Resource Type:
Polypeptide
Name:
XM_017383950.1
Identifier:
XM_017383950.1-protein
Sequence:
MDQTNHPSVIQKINFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHD
ISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKL
LIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFP
TQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSL
DYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCV
GIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPI
DTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAG
AGVLAGYDKLQVLVLGKKYGSGGA
Sequence Length:
374
Sequence Checksum:
30e4e7e83a2aab8e4cb63d72288c96cb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017383950.1, derives from mRNA, XM_017383950.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835TF60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9686429.1}))
HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 304/383 (79.37%), Postives = 335/383 (87.47%), Query Frame = 0
Match: A0A835TF60 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9686429.1}))
HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 304/383 (79.37%), Postives = 335/383 (87.47%), Query Frame = 0
Query: 2 DQTNHPSVIQKI----------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D PSV+QK+ + G Q P+ +QR+ GNYS+AG QH M +P +S D+S+ +S+ +PVFVQAP EKG+ GF DFLMGGVSAAVSKTA APIERVKLLIQNQDEM+K+GRLSEPYKGIG+CFSRT+KDEG++SLWRGN ANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SG AGASSLLFVYSLDYARTRL NDAKA KKGG +QFNGLVDVY+KTL SDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGK+QDSFFASFALGWVITNGAG ASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVLAGYDKLQV++LGKKYGSGGA
Sbjct: 3 DTPQQPSVMQKMASQVHLSSSFSQGFQRPASHQRQFAYGNYSVAGFQHAMTRPCQSIPDMSLVASSTAPVFVQAPSEKGLAGFAVDFLMGGVSAAVSKTATAPIERVKLLIQNQDEMIKAGRLSEPYKGIGECFSRTIKDEGMMSLWRGNNANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGATAGASSLLFVYSLDYARTRLTNDAKAGKKGGEKQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWVITNGAGFASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVLLGKKYGSGGA 385
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5ND14 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5565092.1}))
HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 302/381 (79.27%), Postives = 335/381 (87.93%), Query Frame = 0
Match: A0A5N5ND14 ((Uncharacterized protein {ECO:0000313|EMBL:KAB5565092.1}))
HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 302/381 (79.27%), Postives = 335/381 (87.93%), Query Frame = 0
Query: 2 DQTNHPSVIQKI--------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D+T PSV+QK+ +F P+ +QR+ GNYSIAG Q+ + +P +S D+S+ +S+ +PVFVQAP EKG+ GF DFLMGGVSAAVSKTA APIERVKLLIQNQDEM+K+GRLSEPYKGIG+CF RT+KDEG++SLWRGN ANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNL SG AGASSLLFVYSLDYARTRL NDAKA K+GG +QFNGLVDVY+KTL SDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGKMQDSFFASF LGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVLAGYDKLQV+ +GKKYGSGGA
Sbjct: 267 DRTQQPSVMQKMASQVHLSSSFSQGFPASHQRQLAYGNYSIAGFQYALTRPCQSIPDMSLVASSTAPVFVQAPSEKGLAGFAVDFLMGGVSAAVSKTATAPIERVKLLIQNQDEMIKAGRLSEPYKGIGECFGRTIKDEGMMSLWRGNNANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLASGATAGASSLLFVYSLDYARTRLTNDAKAGKQGGEKQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKMQDSFFASFFLGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVFMGKKYGSGGA 647
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2JYA3 ((Uncharacterized protein {ECO:0000313|EMBL:VFU19729.1}))
HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 304/380 (80.00%), Postives = 334/380 (87.89%), Query Frame = 0
Match: A0A6N2JYA3 ((Uncharacterized protein {ECO:0000313|EMBL:VFU19729.1}))
HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 304/380 (80.00%), Postives = 334/380 (87.89%), Query Frame = 0
Query: 2 DQTNHPSVIQKI--------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGG 373
D+T PSV+QK+ +F P+ +QR+ GNYSIAG Q+ M +P +S D+S+ +S+ +PVFVQAP EKG+ GF DFLMGGVSAAVSKTA APIERVKLLIQNQDEM+K+GRLSEPYKGIG+CF RT+KDEG++SLWRGN ANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNL SG AGASSLLFVYSLDYARTRL NDAKA K+GG +QFNGLVDVY+KTL SDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASF LGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVLAGYDKLQV+ LGKKYGSGG
Sbjct: 190 DRTQQPSVMQKMASQVHLSSSFSQGFPAPHQRQFAYGNYSIAGFQYAMTRPCQSIPDMSLVASSSAPVFVQAPSEKGLAGFAVDFLMGGVSAAVSKTATAPIERVKLLIQNQDEMIKAGRLSEPYKGIGECFGRTIKDEGMMSLWRGNNANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLASGATAGASSLLFVYSLDYARTRLTNDAKAGKQGGEKQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFFLGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVFLGKKYGSGG 569
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S8ITK3 ((Uncharacterized protein {ECO:0000313|EMBL:THU52063.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 302/388 (77.84%), Postives = 328/388 (84.54%), Query Frame = 0
Match: A0A4S8ITK3 ((Uncharacterized protein {ECO:0000313|EMBL:THU52063.1}))
HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 302/388 (77.84%), Postives = 328/388 (84.54%), Query Frame = 0
Query: 2 DQTNHPSVIQKI-----------------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSG 372
DQ NHP+V+QK+ N + PSL QR+ N + G Q+P + +++ I +S VSPVF AP EKG GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRLSEPYKGI DCFSRT+KDEGV+SLWRGNTANVIRYFPTQALNFAFKDYFK +FNFKKD+DGYWKWFAGNL SGGAAGA SLLFVYSLDYARTRLANDAKAAKKGG RQFNGLVDVY+KTL SDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPVLLTG +QDSFFASFALGW+ITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRAIAGAGVLAGYDKLQ++V GKKYGSG
Sbjct: 57 DQVNHPTVMQKVAGQLHLRSSFSRDPQALNCSLYSPSLYQRRFTTVNCTNGGFQNPSMAVYSGTYELPIVTS-VSPVFAHAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGISDCFSRTIKDEGVLSLWRGNTANVIRYFPTQALNFAFKDYFKRMFNFKKDKDGYWKWFAGNLASGGAAGACSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGSLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLAGYDKLQLIVFGKKYGSG 443
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QQ43 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 320/391 (81.84%), Postives = 339/391 (86.70%), Query Frame = 0
Match: A0A2R6QQ43 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0
Identity = 320/391 (81.84%), Postives = 339/391 (86.70%), Query Frame = 0
Query: 1 MDQTNHPSVIQKI-----------------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
MDQ HPSV QK+ G Q PSL QR+ + GNY+ A LQ PM+QP +R D+S +SA SPVFVQAP EKG GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+KSGRLSEPYKGIGDCF RT+KDEG SLWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SGGAAGASSLLFVYSLDYARTRLANDAKAAKKGG RQFNGLVDVY+KT+ASDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVLAGYDKLQ++V GKKYGSGGA
Sbjct: 3 MDQPQHPSVAQKVAGQFLLRCSPTQDLQAYESGFQRPSLYQRQFQYGNYTNAALQFPMLQPCGARQDLSTFASARSPVFVQAPSEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFGRTIKDEGFASLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMASDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQMIVFGKKYGSGGA 393
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9HYU8 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 312/365 (85.48%), Postives = 331/365 (90.68%), Query Frame = 0
Match: A0A2N9HYU8 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 312/365 (85.48%), Postives = 331/365 (90.68%), Query Frame = 0
Query: 10 IQKINFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
+Q + G Q P+LN+R GNYS AGLQ+PM Q R+ D+S+ + A S V VQAPQEKG GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+KSGRLSEPYKGIGDCF RTM+DEGVVSLWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVY+KTL SDG+AGLYRGF ISCVGIIVYRGLYFGMYDSLKPVLLTG +QDSFFASFALGW+ITNGAGLASYPIDTVRRRMMMTSGEAVKYK S DA SQI+KNEG KSLFKGAGANILRA+AGAGVLAGYDKLQ++VLGKKYGSGGA
Sbjct: 28 VQNRSGGFQSPALNKRHFAYGNYSNAGLQYPMTQSCRATQDLSLVAPAASAVLVQAPQEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMQDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIVLGKKYGSGGA 392
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836XSU1 ((ADP,ATP carrier protein {ECO:0000313|EMBL:KAG5227650.1}))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 312/383 (81.46%), Postives = 342/383 (89.30%), Query Frame = 0
Match: A0A836XSU1 ((ADP,ATP carrier protein {ECO:0000313|EMBL:KAG5227650.1}))
HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 312/383 (81.46%), Postives = 342/383 (89.30%), Query Frame = 0
Query: 2 DQTNHPSVIQKI----------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D+ PSV+QK+ + G Q P+L+QR+ GNYS AG Q+ M + +S D+S+ +S+ SPVFVQAP EKG+ GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRLSEPYKGIGDCFSRTMK+EG+V+LWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SGGAAGASSLLFVYSLDYARTRLANDAKAAKKGG RQFNGLVDVYKKT+ SDGVAGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGK+QDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVL+GYDKLQ++VLGKK+GSGGA
Sbjct: 3 DRRQQPSVMQKMASQVHLSSSFSQGFQRPALHQRQVAYGNYSNAGFQYAMTRACQSTPDMSLIASSTSPVFVQAPSEKGLAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFSRTMKEEGMVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTMQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQMIVLGKKFGSGGA 385
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5P0L4 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 311/383 (81.20%), Postives = 342/383 (89.30%), Query Frame = 0
Match: A0A5N5P0L4 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 311/383 (81.20%), Postives = 342/383 (89.30%), Query Frame = 0
Query: 2 DQTNHPSVIQKI----------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D+ PSV+QK+ + G Q P+L+QR+ GNYS AG Q+ M + +S D+S+ +S+ SPVFVQAP EKG+ GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRLSEPYKGIGDCFSRTMK+EG+V+LWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SGGAAGASSLLFVYSLDYARTRLANDAKAAKKGG RQFNGLVDVY+KT+ SDGVAGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGK+QDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVL+GYDKLQ++VLGKK+GSGGA
Sbjct: 3 DRRQQPSVMQKMASQVHLSSSFSQGFQRPALHQRQAAYGNYSNAGFQYAMTRACQSTPDMSLIASSTSPVFVQAPSEKGLAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFSRTMKEEGMVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQMIVLGKKFGSGGA 385
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2M788 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 311/383 (81.20%), Postives = 341/383 (89.03%), Query Frame = 0
Match: A0A6N2M788 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 311/383 (81.20%), Postives = 341/383 (89.03%), Query Frame = 0
Query: 2 DQTNHPSVIQKI----------NFGVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D PSV+QK+ + G Q P+L+QR+ GNYS AG Q+ M + +S D+S+ +S+ SPVFVQAP EKG+ GF DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEM+K+GRLSEPYKGIGDCFSRTMK+EG+V+LWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGNL SGGAAGASSLLFVYSLDYARTRLANDAKAAKKGG RQFNGLVDVY+KT+ SDGVAGLYRGF ISCVGIIVYRGLYFGMYDSLKPV+LTGK+QDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKGAGANILRA+AGAGVL+GYDKLQ++VLGKK+GSGGA
Sbjct: 3 DTRQQPSVMQKMASQVHLSSSFSQGFQRPALHQRQVAYGNYSNAGFQYAMTRACQSTPDMSLIASSTSPVFVQAPSEKGLAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFSRTMKEEGMVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMQSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQMIVLGKKFGSGGA 385
BLAST of XM_017383950.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A484KA24 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 296/391 (75.70%), Postives = 332/391 (84.91%), Query Frame = 0
Match: A0A484KA24 (ADP/ATP translocase {ECO:0000256|RuleBase:RU368008} (ADP,ATP carrier protein {ECO:0000256|RuleBase:RU368008}))
HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 296/391 (75.70%), Postives = 332/391 (84.91%), Query Frame = 0
Query: 2 DQTNHPSVIQKINF------------------GVQHPSLNQRKCKGGNYSIAGLQHPMVQPNRSRHDISITSSAVSPVFVQAPQEKGIKGFLTDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLSEPYKGIGDCFSRTMKDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGRQFNGLVDVYKKTLASDGVAGLYRGFTISCVGIIVYRGLYFGMYDSLKPVLLTGKMQDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKGSMDALSQIMKNEGTKSLFKGAGANILRAIAGAGVLAGYDKLQVLVLGKKYGSGGA 374
D +P+V QK+ + G++ P LNQ N+ G+Q+P QP ++ D+S+ ++ SPVFVQAP EKG GF DFLMGGVSAAVSKTAAAPIER+KLLIQNQDEM+K+GRLSEPYKGIGDCFSRT+KDEG++SLWRGNTANVIRYFPTQALNFAFKDYFK LFNFKKDRDGYWKWFAGN+ SGG AGASSLLFV+SLDYARTRLANDAKAAKKGG RQFNGL+DVYKKT ASDG+AGLYRGF +SCVGI VYRGLYFG+YDS+KPV+LTGK++DSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYK S+DA SQI+KNEG KSLFKG GANILRA+AGAGVLAGYDKLQ++V GKKYGSGGA
Sbjct: 3 DMYQYPTVAQKVAYQLHLSSNAKHQDAQALYGGIRKPVLNQMGFTYRNHITNGIQYPNTQPCKATQDLSLITANASPVFVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMIKAGRLSEPYKGIGDCFSRTIKDEGIISLWRGNTANVIRYFPTQALNFAFKDYFKGLFNFKKDRDGYWKWFAGNIASGGCAGASSLLFVFSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTFASDGIAGLYRGFNLSCVGIFVYRGLYFGLYDSIKPVVLTGKLEDSFFASFALGWVITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGFKSLFKGGGANILRAVAGAGVLAGYDKLQLIVFGKKYGSGGA 393
| Match Name | Stats | Description |
|---|---|---|
| A0A835TF60 | E-Value: 0.000e+0, PID: 79.37 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9686... [more] |
| A0A5N5ND14 | E-Value: 0.000e+0, PID: 79.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAB5565... [more] |
| A0A6N2JYA3 | E-Value: 0.000e+0, PID: 80.00 | (Uncharacterized protein {ECO:0000313|EMBL:VFU1972... [more] |
| A0A4S8ITK3 | E-Value: 0.000e+0, PID: 77.84 | (Uncharacterized protein {ECO:0000313|EMBL:THU5206... [more] |
| A0A2R6QQ43 | E-Value: 0.000e+0, PID: 81.84 | ADP/ATP translocase {ECO:0000256|RuleBase:RU368008... [more] |
| A0A2N9HYU8 | E-Value: 0.000e+0, PID: 85.48 | ADP/ATP translocase {ECO:0000256|RuleBase:RU368008... [more] |
| A0A836XSU1 | E-Value: 0.000e+0, PID: 81.46 | (ADP,ATP carrier protein {ECO:0000313|EMBL:KAG5227... [more] |
| A0A5N5P0L4 | E-Value: 0.000e+0, PID: 81.20 | ADP/ATP translocase {ECO:0000256|RuleBase:RU368008... [more] |
| A0A6N2M788 | E-Value: 0.000e+0, PID: 81.20 | ADP/ATP translocase {ECO:0000256|RuleBase:RU368008... [more] |
| A0A484KA24 | E-Value: 0.000e+0, PID: 75.70 | ADP/ATP translocase {ECO:0000256|RuleBase:RU368008... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |