Resource Type:
Polypeptide
Name:
XM_017373649.1
Identifier:
XM_017373649.1-protein
Sequence:
MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKLFSRATALSLSH
RSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILA
GCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPR
LGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSS
TGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVG
SAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR
Sequence Length:
290
Sequence Checksum:
dd3616531bc68b4b066ce314bb92578d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017373649.1, derives from mRNA, XM_017373649.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B091 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535970.1}))
HSP 1 Score: 417.542 bits (1072), Expect = 9.003e-145
Identity = 216/297 (72.73%), Postives = 245/297 (82.49%), Query Frame = 0
Match: A0A5J5B091 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535970.1}))
HSP 1 Score: 417.542 bits (1072), Expect = 9.003e-145
Identity = 216/297 (72.73%), Postives = 245/297 (82.49%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRD---SPHFRRPHLPARRLKNTHLDKLFS---RATALSL-SHRSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MAT LSVRP+RAI D SP RP P RR + + K+ R A+S S R+L VLLA SRADDSAP EMSVENAL+LLGV EGASFDDILRAK SI+A CKDD Q++IA+VEAAYDMLLMQSF++RRAGKV+NNSIRYADVKPV+AP +GS P+WL+AT+KN PVS+E+PS D+GIQAGVYGALM LTY NG S S GLY+GADV GL++A+SF ASLYFMTKKNVKLGKAT+ITIGGL AGAVVGSAVENWLQVDIVPFLG+HSPA VVSE I+FSQFLVSLYLR
Sbjct: 75 MATALSVRPSRAILGHDPAGSP-LNRP--PVRRSEPAQIGKIIKNDRRWGAVSAPSRRTLSKVLLAGSRADDSAPFEMSVENALRLLGVSEGASFDDILRAKNSIIAACKDD-QEAIAQVEAAYDMLLMQSFTRRRAGKVVNNSIRYADVKPVSAPEIGSLPRWLQATIKNPPVSVETPSIADIGIQAGVYGALMGLTYVNGTSAPSAGLYAGADVPGLILATSFGASLYFMTKKNVKLGKATVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEVILFSQFLVSLYLR 367
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z549 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like {ECO:0000313|RefSeq:XP_016459474.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 1.705e-138
Identity = 207/297 (69.70%), Postives = 241/297 (81.14%), Query Frame = 0
Match: A0A1S3Z549 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like {ECO:0000313|RefSeq:XP_016459474.1}))
HSP 1 Score: 399.053 bits (1024), Expect = 1.705e-138
Identity = 207/297 (69.70%), Postives = 241/297 (81.14%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKL----FSRATALSL-SH--RSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MAT+LSVRPNR I C DS RP RR + HL K+ SR L+L SH R L + A SRADDSAP EMSVENALKLLGV EGASFDDILRAKKSI++ CKDD D+IA+VEAAYDMLLMQS SQRRAGKV+++S+R+ADVK A +GS PKWL+ T+KN+PVS+E+P+ +LG+QAGVYGALM LTY NGAST S G+ GADV GL++A+SF A+LYFMTKKNVKLGKA++ITIGGL AGAVVGSAVENWLQVDIVPFLG+H+PATVVSEFI+FSQF+VSLYLR
Sbjct: 1 MATSLSVRPNRTIICSDSAGSVRPTPIRRRPASAHLPKIPNSDCSRRRRLALISHHRRKLDTTVQAGSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSIISSCKDD-ADTIAQVEAAYDMLLMQSLSQRRAGKVVDSSVRFADVKSANASGIGSMPKWLQTTVKNAPVSVEAPAARELGVQAGVYGALMVLTYVNGASTPS-GVSYGADVPGLILATSFGATLYFMTKKNVKLGKASVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHTPATVVSEFILFSQFMVSLYLR 295
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AC47 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like {ECO:0000313|RefSeq:XP_016474189.1}))
HSP 1 Score: 396.356 bits (1017), Expect = 2.282e-137
Identity = 206/297 (69.36%), Postives = 240/297 (80.81%), Query Frame = 0
Match: A0A1S4AC47 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like {ECO:0000313|RefSeq:XP_016474189.1}))
HSP 1 Score: 396.356 bits (1017), Expect = 2.282e-137
Identity = 206/297 (69.36%), Postives = 240/297 (80.81%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKL----FSRATALSL-SH--RSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MAT+LSVRPNR I C DS RP RR + HL K+ SR L+L SH R L + A SRADDSAP EMSVENALKLLGV EGASFDDILRAKKSI++ CK D D+IA+VEAAYDMLLMQS SQRRAGKV+++S+R+ADVK A +GS PKWL+ T+KN+PVS+E+P+ +LG+QAGVYGALM LTY NGAST S G+ GADV GL++A+SF A+LYFMTKKNVKLGKA++ITIGGL AGAVVGSAVENWLQVDIVPFLG+H+PATVVSEFI+FSQF+VSLYLR
Sbjct: 1 MATSLSVRPNRTIICSDSAGSVRPTPIRRRPASAHLPKIPNSDCSRRRRLALISHHRRKLDTTVQAGSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSIISSCKGD-ADTIAQVEAAYDMLLMQSLSQRRAGKVVDSSVRFADVKSANASGIGSMPKWLQTTVKNAPVSVEAPAARELGVQAGVYGALMVLTYVNGASTPS-GVSYGADVPGLILATSFGATLYFMTKKNVKLGKASVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHTPATVVSEFILFSQFMVSLYLR 295
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U4B0 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_011088631.1}))
HSP 1 Score: 392.889 bits (1008), Expect = 3.523e-136
Identity = 201/291 (69.07%), Postives = 236/291 (81.10%), Query Frame = 0
Match: A0A6I9U4B0 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_011088631.1}))
HSP 1 Score: 392.889 bits (1008), Expect = 3.523e-136
Identity = 201/291 (69.07%), Postives = 236/291 (81.10%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKLFSRAT-ALSLSHRSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MAT LSVRP RAI D H PA + K+ R + S R L L A SRADDSAP EMSVENALK+LGV EGASFDDILRAK SI+A CKDD+Q +IA+VEAAYDMLLMQS S+RRAGKV+N+SIRYADVK + +P++GS PKWL+ ++K SP+S+E+PST++LG+QAGVYGALM LTYANGAS SST Y G+DV GL++A+SF ASLYFMTKKN+KLGKAT+ITIGGL AGAVVGSAVENWLQVDIVPF+G+++PATVVSEFI+FSQFLVSLYLR
Sbjct: 1 MATALSVRPTRAISGSDRLRPASFHRPAPE----PIVKVGRRGPWGVLFSRRVLAAPLQAGSRADDSAPFEMSVENALKVLGVSEGASFDDILRAKNSIIASCKDDEQ-TIAQVEAAYDMLLMQSLSRRRAGKVVNSSIRYADVKSINSPKMGSMPKWLQTSVKKSPISVEAPSTSELGVQAGVYGALMVLTYANGASPSSTIPYGGSDVPGLILATSFGASLYFMTKKNIKLGKATVITIGGLVAGAVVGSAVENWLQVDIVPFVGINTPATVVSEFILFSQFLVSLYLR 286
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KAQ4 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33296.1}))
HSP 1 Score: 391.734 bits (1005), Expect = 1.021e-135
Identity = 203/292 (69.52%), Postives = 234/292 (80.14%), Query Frame = 0
Match: A0A067KAQ4 ((Uncharacterized protein {ECO:0000313|EMBL:KDP33296.1}))
HSP 1 Score: 391.734 bits (1005), Expect = 1.021e-135
Identity = 203/292 (69.52%), Postives = 234/292 (80.14%), Query Frame = 0
Query: 2 ATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKLFS---RATALSLSHRSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
A TLSVRPNR SP F RP P+ + + L + R T + L RS VG A SRADDSAP EMSVENALKLLGV E ASFDDILRAKKSILA CKDD QD+IA+VEAAYDMLLM+S +QRRAGKV+N++IRYADVKP+ P +GS +WL+A+MKN+P+S+E+PST DLGIQAGVYGA+M LTY NGASTS Y GADV GL++A+SF ASLYFMTKKNVKLGKAT+I +GGL AGAVVGSAVE+WLQVDIVPFLG+HSPA VVSEFI+FSQ L+SLYLR
Sbjct: 3 AATLSVRPNR--LSSGSP-FPRP--PSSATTTSQIKSLKNDPWRVTIVPL-RRSFVGSARAGSRADDSAPFEMSVENALKLLGVSENASFDDILRAKKSILATCKDD-QDAIAQVEAAYDMLLMRSLTQRRAGKVVNSAIRYADVKPINGPGMGSVTQWLQASMKNTPISVETPSTGDLGIQAGVYGAMMVLTYVNGASTSPVAPYGGADVPGLILATSFGASLYFMTKKNVKLGKATVIALGGLVAGAVVGSAVESWLQVDIVPFLGLHSPAAVVSEFILFSQLLISLYLR 287
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9S5K0 ((Uncharacterized protein {ECO:0000313|EMBL:EEF41125.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 1.676e-135
Identity = 202/294 (68.71%), Postives = 232/294 (78.91%), Query Frame = 0
Match: B9S5K0 ((Uncharacterized protein {ECO:0000313|EMBL:EEF41125.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 1.676e-135
Identity = 202/294 (68.71%), Postives = 232/294 (78.91%), Query Frame = 0
Query: 2 ATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKLFSRATALSL--SHRSLVGV---LLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
A LSVRPN +S R P P +T L + L++ S R G ASSRADDSAP EMSVENALKLLGV EGASFDDILRAKKSILA CKDD Q+++A+VEAAYDMLLMQS +QRRAGKV N+ IRYADVKP+ P +GS P+WL+ATMK +PVS+E+PST DLGI+AGVYGA+M LTY NGAS+ S Y+GADV GL++A++F ASLYF+TKKNVKLGKATLIT+GGLAAGAVVGSAVENWLQVDIVPFLG+HSPA VVSEFI+FSQFLVSLYLR
Sbjct: 3 AAPLSVRPNS--LSSNSAFPRPPTAPTSTTISTQLQSIKKEPWRLTILPSRRYFSGKGARARASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSILASCKDD-QEAVAQVEAAYDMLLMQSLTQRRAGKVANSDIRYADVKPINGPGMGSVPQWLQATMKKTPVSVETPSTGDLGIRAGVYGAMMVLTYVNGASSISVAPYAGADVPGLILATTFGASLYFLTKKNVKLGKATLITLGGLAAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR 293
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WUC2 ((uncharacterized protein LOC104232106 {ECO:0000313|RefSeq:XP_009783507.1}))
HSP 1 Score: 390.963 bits (1003), Expect = 2.524e-135
Identity = 205/297 (69.02%), Postives = 239/297 (80.47%), Query Frame = 0
Match: A0A1U7WUC2 ((uncharacterized protein LOC104232106 {ECO:0000313|RefSeq:XP_009783507.1}))
HSP 1 Score: 390.963 bits (1003), Expect = 2.524e-135
Identity = 205/297 (69.02%), Postives = 239/297 (80.47%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHLDKL----FSRATALSL-SH--RSLVGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MAT+LSVRPNR I DS RP RR + HL K+ SR L+L SH R L + A SRADDSAP EMSVENALKLLGV EGASFDDILRAKKSI++ CK D D+IA+VEAAYDMLLMQS SQRRAGKV+++S+R+ADVK A +GS PKWL+ T+KN+PVS+E+P+ +LG+QAGVYGALM LTY NGAST S G+ GADV GL++A+SF A+LYFMTKKNVKLGKA++ITIGGL AGAVVGSAVENWLQVDIVPFLG+H+PATVVSEFI+FSQF+VSLYLR
Sbjct: 1 MATSLSVRPNRTIIGSDSAGSVRPTPIRRRPASAHLPKIPNSDCSRRRRLALISHHRRKLDTTVQAGSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSIISSCKGD-ADTIAQVEAAYDMLLMQSLSQRRAGKVVDSSVRFADVKSANASGIGSMPKWLQTTVKNAPVSVEAPAARELGVQAGVYGALMVLTYVNGASTPS-GVSYGADVPGLILATSFGATLYFMTKKNVKLGKASVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHTPATVVSEFILFSQFMVSLYLR 295
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834XDV4 ((Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic {ECO:0000313|EMBL:KAF7841318.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 8.876e-135
Identity = 211/297 (71.04%), Postives = 236/297 (79.46%), Query Frame = 0
Match: A0A834XDV4 ((Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic {ECO:0000313|EMBL:KAF7841318.1}))
HSP 1 Score: 391.349 bits (1004), Expect = 8.876e-135
Identity = 211/297 (71.04%), Postives = 236/297 (79.46%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRLKNTHL--DKLFSRATALSL--SHRSL---VGVLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MATTLSVRP+R SP P P RR+ NTHL + + + SL R+L V A SRADDSAP EMSVENALKLLGV EGASFDDILRAK SILA CKDD Q+SIA+VEAAYDMLLM+S +QR+AGKV+N+SIRYADVKPV P L S P+WL+ATMKNSPVSIE+PST+DLG+QAGVY ALM LTY NG ST+ Y+GADV GL++ASSF ASLYFMTKK VKLGKAT+ITIGGL AGAVVGSAVENWLQVDIVPF+G+HSPA VVSE II SQFLVSLYLR
Sbjct: 56 MATTLSVRPHRL-----SPGSAFPTPPVRRIHNTHLIGNSIANGPWQGSLFRCRRTLGRTVSSSPAGSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKNSILANCKDD-QESIAQVEAAYDMLLMRSLTQRQAGKVVNSSIRYADVKPVKPPGLRSTPQWLQATMKNSPVSIETPSTSDLGVQAGVYCALMGLTYINGVSTTPAP-YAGADVPGLILASSFGASLYFMTKKKVKLGKATVITIGGLIAGAVVGSAVENWLQVDIVPFMGLHSPAAVVSEIIILSQFLVSLYLR 345
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AAI0 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic {ECO:0000313|RefSeq:XP_015893245.1}))
HSP 1 Score: 389.037 bits (998), Expect = 1.778e-134
Identity = 205/304 (67.43%), Postives = 241/304 (79.28%), Query Frame = 0
Match: A0A6P4AAI0 ((protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic {ECO:0000313|RefSeq:XP_015893245.1}))
HSP 1 Score: 389.037 bits (998), Expect = 1.778e-134
Identity = 205/304 (67.43%), Postives = 241/304 (79.28%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPHFRRPHLPARRL-KNTHLDKLF------------SRATALSLSHRSLVGVLLASSRADDS-APSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
M+ TL+VRPNR SP P P RRL H+ KL SR L+ +++++V V+ A SRADDS AP EMSVENALKLLGV EGASF+DILRAK SILA CKDD +D+IA+VEAAYDMLLM+S +QRRAG+V+N+SIRYADVKPV +P +GS P+WL+ATMKN P+S+E+PS DLGIQAGVYGALM LTYANG ST+S Y+GADV GL++A SF ASLYFMTK+NVKLGKAT+IT+GGL AGAVVGSAVENWLQVDIVPFLG+HSPA VVSEF++FSQFLVSL LR
Sbjct: 1 MSATLAVRPNR--IAAGSPF---PQPPVRRLGPPAHIRKLSEKIKPWRGLIIPSRWRTLANNNKTMV-VVRAGSRADDSSAPYEMSVENALKLLGVSEGASFEDILRAKNSILATCKDD-KDTIAQVEAAYDMLLMRSLTQRRAGRVVNSSIRYADVKPVNSPGMGSMPRWLQATMKNPPISVETPSRGDLGIQAGVYGALMVLTYANGTSTTSAVPYAGADVPGLILAGSFGASLYFMTKRNVKLGKATIITVGGLVAGAVVGSAVENWLQVDIVPFLGLHSPAAVVSEFVLFSQFLVSLCLR 297
BLAST of XM_017373649.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IH65 ((Uncharacterized protein {ECO:0000313|EMBL:SPD23389.1}))
HSP 1 Score: 389.037 bits (998), Expect = 1.878e-134
Identity = 206/301 (68.44%), Postives = 240/301 (79.73%), Query Frame = 0
Match: A0A2N9IH65 ((Uncharacterized protein {ECO:0000313|EMBL:SPD23389.1}))
HSP 1 Score: 389.037 bits (998), Expect = 1.878e-134
Identity = 206/301 (68.44%), Postives = 240/301 (79.73%), Query Frame = 0
Query: 1 MATTLSVRPNRAIFCRDSPH----FRRP---HLPARRLKNTHLDKLFS--RATALSLSHRSLVG--VLLASSRADDSAPSEMSVENALKLLGVDEGASFDDILRAKKSILAGCKDDDQDSIAKVEAAYDMLLMQSFSQRRAGKVINNSIRYADVKPVAAPRLGSAPKWLEATMKNSPVSIESPSTTDLGIQAGVYGALMALTYANGASTSSTGLYSGADVSGLVVASSFAASLYFMTKKNVKLGKATLITIGGLAAGAVVGSAVENWLQVDIVPFLGVHSPATVVSEFIIFSQFLVSLYLR 290
MA TLSVRPNR F SP+ RRP H+ +RR NT ++ + + S LV V+ A SRADDSA EMSVENALKLLGV +GASFDDILRAK S+LA CKDD QD+IA+VEAAYDMLLM+S +QRRAGKV+N+ IRYADVKPV+ P +GS P WL++T+KNSP+S+E+PS+ DLGIQAGVYGAL+ LTYANG STSS Y+GADV GL++A SF ASLYFMTK+NVKLGKATLIT+GGL AGAVVGSAVENWLQVDIVPFLG+HSPA V+SEFI+FSQ LVSLYLR
Sbjct: 1 MAATLSVRPNR--FTAGSPYPRPASRRPSPAHI-SRRRPNTKKNQPWPWHSLSPFPSSRPVLVAAPVVQAGSRADDSASFEMSVENALKLLGVSDGASFDDILRAKNSVLATCKDD-QDAIAQVEAAYDMLLMRSLTQRRAGKVVNSGIRYADVKPVSPPGMGSMPPWLQSTVKNSPISVETPSSGDLGIQAGVYGALIVLTYANGTSTSSALPYAGADVPGLILAGSFGASLYFMTKRNVKLGKATLITLGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVISEFILFSQLLVSLYLR 297
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B091 | E-Value: 9.003e-145, PID: 72.73 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8535... [more] |
| A0A1S3Z549 | E-Value: 1.705e-138, PID: 69.70 | (protein CHAPERONE-LIKE PROTEIN OF POR1, chloropla... [more] |
| A0A1S4AC47 | E-Value: 2.282e-137, PID: 69.36 | (protein CHAPERONE-LIKE PROTEIN OF POR1, chloropla... [more] |
| A0A6I9U4B0 | E-Value: 3.523e-136, PID: 69.07 | (protein CHAPERONE-LIKE PROTEIN OF POR1, chloropla... [more] |
| A0A067KAQ4 | E-Value: 1.021e-135, PID: 69.52 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3329... [more] |
| B9S5K0 | E-Value: 1.676e-135, PID: 68.71 | (Uncharacterized protein {ECO:0000313|EMBL:EEF4112... [more] |
| A0A1U7WUC2 | E-Value: 2.524e-135, PID: 69.02 | (uncharacterized protein LOC104232106 {ECO:0000313... [more] |
| A0A834XDV4 | E-Value: 8.876e-135, PID: 71.04 | (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloropla... [more] |
| A0A6P4AAI0 | E-Value: 1.778e-134, PID: 67.43 | (protein CHAPERONE-LIKE PROTEIN OF POR1, chloropla... [more] |
| A0A2N9IH65 | E-Value: 1.878e-134, PID: 68.44 | (Uncharacterized protein {ECO:0000313|EMBL:SPD2338... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |