Resource Type:
Polypeptide
Name:
XM_017387618.1
Identifier:
XM_017387618.1-protein
Sequence:
MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYII
SAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWL
PITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFV
WQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLS
MGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILS
QLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKI
QKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSY
AIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINM
FVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCF
FVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWI
LGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP
Sequence Length:
532
Sequence Checksum:
457b21c17ef95bc8de912d3d89aeddb2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387618.1, derives from mRNA, XM_017387618.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BCM8 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 487/534 (91.20%), Postives = 514/534 (96.25%), Query Frame = 0
Match: A0A6L5BCM8 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 1009.98 bits (2610), Expect = 0.000e+0
Identity = 487/534 (91.20%), Postives = 514/534 (96.25%), Query Frame = 0
Query: 1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRF--LTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
MGHEV+LEL++STG TP VKS STPG SAPRTP+ KAPAPISIPSPYI+SAPASQAQTPS RG+RTP + TPRFLTPLGSPIRKALNFVKLDP+DAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAF+WQLYTLYLLVQLHEDF+KE+RYSRYMQLANAAFGEKLSK IALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTC TTPLTS EWYLVFTSAAV+LSQLPNLNSIAGISL+GA+TAVGYCTMIW+TSVAEGRIHGVSY+PTLSGS IQKIFDILN+VGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSY IILMCLFPLAIGGYWTYGQMIPANGGILT+LYLFHGQDTAKGLIGLINMFVI+NGLSTFQIYAMPMFDD+ESTY +R KKPCPWWLRVILRTLFGYFCFF+AVA+PFQGSFSGLIGGIYLPVTLAYPCFMW+IIKKPK+YSSVWWLNW+LGVLGVC+SVLLVAAG YVVIHTGVEGSFFKP
Sbjct: 1 MGHEVELELNSSTGATPVVKSADSTPGASAPRTPRLKAPAPISIPSPYIVSAPASQAQTPSGRGSRTPGWSRAMTPRFLTPLGSPIRKALNFVKLDPQDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFIWQLYTLYLLVQLHEDFDKEIRYSRYMQLANAAFGEKLSKFIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCDTTPLTSTEWYLVFTSAAVVLSQLPNLNSIAGISLIGAVTAVGYCTMIWLTSVAEGRIHGVSYDPTLSGSHIQKIFDILNSVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYTIILMCLFPLAIGGYWTYGQMIPANGGILTSLYLFHGQDTAKGLIGLINMFVIVNGLSTFQIYAMPMFDDLESTYTTRCKKPCPWWLRVILRTLFGYFCFFMAVAVPFQGSFSGLIGGIYLPVTLAYPCFMWVIIKKPKIYSSVWWLNWVLGVLGVCLSVLLVAAGTYVVIHTGVEGSFFKP 534
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218XGE4 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_031394993.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 353/526 (67.11%), Postives = 421/526 (80.04%), Query Frame = 0
Match: A0A218XGE4 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_031394993.1}))
HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 353/526 (67.11%), Postives = 421/526 (80.04%), Query Frame = 0
Query: 11 TSTGVTPEVKSEASTPGVSAP----RTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
S VTP + TP +SAP +P ++ I + P ++ TPR TPRF+TPLGSPIR+AL+ KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIGIQAL+LPVAFT+LGWTW II +TLAF+WQLYTLYLLVQLHE E +RYSRYMQLA+AAFGE+L+K++ALFPI YLS GTC LI+IGGS+ + FF ++C TCS LT +WYLVFTSAAVILSQLPNLNSIAG+SL+GAITAVGYCT+IW+ SV+EGR+ GVSYNP ++I ++FD+LN++GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMW+GVK +Y II +CLFPLAIGGYW YG MIP NGG+LTALY FHGQDTA+ L+GL +FVIIN +S+FQIYAMPMFDDMES + R+K+P PWWLRVILR +F Y CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL +K+PK+Y +WWLNW LGVLG+ +S +L+AAG YVVI TG++ SFFKP
Sbjct: 8 NSNPVTPRPAAVNLTPPISAPPSQYHSPSLSRSPLLTAGGDQIEAVPKTKTPKSITPKISTPRISLTPRFITPLGSPIRRALHLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGIQALILPVAFTFLGWTWGIICMTLAFIWQLYTLYLLVQLHESHENGMRYSRYMQLASAAFGERLAKLLALFPIMYLSGGTCVALIIIGGSTSKMFFDLLCAG-TCSAEHLTPVQWYLVFTSAAVILSQLPNLNSIAGVSLIGAITAVGYCTLIWVISVSEGRMPGVSYNPIRGSTEIARVFDLLNSLGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWRGVKFAYLIIALCLFPLAIGGYWAYGHMIPENGGMLTALYAFHGQDTAQSLLGLTALFVIINAVSSFQIYAMPMFDDMESKFTMRLKRPLPWWLRVILRAMFAYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKMKRPKMYGPMWWLNWFLGVLGMALSGILIAAGVYVVIDTGIKVSFFKP 532
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A833UL82 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5453839.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
Match: A0A833UL82 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5453839.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
Query: 29 SAPRTPKRK--APAPISIPSPYIISAPASQAQTPS--------------------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
SAP TP++ AP P + +P +S P SQ +PS + RTPR TPRF+TPLGSP+RKAL KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAFVWQLYTL+LLVQLHE E +RY RY+QL+ FG+KL K++A+FPI YLS GTC LI+IGGS+ ++F+QIVC P TCS PLTS EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TAV YCTMIW+ SVAEGR+ GVSYNP ++I+ IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVKVSY +I CLFPLAIGGYW YGQ IP NGG+LTALY FH QD ++ ++GL ++FVI+N +S+FQIYAMPMFDDMES Y R K+PCPWWLR + R +FGY CFFVAVA+PF GS +GLIGG+ LPVTLAYPCFMWL IKKPK+YS +WWLNW+LGVLG+ +S +L+AAG YVVI TG+E SFFKP
Sbjct: 25 SAPLTPRKGSVAPTPPLVSTP-PVSCPPSQFHSPSLSRSPLLHEEHAAEAPRNKTPKTPRTPRLSLTPRFITPLGSPMRKALRMTKLDPQDAWLPITESRNGNQYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFVWQLYTLWLLVQLHESTETGMRYCRYLQLSCVTFGDKLGKLLAMFPIMYLSGGTCVALIIIGGSTSKQFYQIVCGP-TCSQ-PLTSVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAVAYCTMIWVVSVAEGRLPGVSYNPVRGKTQIEHIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKVSYTMIAACLFPLAIGGYWAYGQKIPENGGMLTALYAFHSQDVSQSVLGLTSLFVIVNAVSSFQIYAMPMFDDMESKYTIRKKEPCPWWLRAVFRAMFGYGCFFVAVAIPFLGSLAGLIGGLALPVTLAYPCFMWLKIKKPKMYSGMWWLNWVLGVLGMGLSGILIAAGVYVVIDTGIEASFFKP 547
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DGB2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_018806190.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
Match: A0A2I4DGB2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_018806190.1}))
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 356/526 (67.68%), Postives = 418/526 (79.47%), Query Frame = 0
Query: 29 SAPRTPKRK--APAPISIPSPYIISAPASQAQTPS--------------------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
SAP TP++ AP P + +P +S P SQ +PS + RTPR TPRF+TPLGSP+RKAL KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAFVWQLYTL+LLVQLHE E +RY RY+QL+ FG+KL K++A+FPI YLS GTC LI+IGGS+ ++F+QIVC P TCS PLTS EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TAV YCTMIW+ SVAEGR+ GVSYNP ++I+ IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVKVSY +I CLFPLAIGGYW YGQ IP NGG+LTALY FH QD ++ ++GL ++FVI+N +S+FQIYAMPMFDDMES Y R K+PCPWWLR + R +FGY CFFVAVA+PF GS +GLIGG+ LPVTLAYPCFMWL IKKPK+YS +WWLNW+LGVLG+ +S +L+AAG YVVI TG+E SFFKP
Sbjct: 9 SAPLTPRKGSVAPTPPLVSTP-PVSCPPSQFHSPSLSRSPLLHEEHAAEAPRNKTPKTPRTPRLSLTPRFITPLGSPMRKALRMTKLDPQDAWLPITESRNGNQYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFVWQLYTLWLLVQLHESTETGMRYCRYLQLSCVTFGDKLGKLLAMFPIMYLSGGTCVALIIIGGSTSKQFYQIVCGP-TCSQ-PLTSVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAVAYCTMIWVVSVAEGRLPGVSYNPVRGKTQIEHIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKVSYTMIAACLFPLAIGGYWAYGQKIPENGGMLTALYAFHSQDVSQSVLGLTSLFVIVNAVSSFQIYAMPMFDDMESKYTIRKKEPCPWWLRAVFRAMFGYGCFFVAVAIPFLGSLAGLIGGLALPVTLAYPCFMWLKIKKPKMYSGMWWLNWVLGVLGMGLSGILIAAGVYVVIDTGIEASFFKP 531
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I2D7 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 353/522 (67.62%), Postives = 420/522 (80.46%), Query Frame = 0
Match: F6I2D7 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 353/522 (67.62%), Postives = 420/522 (80.46%), Query Frame = 0
Query: 11 TSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
+ST +TP + A TP VS P + + +P+ P + + A Q++TP A +RTPR TPRF+TPLGSP+R+ L KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE E +RYSRY+QL NA FGE+L ++ALFPI YLS GTC LI+IGGS+ + F+QIVC TC+ PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TA+GYCT IW+ SVAEGR+ GVSYNP G+ I+ IF +LNA+GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMWKGVK SY II + LFPLAIGGYW YG +IP+NGGILTALY+FH QD ++ ++GL ++F+I+N +S+FQIY MPMFD MES Y +RMKKPCPWWLR + R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL IKKPK YS WWLNW LGVLG+ +S +L+AAG YVVI TG+E FF P
Sbjct: 8 SSTPITPRPATTAPTPPVSCPPS-QFHSPSLTRSPLLHTDNEEAPQSKTPKA--SRTPRLSLTPRFITPLGSPMRRVLRLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIINLTLAFIWQLYTLWLLVQLHESTETGMRYSRYLQLFNATFGERLGNLLALFPIMYLSGGTCVALIIIGGSTSKTFYQIVCG-ATCTKVPLTTVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAIGYCTSIWVVSVAEGRLPGVSYNPVKEGTDIEHIFSVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWKGVKFSYTIIALGLFPLAIGGYWAYGHLIPSNGGILTALYVFHSQDVSQFVLGLTSLFIIVNAVSSFQIYGMPMFDFMESKYTTRMKKPCPWWLRSLFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIKKPKTYSPTWWLNWGLGVLGMGLSSVLIAAGIYVVIDTGIEAKFFHP 525
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TUT2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_011088674.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 353/539 (65.49%), Postives = 422/539 (78.29%), Query Frame = 0
Match: A0A6I9TUT2 ((lysine histidine transporter-like 8 {ECO:0000313|RefSeq:XP_011088674.1}))
HSP 1 Score: 726.087 bits (1873), Expect = 0.000e+0
Identity = 353/539 (65.49%), Postives = 422/539 (78.29%), Query Frame = 0
Query: 6 DLELSTSTGVTPEVKSEASTPGVSAPRTPKRK--APAPISIPSPYIISAPASQAQTPS----------ARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
D++ +S +TP S + SAP TP+ AP P +P I+S P SQ +PS +TPR + TPRF+TPLGSP+RKA+ KLDP+DAWLPIT+SRNGNAYYAA+HTL SGIGIQALVLPVAFT LGWTW II LTLAF+WQLYTLYLLVQLHE E VRYSRYMQLA+A FGEKLSK + FPI YLS GTC LI+IGGS+ + F+Q +C + PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+G +TAVGYCT +WI SV+EGR+ VSYNP + ++I +IFD+LNA+GIIAFAFRGHNL+LEIQATMPSSEK PS +PMW+GVK +Y I+ MCLFP+AIGGYW YG MIPANGG+L ALY FH +D A+G+IGLI+ FVI+N LS+FQIY MPMFDDMES Y R KK CPWWLRVI+R +FGY CFFVAVA+PF GS +GL+GG+ LPVTLAYPCFMWL +KKPK+Y + WW+NW LGVLG+ +S +L+AAG YVVI TG++ SFFKP
Sbjct: 10 DVDAVSSAPITPRPASVDAVS--SAPITPRPASVAPTPPVAHTPPIVSLPPSQYHSPSLSRSPLLTPGGTNRKTPRIIRTPRFITPLGSPLRKAIKLTKLDPQDAWLPITESRNGNAYYAAYHTLCSGIGIQALVLPVAFTILGWTWGIIGLTLAFIWQLYTLYLLVQLHESPENGVRYSRYMQLASATFGEKLSKFLVAFPIMYLSGGTCVALIVIGGSTSKMFYQTLCGATCSNPKPLTNVEWYLVFTCAAVVLSQLPNLNSIAGVSLIGGLTAVGYCTAMWIVSVSEGRLPNVSYNPVRASTEIARIFDVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSSIPMWRGVKGAYLIVAMCLFPIAIGGYWAYGHMIPANGGMLAALYGFHSRDVARGVIGLISFFVIVNALSSFQIYGMPMFDDMESNYTRRFKKACPWWLRVIIRAMFGYGCFFVAVAIPFLGSVAGLVGGLSLPVTLAYPCFMWLKMKKPKMYGASWWVNWGLGVLGMGLSGILIAAGIYVVIETGIQVSFFKP 546
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2M2G6 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 342/467 (73.23%), Postives = 395/467 (84.58%), Query Frame = 0
Match: A0A7N2M2G6 (Aa_trans domain-containing protein {ECO:0000259|Pfam:PF01490})
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 342/467 (73.23%), Postives = 395/467 (84.58%), Query Frame = 0
Query: 66 RTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
RTPR TPRF+TPLGSP+RKAL KLDP+DAWLPIT+SRNGN YYAAFHTL SGIG+QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE E +RYSRY+QL+ A FGE+L K++ALFPI YLS GTC LI+IGGS+ + FFQIVC TCS PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SLVGA+TAVGYCTMIW SVAEGR+ GVSYNP +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMW+GV+VSY +I CLFPLAIGGYW YGQ IPANGG+LTALY FH +D ++ ++GL ++FVI+N LS+FQIY MPMFDDMES Y R K+PCPWWLR I R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL I+KPK+Y ++WWLNW LGVLG+ +S +L+AAG YVVI TGVE SFFKP
Sbjct: 68 RTPRLSLTPRFITPLGSPVRKALRMTKLDPQDAWLPITESRNGNKYYAAFHTLCSGIGVQALVLPVAFTILGWTWGIIGLTLAFIWQLYTLWLLVQLHESTENGMRYSRYLQLSCATFGERLGKLLALFPIMYLSGGTCVALIIIGGSTSKLFFQIVCGA-TCSAKPLTTVEWYLVFTCAAVVLSQLPNLNSIAGLSLVGAVTAVGYCTMIWAVSVAEGRLPGVSYNPVRGSTQVVRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWQGVRVSYTVISACLFPLAIGGYWAYGQKIPANGGMLTALYQFHSRDASQAVLGLTSLFVIVNALSSFQIYGMPMFDDMESKYTVRKKQPCPWWLRAIFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIRKPKMYGAMWWLNWFLGVLGMSLSAVLIAAGLYVVIDTGVEVSFFKP 533
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438K5X1 ((Lysine histidine transporter-like 8 {ECO:0000313|EMBL:RVX16595.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 352/522 (67.43%), Postives = 418/522 (80.08%), Query Frame = 0
Match: A0A438K5X1 ((Lysine histidine transporter-like 8 {ECO:0000313|EMBL:RVX16595.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 352/522 (67.43%), Postives = 418/522 (80.08%), Query Frame = 0
Query: 11 TSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLTTPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
+ST +TP + A TP VS P + + +P+ P + + A Q++TP + +RTPR TPRF+TPLGSP+R+ L KLDP+DAWLPIT+SRNGNAYYAAFHTL SGIG QALVLPVAFT LGWTW II LTLAF+WQLYTL+LLVQLHE E +RYSRY+QL NA FGE+L ++ALFPI YLS GTC LI+IGGS+ + F+QIVC TC+ PLT+ EWYLVFT AAV+LSQLPNLNSIAG+SL+GA+TA+GYCT IW+ SVAEGR+ GVSYNP G+ I+ IF +LNA+GIIAFAFRGHNL+LEIQATMPSSEK PSRVPMWKGVK SY II + LFPLAIGGYW YG+MIP+NGGILTALY FH QD ++ ++GL ++F+I+N +S+FQIY MPMFD MES Y +RMKKPCPWWLR + R +FGY CFFVAVA+PF GS +GLIGGI LPVTLAYPCFMWL IKKPK YS WWLNW LG+LG+ +S L+AAG YVVI TG+E FF P
Sbjct: 8 SSTPITPRPATTAPTPPVSCPPS-QFHSPSLTRSPLLHTDNEEAPQSKTP--KTSRTPRLSLTPRFITPLGSPMRRVLRLTKLDPQDAWLPITESRNGNAYYAAFHTLCSGIGAQALVLPVAFTILGWTWGIINLTLAFIWQLYTLWLLVQLHESTETGMRYSRYLQLFNATFGERLGNLLALFPIMYLSGGTCVALIIIGGSTSKTFYQIVCG-ATCTKVPLTTVEWYLVFTCAAVLLSQLPNLNSIAGVSLIGAVTAIGYCTSIWVVSVAEGRLPGVSYNPVKEGTDIEHIFSVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSRVPMWKGVKFSYTIIALGLFPLAIGGYWAYGRMIPSNGGILTALYAFHSQDVSQFVLGLTSLFIIVNAVSSFQIYGMPMFDFMESKYTTRMKKPCPWWLRSLFRAMFGYGCFFVAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKIKKPKTYSPTWWLNWGLGMLGMGLSGALIAAGIYVVIDTGIEAKFFHP 525
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3IBS7 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO80014.1}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 355/538 (65.99%), Postives = 429/538 (79.74%), Query Frame = 0
Match: A0A1R3IBS7 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO80014.1}))
HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 355/538 (65.99%), Postives = 429/538 (79.74%), Query Frame = 0
Query: 1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGAR--TPRFLT----TPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
MG E + E+ ST +TP S A TP +SAP + + +P SP + S+P P+A+ + TPR T TPRF+TPLGSPIR+AL +LDP DAWLPIT+SRNGNAYYAAFHTL SGIGIQALVLPVAFT LGWTW II LT+AF+WQLYTLY+LVQLHE + +RYSRY+QL A FGEKL+K +ALFPI YLS GTCT LI+IGG++ + FF IVC TC P T+ EWYL+FT AAV+LSQLPNLNSIAG+SL+GAITA+GYCT+IW+ SV EGR+ GVSYNP +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMW+GVK SY +I +CLFPLAIGGYW YGQMIP +GG+LTALY FHG+DT++ ++GL ++FVIIN +S+FQIYAMPMFDD+ES +V +MKKP PWW R I R + GY CFF+AVA+PF GS +GL+GGI LPVTLAYPCFMWL IKKPKV+S +WWLNWILGV+G+ +S +L+AAG YV+I TGVE SFFKP
Sbjct: 1 MGSEFNNEIG-STPITPRPGSVAPTPPISAPPS---QFHSPSLSRSPLLASSPDHDHIKPAAKTPKSSTPRNFTPKIRTPRFITPLGSPIRRALKLTRLDPNDAWLPITESRNGNAYYAAFHTLCSGIGIQALVLPVAFTILGWTWGIINLTIAFIWQLYTLYILVQLHESTDTGMRYSRYLQLCTATFGEKLAKWLALFPIMYLSGGTCTALIVIGGATLKMFFNIVCG-GTCKAQPPTTVEWYLIFTCAAVLLSQLPNLNSIAGVSLIGAITAIGYCTIIWVVSVVEGRMPGVSYNPVKGSTEVIRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWRGVKFSYTLIALCLFPLAIGGYWAYGQMIPKDGGMLTALYAFHGKDTSQFILGLTSLFVIINAVSSFQIYAMPMFDDVESVFVKKMKKPVPWWFRAISRAMIGYGCFFIAVAIPFLGSLAGLVGGIALPVTLAYPCFMWLKIKKPKVFSPMWWLNWILGVVGMALSGILIAAGLYVIIDTGVEVSFFKP 533
BLAST of XM_017387618.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JAY1 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO91998.1}))
HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 355/536 (66.23%), Postives = 426/536 (79.48%), Query Frame = 0
Match: A0A1R3JAY1 ((Amino acid transporter, transmembrane {ECO:0000313|EMBL:OMO91998.1}))
HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 355/536 (66.23%), Postives = 426/536 (79.48%), Query Frame = 0
Query: 1 MGHEVDLELSTSTGVTPEVKSEASTPGVSAPRTPKRKAPAPISIPSPYIISAPASQAQTPSARGARTPRFLT----TPRFLTPLGSPIRKALNFVKLDPKDAWLPITQSRNGNAYYAAFHTLSSGIGIQALVLPVAFTYLGWTWAIILLTLAFVWQLYTLYLLVQLHEDFEKEVRYSRYMQLANAAFGEKLSKVIALFPIGYLSMGTCTTLIMIGGSSCERFFQIVCNPMTCSTTPLTSAEWYLVFTSAAVILSQLPNLNSIAGISLVGAITAVGYCTMIWITSVAEGRIHGVSYNPTLSGSKIQKIFDILNAVGIIAFAFRGHNLVLEIQATMPSSEKQPSRVPMWKGVKVSYAIILMCLFPLAIGGYWTYGQMIPANGGILTALYLFHGQDTAKGLIGLINMFVIINGLSTFQIYAMPMFDDMESTYVSRMKKPCPWWLRVILRTLFGYFCFFVAVAMPFQGSFSGLIGGIYLPVTLAYPCFMWLIIKKPKVYSSVWWLNWILGVLGVCVSVLLVAAGAYVVIHTGVEGSFFKP 532
MG E + E+ ST +TP S A TP +SAP + + +P SP + S+P + TPR T TPRF+TPLGSPIR+AL +LDP DAWLPIT+SRNGNAYYAAFHTL SGIGIQALVLPVAFT LGWTW II LT+AF+WQLYTLY+LVQLHE + +RYSRY+QL +A FGEKL+K +ALFPI YLS GTCT LI+IGGS+ + FF IVC TC+ P T EWYL+FTSAAV+LSQLPNLNSIAG+SL+GAITA+GYCT+IW+ SV EGR+ GVSYNP +++ +IFD+LNA+GIIAFAFRGHNL+LEIQATMPS EK PSRVPMWKGVK SY +I +CLFPLAIGGYW YGQMIP +GG+LTALY FH +DT++ ++GL ++FVIIN +S+FQIYAMPMFDD+ES +V +MKKP PWW R I R + GY CFF+AVA+PF GS +GL+GGI LPVTLAYPCFMWL IKKPKV+S +WWLNWILGV+G+ +S +L+AAG YV+I TGVE SFFKP
Sbjct: 1 MGSEFNNEIG-STPITPRPGSVAPTPPISAPPS---QFHSPSLSRSPLLASSPDHIKPATKTPKSSTPRNFTPKIRTPRFITPLGSPIRRALKLTRLDPNDAWLPITESRNGNAYYAAFHTLCSGIGIQALVLPVAFTILGWTWGIINLTIAFIWQLYTLYILVQLHESTDTGMRYSRYLQLCSATFGEKLAKWLALFPIMYLSGGTCTALIVIGGSTLKMFFNIVCG-GTCTAQPPTPVEWYLIFTSAAVLLSQLPNLNSIAGVSLIGAITAIGYCTIIWVVSVVEGRMPGVSYNPVKGSTEVIRIFDVLNALGIIAFAFRGHNLILEIQATMPSDEKHPSRVPMWKGVKFSYTLIALCLFPLAIGGYWAYGQMIPKDGGMLTALYAFHSKDTSQFILGLTSLFVIINAVSSFQIYAMPMFDDVESVFVKKMKKPVPWWFRAISRAMIGYGCFFIAVAIPFLGSLAGLVGGIALPVTLAYPCFMWLKIKKPKVFSPMWWLNWILGVVGMALSGILIAAGLYVIIDTGVEVSFFKP 531
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5BCM8 | E-Value: 0.000e+0, PID: 91.20 | Aa_trans domain-containing protein {ECO:0000259|Pf... [more] |
| A0A218XGE4 | E-Value: 0.000e+0, PID: 67.11 | (lysine histidine transporter-like 8 {ECO:0000313|... [more] |
| A0A833UL82 | E-Value: 0.000e+0, PID: 67.68 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5453... [more] |
| A0A2I4DGB2 | E-Value: 0.000e+0, PID: 67.68 | (lysine histidine transporter-like 8 {ECO:0000313|... [more] |
| F6I2D7 | E-Value: 0.000e+0, PID: 67.62 | Aa_trans domain-containing protein {ECO:0000259|Pf... [more] |
| A0A6I9TUT2 | E-Value: 0.000e+0, PID: 65.49 | (lysine histidine transporter-like 8 {ECO:0000313|... [more] |
| A0A7N2M2G6 | E-Value: 0.000e+0, PID: 73.23 | Aa_trans domain-containing protein {ECO:0000259|Pf... [more] |
| A0A438K5X1 | E-Value: 0.000e+0, PID: 67.43 | (Lysine histidine transporter-like 8 {ECO:0000313|... [more] |
| A0A1R3IBS7 | E-Value: 0.000e+0, PID: 65.99 | (Amino acid transporter, transmembrane {ECO:000031... [more] |
| A0A1R3JAY1 | E-Value: 0.000e+0, PID: 66.23 | (Amino acid transporter, transmembrane {ECO:000031... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |