVFAYQI LKADERDVY+FFSRAGKVRDVRLIMDRNSRRSKGVGYIEF+DAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS A GG I PYSGG RRLYVGNLH N++EDQLRQVFE FG+VELVQLP D TGN KG+GFVQFARLEDARAA+SLNGQLEIAGR IKVSA+TDQ GMQDVG N GDFDDDEGGGL+LNARSRA+LMQKLDRSG S+ LG P V++ G + P T + G A +VS LV+PL QA VP LAGL AG +VP V VPS DI+GVPSECLLLKNMFDP E+EPDFDLDIKEDVQ+E SK+G+LKHIYV+KN+ GFVYLRF+NT+AA+SAQRALHGRWFAGKMITATFM+PQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENLEPQKLKESLDVGEETLKSGDKESIRSSKHKSEKNDDDLNHRSKRSKSGDD------------------------------SRDREI-----ERGSSRHRSSPRDGERSDRDRPRSSREHRDRDKERDREERNGKDRHRDRDRDKERVRDQDREKESDRDRNRRERDHDNEKEIDREREQSRRSRSHSERRREEPDRERSRDREYKEREMEREREHRERDRESRRHKEKKEEVAEPEADPERDQRTVFAYQISLKADERDVYDFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFFDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSAAAVAAAAGGLIGPYSGGVRRLYVGNLHLNMKEDQLRQVFEPFGTVELVQLPSDPETGNCKGFGFVQFARLEDARAAQSLNGQLEIAGRVIKVSAVTDQPGMQDVGTNAGDFDDDEGGGLALNARSRALLMQKLDRSGFAPSVAGPLGNPVVNSPGLALPTTPILGAAPSVSPLVSPLVQASVPALAGLPGAGLTVPPVAVPSVDILGVPSECLLLKNMFDPKLETEPDFDLDIKEDVQDECSKFGSLKHIYVEKNSDGFVYLRFENTQAAISAQRALHGRWFAGKMITATFMVPQNYEAKFPDSR 618
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MD30 ((Uncharacterized protein {ECO:0000313|EMBL:TQD96339.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 417/645 (64.65%), Postives = 480/645 (74.42%), Query Frame = 0
Match: A0A540MD30 ((Uncharacterized protein {ECO:0000313|EMBL:TQD96339.1}))
HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 417/645 (64.65%), Postives = 480/645 (74.42%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G ++ SKR KSGDE RER D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EKDK R S+ + D +RE+ R+ E +ER+KE++ +E + RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SI LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +ESEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHEEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKDKERSRRSRSHSERH---RSDRDERERSREVEHKERDKEKDLREREKENRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAESEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B045 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535974.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 433/679 (63.77%), Postives = 500/679 (73.64%), Query Frame = 0
Match: A0A5J5B045 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535974.1}))
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 433/679 (63.77%), Postives = 500/679 (73.64%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGK---------------DRDQDRER---------GADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQK----------DEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIV-PYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSILGI---PGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP+KLKE VN EE VK E + +SS+HK++ N D H+SK +SGDE RDR DRE+GSSRHRSS RD E+SER R RS+REH+DR++D+ R+E+ GK + +RD+DRER + +RE+ ++ DKEKD+ + + E + DE DRE+ RD+E REREK+ E +E D RR KEK+EEVVEPEVDPERDQRTVFAYQICLKADERDVY+FFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS A G GGG++ PYSGGARRLYVGNLH+NI+EDQLRQVFE FG+VELVQLP D TG+ KG+GF+QFARLEDARAA+SLNGQLEIAGR+IKVSA+TDQ GMQD+GAN GD DDDEGGGLSLNARSRA+LMQKLDRSGT SSI G P VS+ G + P + G AS VS LV PL Q VP L GL AG S+P++ VPS D VGVPSECLLLKNMFDP E+EPDFDLDIKEDVQ+E SK+G LKHIYVDKN++GFVYLRF+NT++A++AQRALHGRWFAGKMITATF LPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPQKLKETVNGGEEHVKREDKDRSRSSRHKNDDNFD---HQSKLERSGDE------------------------------SRDR-----DRERGSSRHRSSPRDGERSERERHRSSREHRDRDRDRDREERNGKDRERDHDRDRREFDREYERDRDRERDPLRRSGSHSERHRDERDRERSRDREHRDKEKDRELRERDRESREREREPSRRSRSHSERHRDEQDRERSRDREYREREKDRELRERDRESRRYKEKKEEVVEPEVDPERDQRTVFAYQICLKADERDVYDFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAVGAGGGLIGPYSGGARRLYVGNLHFNIKEDQLRQVFEPFGTVELVQLPTDPETGHCKGFGFIQFARLEDARAAQSLNGQLEIAGRSIKVSAVTDQTGMQDIGANAGDLDDDEGGGLSLNARSRALLMQKLDRSGTASSITGSLVNPVVSSPGLTLPTAPILGAASAVSPLVAPLVQPSVPALVGLPGAGLSIPSITVPSIDTVGVPSECLLLKNMFDPKLETEPDFDLDIKEDVQDECSKFGMLKHIYVDKNSSGFVYLRFENTQSAINAQRALHGRWFAGKMITATFQLPQNYEAKFPDSR 641
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5HCG7 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2620834.1}))
HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 411/649 (63.33%), Postives = 472/649 (72.73%), Query Frame = 0
Match: A0A5N5HCG7 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2620834.1}))
HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0
Identity = 411/649 (63.33%), Postives = 472/649 (72.73%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEP----DREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G D+ SKR KSGDE RER D RE+GSS HRS SRD EK R RS+R+H+ RE + + GK +DR++D+ER +++D R +D +KEK++ + +++ +EK ++K+LREREKE RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED +RQVF +FG VELVQLP D+ T N KG+GFVQFARLEDAR A SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGL+LNARSRA+LMQKLDRSGT SI LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +ESEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHDEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSHHRSQSRDREKD---RHRSSRDHRGREDREREERN-GKERDRERDKERDPGRDRDRRERDREGDRDREKEKERLRQSRSHSERRRSDRDERERSREVEHKEKDKEKDLREREKEN---------RRHKDKKEEGTEPESDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHTNIKEDDIRQVFGAFGPVELVQLPHDE-TNNCKGFGFVQFARLEDARNALSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLALNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAESEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5IAW4 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2636253.1}))
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 413/645 (64.03%), Postives = 477/645 (73.95%), Query Frame = 0
Match: A0A5N5IAW4 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2636253.1}))
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 413/645 (64.03%), Postives = 477/645 (73.95%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G D+ SKR KSGDE RER D RE+GSS HRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EK+K R S+ + D +RE+ R+ E +ER+KE++ +E + RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGL+LNARSRA+LMQKLDRSGT SI LG P V++ G S P + G A V SLV P+A +P AGL AG +P +PS D +GVPSECLLLKNMFDP +ESEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHDEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSHHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKEKERSRRSRSHSERH---RSDRDERERSREVEHKERDKEKDLREREKENRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLALNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVCSLVPPIAS--IPGFAGLGVAGLQIPAATLPSVDTIGVPSECLLLKNMFDPTAESEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4ADL6 ((RNA-binding protein 39 isoform X1 {ECO:0000313|RefSeq:XP_015893284.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 411/648 (63.43%), Postives = 485/648 (74.85%), Query Frame = 0
Match: A0A6P4ADL6 ((RNA-binding protein 39 isoform X1 {ECO:0000313|RefSeq:XP_015893284.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 411/648 (63.43%), Postives = 485/648 (74.85%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEP-EKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDRE-KDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPL-AGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP +K KE N +E VKS G + R +SSKHK++ ++ HR KR K D+ R H R RE GSSRHRS SRD ER R +S+REH+DRE ++K R+E+ G+ +D+++DR+R +++++ R K+ +KEKD+ R+RS+RS S ER + + + + RER+KE+E +E D RR KEK++E EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTT+ A G G I PYSGGARRLYVGNLH NI+E+ LRQVF +FG VELVQLPLD+ G KG+GFVQF+RLEDAR A SLNGQLEI GR IKVSA+TDQAGMQD+G N GDFDDD+GGGLSLNARSRA+LMQKLDRSGT+SSI LG P VS+ G + + G A +S LV PL APVPP+ AGL AG VPT +VPS D +GVPSECLLLKNMFDP E+EP+FDLDIKEDVQ+E SK+G LKHIYVDKN+ GFVYLRF+NT+A+++AQRALHGRWFAGKMITAT+MLPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPLQKAKETANGSDEVVKSSGEKDRSRSSKHKNDAKDNEGEHRPKRSKI--------------DELREHNRR--------------------RESGSSRHRSQSRD---GERERHKSSREHRDREDREKDREERNGRDRDKEKDRDRDRERDRERRERDREGDKEREKEKDREMERDRSRRSLSHSERHRSDREERERSRDRDRERDKEKELRERDKESRRHKEKKDEATEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVAAGTSGLIGPYSGGARRLYVGNLHSNIKEEDLRQVFGAFGPVELVQLPLDE-AGQCKGFGFVQFSRLEDARNALSLNGQLEIGGRTIKVSAVTDQAGMQDLGVNTGDFDDDDGGGLSLNARSRALLMQKLDRSGTSSSIAGSLGTP-VSSTGLALSTAPILGAAPVISPLVAPL--APVPPVFAGLGGAGLQVPTASVPSIDTIGVPSECLLLKNMFDPALETEPNFDLDIKEDVQDECSKFGNLKHIYVDKNSVGFVYLRFENTQASMAAQRALHGRWFAGKMITATYMLPQNYEAQFPDSR 607
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5FFD7 ((RNA-binding protein 39-like {ECO:0000313|EMBL:KAB2600521.1}))
HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 416/650 (64.00%), Postives = 475/650 (73.08%), Query Frame = 0
Match: A0A5N5FFD7 ((RNA-binding protein 39-like {ECO:0000313|EMBL:KAB2600521.1}))
HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 416/650 (64.00%), Postives = 475/650 (73.08%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDK------GSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI--LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 641
MDFDEY+YLEKTVE EP K KE VN EE KS G +GR +SS+HK ++ G D+ SKR KSGDE ERG+ D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+R+++R++ D ++D +R +R + D D+EKDK S ER + + ER ++ +EK ++K+LREREKE RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED +RQVF +FG VELVQLP D+ T N KG+GFVQFARLEDAR A SLNGQLEIAGR IKVSA+TDQAGMQD+G N GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SSI LG V++ G S P + G A +SSLV P+ VP AGL AG +PT +PS D VGVPSECLLLKNMFDP +ESEPDFDLDIK+DVQEE SKYG LKHIYVDKNTAG VYLRF+ EAA++A+ LHGRWFAGKMI ATFMLPQ YE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETVNGGEEASKS-GEKGRSRSSRHKGDEKGHDEERHSKRSKSGDES-----------HERGN--------------------DRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERNRERDKERDPDRDRDRRERDREGDRDREKDKERLRQSRSHSERRRSDRDERERSREVEHKEKDKEKDLREREKEN---------RRHKDKKEEGTEPESDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHTNIKEDDIRQVFGAFGPVELVQLPHDE-TNNCKGFGFVQFARLEDARNALSLNGQLEIAGRVIKVSAVTDQAGMQDLGVNAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTASSIGPLGTTAVNSAGVSLPMAPILGAAPGISSLVPPITS--VPGFAGLGIAGLQIPTATLPSVDTVGVPSECLLLKNMFDPTAESEPDFDLDIKDDVQEECSKYGKLKHIYVDKNTAGHVYLRFETIEAALNARHVLHGRWFAGKMIEATFMLPQTYEAKFPDSR 600
BLAST of XM_017374416.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498JRX8 ((Uncharacterized protein {ECO:0000313|EMBL:RXH97677.1}))
HSP 1 Score: 693.345 bits (1788), Expect = 0.000e+0
Identity = 411/659 (62.37%), Postives = 470/659 (71.32%), Query Frame = 0
Match: A0A498JRX8 ((Uncharacterized protein {ECO:0000313|EMBL:RXH97677.1}))
HSP 1 Score: 693.345 bits (1788), Expect = 0.000e+0
Identity = 411/659 (62.37%), Postives = 470/659 (71.32%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRP------ERQKDEPDREKHRDKELREREKEEESKEPDL----------MIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSI---LGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSESEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPD 639
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G ++ SKR KSGDE RER D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EKDK R S+ ER ++ +E+ ++K+LREREKE + +RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SI LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +ESEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI AT P SR D
Sbjct: 29 MDFDEYDYLEKTVENPEPPKSKETANGGEETMKS-GEKGRSRSSKHKGDEKGHEEERHSKRSKSGDE----SRERD---------------------------NDRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKDKERSRRSRSHSERHRSDRDERERSREVEHKEREKEKDLREREKENRYARAIIRWSFWQLGQAQLRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTAPSIAGTLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAESEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATCPRPTRLNSRKAD 646
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZBQ0 | E-Value: 0.000e+0, PID: 67.08 | (Putative RNA-binding protein 39 {ECO:0000313|EMBL... [more] |
| A0A5J5BX02 | E-Value: 0.000e+0, PID: 64.93 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A2R6R6Y7 | E-Value: 0.000e+0, PID: 65.54 | (RNA-binding protein like {ECO:0000313|EMBL:PSS217... [more] |
| A0A540MD30 | E-Value: 0.000e+0, PID: 64.65 | (Uncharacterized protein {ECO:0000313|EMBL:TQD9633... [more] |
| A0A5J5B045 | E-Value: 0.000e+0, PID: 63.77 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8535... [more] |
| A0A5N5HCG7 | E-Value: 0.000e+0, PID: 63.33 | (RNA-binding protein 39 {ECO:0000313|EMBL:KAB26208... [more] |
| A0A5N5IAW4 | E-Value: 0.000e+0, PID: 64.03 | (RNA-binding protein 39 {ECO:0000313|EMBL:KAB26362... [more] |
| A0A6P4ADL6 | E-Value: 0.000e+0, PID: 63.43 | (RNA-binding protein 39 isoform X1 {ECO:0000313|Re... [more] |
| A0A5N5FFD7 | E-Value: 0.000e+0, PID: 64.00 | (RNA-binding protein 39-like {ECO:0000313|EMBL:KAB... [more] |
| A0A498JRX8 | E-Value: 0.000e+0, PID: 62.37 | (Uncharacterized protein {ECO:0000313|EMBL:RXH9767... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |