Resource Type:
Polypeptide
Name:
XM_017373674.1
Identifier:
XM_017373674.1-protein
Sequence:
MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVIS
GVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNRGEWRRMS
LPAMLLGETVGEILQASQFAKDMVAIAPTNTLDATDDPKTPLNVRRKQRS
SPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKREN
DKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVI
ARNRPTTPHKFLIKSPASASKFQVKIKSPPLSLSPTRPSTLIRKSPKIST
ATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPM
QFSARRI
Sequence Length:
357
Sequence Checksum:
872790b41ac07685f74d803561732d28
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017373674.1, derives from mRNA, XM_017373674.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WGJ2 ((probable microtubule-binding protein TANGLED {ECO:0000313|RefSeq:XP_027114603.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 1.743e-168
Identity = 257/375 (68.53%), Postives = 304/375 (81.07%), Query Frame = 0
Match: A0A6P6WGJ2 ((probable microtubule-binding protein TANGLED {ECO:0000313|RefSeq:XP_027114603.1}))
HSP 1 Score: 481.1 bits (1237), Expect = 1.743e-168
Identity = 257/375 (68.53%), Postives = 304/375 (81.07%), Query Frame = 0
Query: 1 MVARSPP--KLKKMVAP-------LNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLD-ATDDPKTPLNVRRKQRSS--PENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFH-TSPTKNQQKFNKTMSPVIARNRPTTPH----KFLIKSPASASKFQVKIKSPPLSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSN-IDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PP + KKMVAP L+PTL+RETV+KVDK +ARLQELQ+TVTGG KVISGV+LSPRSTR YL+TSLRCKQES RI+N T R+SPPG LPTN G+W+RMSLPAMLLGETVGEILQASQFA+ +V +N + DDPKTPL RR+ + + PENSEL++RRKREKQ ALQSIR ++D P LQRAKSRINFK+SP K DKENCRF ANRVSPR++PWA+K VLFPNPLFH +SPT Q+ KT SPVIARNR + KFLIKSP SASKF VKI+SPPLS+SPTR +LI++SPK+ST KLRRSFSPSRLA+K+VSPL++RKS+ N DG+KMMMSGLKQRP+++ PMQF+A RI
Sbjct: 1 MVARTPPNHQHKKMVAPPPPPPPLLDPTLIRETVNKVDKSIARLQELQFTVTGGTKVISGVTLSPRSTRSYLRTSLRCKQESLRIKNVTARRSPPGKLPTNTGDWKRMSLPAMLLGETVGEILQASQFARRIVETVASNKPNRPADDPKTPLTHRRRNQMTPNPENSELRIRRKREKQVALQSIRSESDAPSLQRAKSRINFKVSPLHKNNCDKENCRFIANRVSPRNRPWARKTVLFPNPLFHSSSPTSQHQRLCKTKSPVIARNRQVLENKFLIKFLIKSPPSASKFHVKIRSPPLSISPTRSISLIKRSPKVSTTAKLRRSFSPSRLASKIVSPLKSRKSVQNKTDGMKMMMSGLKQRPTTATPMQFAAPRI 375
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2L372 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p006978:mrna}))
HSP 1 Score: 479.174 bits (1232), Expect = 3.359e-168
Identity = 254/356 (71.35%), Postives = 296/356 (83.15%), Query Frame = 0
Match: A0A7N2L372 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL03p006978:mrna}))
HSP 1 Score: 479.174 bits (1232), Expect = 3.359e-168
Identity = 254/356 (71.35%), Postives = 296/356 (83.15%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNRGE-WRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT-DDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARNRPTTPHKFLIKSPASA-SKFQVKIKSPP-LSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQF 352
MVAR+P KLKKMVAP+NP LLRETV KVD+C+ARLQELQYTV+GG KVISGVSLSPRSTR YL+TSLRCKQESARI+NAT +KSP G P + GE WRRMSLPAML+GETVGEILQASQFA+++VA T T DDPKTP+ RR QR PEN+EL+ RRKREKQ LQ IR ++D P LQRA+SRINFK+SPPK RE DKEN R+ ANR+SP+++PWAKK VLFPNPLF ++ + QQKF KT SPVIARN+ TPHKFLIKSP SA SKFQVKIKSPP +SLSPTR ++L +KSPK+STA+KLRRSFSPSRLA +LVSPLR+RK + IDG +MSGLKQRP+ + PM+F
Sbjct: 1 MVARTPQKLKKMVAPINPVLLRETVKKVDRCMARLQELQYTVSGGTKVISGVSLSPRSTRGYLRTSLRCKQESARIKNATSKKSPVGKFPAHTGEEWRRMSLPAMLVGETVGEILQASQFAREIVAAVVNKTKKITLDDPKTPVTQRRNQRPQPENTELRTRRKREKQNKLQLIRSESDTPSLQRARSRINFKVSPPKIRELDKENSRYLANRISPKNRPWAKKTVLFPNPLFLSTASAQQQKFCKTRSPVIARNK-QTPHKFLIKSPPSASSKFQVKIKSPPVVSLSPTRHTSLSKKSPKMSTASKLRRSFSPSRLATRLVSPLRSRKGVQKIDG---LMSGLKQRPAVT-PMRF 351
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VEH1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18098.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 4.655e-168
Identity = 257/371 (69.27%), Postives = 302/371 (81.40%), Query Frame = 0
Match: A0A068VEH1 ((Uncharacterized protein {ECO:0000313|EMBL:CDP18098.1}))
HSP 1 Score: 479.559 bits (1233), Expect = 4.655e-168
Identity = 257/371 (69.27%), Postives = 302/371 (81.40%), Query Frame = 0
Query: 1 MVARSPP--KLKKMVAPLNPTL-------LRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLD-ATDDPKTPLNVRRKQRSSP--ENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFH-TSPTKNQQKFNKTMSPVIARNRPTTPHKFLIKSPASASKFQVKIKSPPLSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSN-IDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PP + KKMVAP P +RETV+KVDK +ARLQELQ+TVTGG KVISGV+LSPRSTR YL+TSLRCKQES RI+N T R+SPPG LPTN G+W+RMSLPAMLLG TVGEILQASQFA+ +V +N + DDPKTPL RR+ + +P ENSEL+VRRKREKQ ALQSIR ++D P LQRAKSRINFK+SP K DKENCRF ANRVSPR++PWA+K VLFPNPLFH +SPT Q+ KT SPVIARNR TPHKFLIKSP SASKF VKI+SPPLS+SPTR +LI++SPK+STA KLRRSFSPSRLA+K+VSPL++RKS+ N DG+KMMMSGLKQRP+++ PM+F+A RI
Sbjct: 1 MVARTPPNHQHKKMVAPPTPPPPLLDPTLIRETVNKVDKSIARLQELQFTVTGGTKVISGVTLSPRSTRSYLRTSLRCKQESLRIKNVTARRSPPGKLPTNTGDWKRMSLPAMLLGATVGEILQASQFARQIVETVASNKPNRPADDPKTPLTNRRRNQMTPNAENSELRVRRKREKQVALQSIRSESDAPSLQRAKSRINFKVSPLHKNNCDKENCRFIANRVSPRNRPWARKTVLFPNPLFHSSSPTSQHQRLCKTKSPVIARNR-QTPHKFLIKSPPSASKFHVKIRSPPLSISPTRSISLIKRSPKVSTAAKLRRSFSPSRLASKIVSPLKSRKSVQNKTDGMKMMMSGLKQRPTTATPMRFAAPRI 370
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834Z928 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8401670.1}))
HSP 1 Score: 474.167 bits (1219), Expect = 3.039e-166
Identity = 251/355 (70.70%), Postives = 290/355 (81.69%), Query Frame = 0
Match: A0A834Z928 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8401670.1}))
HSP 1 Score: 474.167 bits (1219), Expect = 3.039e-166
Identity = 251/355 (70.70%), Postives = 290/355 (81.69%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNR-GEWRRMSLPAMLLGETVGEILQASQFAKDMV-AIAPTNTLDATDDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARNRPTTPHKFLIKSPASASKFQVKIKSPPLSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFS 353
MVAR+PPK KKM APLNP LLRETV KVD+C+ARLQELQYTV+GG KVISGVSLSPRSTR YLKTSLRCKQES RI+NA R SP G N GEWRRMSLPAML+GETVGEILQAS+FA ++V A+A A++DPKTP+ RR QR PEN+EL+ RRKREKQ ALQSIR ++DPP LQRA+SRINFK+SPP+KREN KEN ANRVSP+++PWAKK VLFPNPLF +SP+ Q KF KT SPVI R + TPHKFLIKSP S+SKFQVKIKS P+SLSPTRP+TL +KSPKIS A+K RRSFSPS+LAN+LVSPL+NR S+ G +M+GLKQRP S+PM+FS
Sbjct: 1 MVARTPPKQKKMAAPLNPNLLRETVKKVDRCMARLQELQYTVSGGNKVISGVSLSPRSTRGYLKTSLRCKQESLRIKNAATRNSPVGKFQGNTGGEWRRMSLPAMLIGETVGEILQASRFASEVVTAVAAKTRKTASEDPKTPVTQRRNQRPHPENTELQARRKREKQIALQSIRSESDPPSLQRARSRINFKVSPPRKRENGKENWHM-ANRVSPKNRPWAKKTVLFPNPLFLSSPSSRQYKFCKTRSPVIGRTQ-QTPHKFLIKSPPSSSKFQVKIKSTPISLSPTRPTTLSKKSPKISAASKFRRSFSPSKLANRLVSPLKNRLSVQKSGG---LMTGLKQRP-PSMPMRFS 349
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K1XZS1 ((Uncharacterized protein {ECO:0000313|EMBL:PNT06287.1}))
HSP 1 Score: 466.848 bits (1200), Expect = 6.148e-163
Identity = 251/373 (67.29%), Postives = 296/373 (79.36%), Query Frame = 0
Match: A0A2K1XZS1 ((Uncharacterized protein {ECO:0000313|EMBL:PNT06287.1}))
HSP 1 Score: 466.848 bits (1200), Expect = 6.148e-163
Identity = 251/373 (67.29%), Postives = 296/373 (79.36%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLP-TNRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT-DDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARN-RPTTPHKFLIKSPASASKFQVKIKSPPLSL-------------SPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PP+ +KMVAPLNP LLRETV KV++C+ARLQELQYTV GG KVI GVSLSPRSTR YL+TSLRCKQES R ++ P+KSP G LP T+ GEWRRMSLPAML+GETVGEILQASQFA+++VA T +T +DPKTP+ +RKQR PE++ELK RRK+EKQT LQSIR ++D P L RA+SRINFK+SPPKK E DKEN R+ ANRVSPR++PWAKK VLFPNPLF ++ + QQKF KT SPVIARN + TTPHKFLIKSP S SKFQVKIK+PP+ SPTRP+ L RKSPK+STA+KLRRSFSPSRLANKLVSPL+ RK + DG ++MSGLKQRP ++ P +FS RI
Sbjct: 1 MVARTPPEQRKMVAPLNPVLLRETVKKVERCMARLQELQYTVAGGNKVIDGVSLSPRSTRGYLRTSLRCKQESLRTKSTAPKKSPAGKLPATSIGEWRRMSLPAMLVGETVGEILQASQFAREIVAAVACKTKKSTLEDPKTPVTQQRKQRPHPEDTELKSRRKKEKQTKLQSIRSESDSPCLLRARSRINFKVSPPKKSEVDKENARYLANRVSPRNRPWAKKTVLFPNPLFLSTDSTQQQKFCKTRSPVIARNKKQTTPHKFLIKSPPSGSKFQVKIKNPPVVCSLSPTRPTNLSRKSPTRPTNLSRKSPKLSTASKLRRSFSPSRLANKLVSPLKGRKIVLKSDG--LIMSGLKQRPIAT-PRRFSLGRI 370
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836XY89 ((Cyclin family protein {ECO:0000313|EMBL:KAG5232479.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 8.254e-163
Identity = 248/361 (68.70%), Postives = 295/361 (81.72%), Query Frame = 0
Match: A0A836XY89 ((Cyclin family protein {ECO:0000313|EMBL:KAG5232479.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 8.254e-163
Identity = 248/361 (68.70%), Postives = 295/361 (81.72%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPT-NRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT-DDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARN-RPTTPHKFLIKSPASASKFQVKIKSPP-LSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PPK +KMVAPLNP LLRETV KV++C+ARLQELQYTV GG KVI GVSLSPRSTR YL+TSLRCKQES RI+++ P+KSP G LP + GEWR+MSLPAML+GETVGEILQAS+FA+++VA A T T +DPKTP+ RRKQ+ PE++ELK RRK+EKQT LQS R ++ P L RA+SRINFK+SPPKK E DKEN R+ ANRVSPR++PWAKK VLFPNPLF ++ + QQKF KT SPVI R+ + TTPHKFLIKSP S SKFQVKIK+PP +SLSPTRP+ L +KSPK+STA+KLRRSFSPSRLANKLVSPL+ RK + DG +MSGLKQRP ++ P +FS RI
Sbjct: 1 MVARTPPKQRKMVAPLNPVLLRETVKKVERCMARLQELQYTVAGGEKVIDGVSLSPRSTRGYLRTSLRCKQESLRIKSSVPKKSPVGKLPAPSLGEWRQMSLPAMLVGETVGEILQASRFAREIVAAAACKTKKTTIEDPKTPVTQRRKQKPHPEDTELKSRRKKEKQTKLQSTRSESGSPCLLRARSRINFKVSPPKKSEVDKENARYLANRVSPRNRPWAKKTVLFPNPLFLSTDSTQQQKFCKTRSPVIGRSKKQTTPHKFLIKSPPSGSKFQVKIKNPPVVSLSPTRPANLSKKSPKLSTASKLRRSFSPSRLANKLVSPLKGRKIVQKSDG---LMSGLKQRPIAT-PRRFSLGRI 357
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5Q2Q4 ((Cyclin family protein {ECO:0000313|EMBL:TKS04350.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 1.335e-162
Identity = 254/364 (69.78%), Postives = 298/364 (81.87%), Query Frame = 0
Match: A0A4U5Q2Q4 ((Cyclin family protein {ECO:0000313|EMBL:TKS04350.1}))
HSP 1 Score: 465.692 bits (1197), Expect = 1.335e-162
Identity = 254/364 (69.78%), Postives = 298/364 (81.87%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLP-TNRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT-DDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKR-ENDKENCRFSANRVSPRHKPWA-KKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARN-RPTTPHKFLIKSPASASKFQVKIKSPPL--SLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PPK +KMVAPLNP LLRETV KV++C+ARLQELQYTV GG+KVI GVSLSPRSTR YL+TSLRCKQES I++ P+KSP G LP T+ GEWRRMSLPAML+GETVGEILQASQFA+++VA T +T +DPKTPL RRKQR PE++ELK RRK+EKQT LQSIR ++ P L RA+SRINFK+SPPKK+ E DKEN R+ ANRVSPR++PWA KK VLFPNPLF ++ + QQKF KT SPVIARN + TTP KFLIKSP S SKFQVKIK+PP+ SLSPTRP+ L RKSPK+STA+KLRRSFSPSRLANKLVSPL+ RK + DG ++MSGLKQRP ++ P +FS RI
Sbjct: 1 MVARTPPKQRKMVAPLNPVLLRETVKKVERCMARLQELQYTVAGGKKVIDGVSLSPRSTRGYLRTSLRCKQESLSIKSTAPKKSPVGKLPATSIGEWRRMSLPAMLVGETVGEILQASQFAREIVAAVACKTKKSTLEDPKTPLTQRRKQRPHPEDTELKSRRKKEKQTKLQSIRSESGSPCLLRARSRINFKVSPPKKKSEVDKENARYLANRVSPRNRPWAKKKTVLFPNPLFLSTDSTQQQKFCKTRSPVIARNKKQTTPLKFLIKSPPSGSKFQVKIKNPPVVCSLSPTRPTNLSRKSPKLSTASKLRRSFSPSRLANKLVSPLKGRKIVQKSDG--LIMSGLKQRPIAT-PRRFSLGRI 361
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2LX01 ((Uncharacterized protein {ECO:0000313|EMBL:VFU45973.1}))
HSP 1 Score: 464.922 bits (1195), Expect = 2.239e-162
Identity = 250/362 (69.06%), Postives = 295/362 (81.49%), Query Frame = 0
Match: A0A6N2LX01 ((Uncharacterized protein {ECO:0000313|EMBL:VFU45973.1}))
HSP 1 Score: 464.922 bits (1195), Expect = 2.239e-162
Identity = 250/362 (69.06%), Postives = 295/362 (81.49%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESAR-IRNATPRKSPPGTLPT-NRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT-DDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARN-RPTTPHKFLIKSPASASKFQVKIKSPP-LSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PPK KKMVAPLNP LLRETV KV++C+ARLQELQYTV GG KVI GVSLSPRSTR YL+TSLRCKQES R I+++ P+KSP G LP + GEWR+MSLPAML+GETVGEILQAS+FA+++VA T T +DPKTP+ RRKQ+ PE++ELK RRK+EKQT LQSIR ++ P L RA+SRINFK+SPPKK E DKEN R+ ANRVSPR++PWAKK VLFPNPLF ++ + QQKF KT SPVI R+ + TTPHKFLIKSP S SKFQVKIK+PP +SLSPTRP+ L +KSPK+STA+KLRRSFSPSRLANKLVSPL+ RK + DG +MSGLKQRP S+ P +FS RI
Sbjct: 1 MVARTPPKQKKMVAPLNPVLLRETVKKVERCMARLQELQYTVAGGEKVIDGVSLSPRSTRGYLRTSLRCKQESLRRIKSSAPKKSPVGKLPAPSLGEWRQMSLPAMLVGETVGEILQASRFAREIVAAVACKTKKTTIEDPKTPVTQRRKQKHHPEDTELKSRRKKEKQTKLQSIRSESGSPCLLRARSRINFKVSPPKKSEVDKENARYLANRVSPRNRPWAKKTVLFPNPLFLSTDSTQQQKFCKTRSPVIGRSKKQTTPHKFLIKSPPSGSKFQVKIKNPPVVSLSPTRPANLSKKSPKLSTASKLRRSFSPSRLANKLVSPLKGRKIVQKSDG---LMSGLKQRPIST-PRRFSLGRI 358
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067JVF3 ((Uncharacterized protein {ECO:0000313|EMBL:KDP23519.1}))
HSP 1 Score: 464.922 bits (1195), Expect = 2.505e-162
Identity = 248/362 (68.51%), Postives = 299/362 (82.60%), Query Frame = 0
Match: A0A067JVF3 ((Uncharacterized protein {ECO:0000313|EMBL:KDP23519.1}))
HSP 1 Score: 464.922 bits (1195), Expect = 2.505e-162
Identity = 248/362 (68.51%), Postives = 299/362 (82.60%), Query Frame = 0
Query: 1 MVARSPPKLKKMVAPLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVIS-GVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLPTNR-GEWRRMSLPAMLLGETVGEILQASQFAKDMV-AIAPTNTLDATDDPKTPLNVRRKQRSSPENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKEN-CRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARNRPTTPHKFLIKSPASASKFQVKIKSPP-LSLSPTRPSTLIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PPK +++VAPLNP L+RETV KVD+C+ARLQELQYTVTGG KVIS GVSLSPRSTR YL+TSLRCKQES RI+NATP+KSP G LP + GEWRRMSLPAML+GETVGEILQA+QFA+++V A+A + +DPKTP+ +R ++ +PENSELK +RK+EKQ LQSIR ++ P LQRA+SRINFK+SPPKKRE +KEN + ANRVSPR++PWAKK VLFPNPLF ++ + QQKF +T SPVI+RN+ TTPHKFLIKSP SASKFQVKIK PP +SLSPTR L +KSPK+STA+KLRRSFSPSRLAN+LVSPL++RKS+ D V + SGLKQRP S+P +FS RI
Sbjct: 1 MVARTPPKQRRLVAPLNPVLIRETVKKVDQCMARLQELQYTVTGGNKVISSGVSLSPRSTRGYLRTSLRCKQESLRIKNATPKKSPVGKLPASVVGEWRRMSLPAMLVGETVGEILQATQFAREIVEAVASKTKKTSLEDPKTPMTQQRTRKPNPENSELKTKRKKEKQIKLQSIRSESPTPSLQRARSRINFKVSPPKKREIEKENTAAYLANRVSPRNRPWAKKTVLFPNPLFLSTDSTKQQKFFRTRSPVISRNKQTTPHKFLIKSPPSASKFQVKIKGPPVVSLSPTRAGNLSKKSPKVSTASKLRRSFSPSRLANRLVSPLKSRKSVQKSDNV--LTSGLKQRP-VSMPRRFSFGRI 359
BLAST of XM_017373674.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3JWV5 ((Uncharacterized protein {ECO:0000313|EMBL:OMO99157.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 3.363e-162
Identity = 259/367 (70.57%), Postives = 294/367 (80.11%), Query Frame = 0
Match: A0A1R3JWV5 ((Uncharacterized protein {ECO:0000313|EMBL:OMO99157.1}))
HSP 1 Score: 464.537 bits (1194), Expect = 3.363e-162
Identity = 259/367 (70.57%), Postives = 294/367 (80.11%), Query Frame = 0
Query: 1 MVARSPPKLKKMV-APLNPTLLRETVDKVDKCVARLQELQYTVTGGRKVISGVSLSPRSTRVYLKTSLRCKQESARIRNATPRKSPPGTLP-TNRGEWRRMSLPAMLLGETVGEILQASQFAKDMVAIAPTNTLDAT---DDPKTPLNVRRKQRSSP-ENSELKVRRKREKQTALQSIRVDADPPRLQRAKSRINFKISPPKKRENDKENCRFSANRVSPRHKPWAKKAVLFPNPLFHTSPTKNQQKFNKTMSPVIARNRPT-TPHKFLIKSPASASKFQVKIKSPPL--SLSPTRPST-LIRKSPKISTATKLRRSFSPSRLANKLVSPLRNRKSLSNIDGVKMMMSGLKQRPSSSIPMQFSARRI 357
MVAR+PPK +K+V APLNP LLRETV KV+KC+ARLQELQYTV GG KV+SGVSLSPRSTR YLKTSLRCKQES RI+NATPRKSP G P T GEW+RMSLPAML+GETVGEILQASQFA+++++ T T +DPKTPL +KQR P EN+ELK RRKREKQ LQ IR ++ P LQRA+SRINFK+SPPK RE DKEN R ANRVSPR+KPWAKK VLFPNPLF ++P QQKF KT SPVIAR R T TPHKFLIKSP SASKFQVKIKSPPL S+SPTR ST L +KSPK+S A+KLRRSFSPSRLAN+LVSPL++RKSL DG MSGLKQRP + + ++FS RI
Sbjct: 1 MVARTPPKQRKIVVAPLNPALLRETVKKVEKCMARLQELQYTVAGGTKVVSGVSLSPRSTRGYLKTSLRCKQESLRIKNATPRKSPVGKFPSTAGGEWKRMSLPAMLVGETVGEILQASQFAREILSAVDNKTKKKTSVVEDPKTPLTEHKKQRPQPDENTELKARRKREKQNKLQLIRTESGSPSLQRARSRINFKVSPPKIREFDKENNRHLANRVSPRNKPWAKKTVLFPNPLFSSTPASQQQKFCKTRSPVIARTRQTQTPHKFLIKSPPSASKFQVKIKSPPLVSSISPTRSSTNLSKKSPKLSAASKLRRSFSPSRLANRLVSPLKSRKSLPKSDGP---MSGLKQRP-ALMSIRFSTGRI 363
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6WGJ2 | E-Value: 1.743e-168, PID: 68.53 | (probable microtubule-binding protein TANGLED {ECO... [more] |
| A0A7N2L372 | E-Value: 3.359e-168, PID: 71.35 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A068VEH1 | E-Value: 4.655e-168, PID: 69.27 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1809... [more] |
| A0A834Z928 | E-Value: 3.039e-166, PID: 70.70 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8401... [more] |
| A0A2K1XZS1 | E-Value: 6.148e-163, PID: 67.29 | (Uncharacterized protein {ECO:0000313|EMBL:PNT0628... [more] |
| A0A836XY89 | E-Value: 8.254e-163, PID: 68.70 | (Cyclin family protein {ECO:0000313|EMBL:KAG523247... [more] |
| A0A4U5Q2Q4 | E-Value: 1.335e-162, PID: 69.78 | (Cyclin family protein {ECO:0000313|EMBL:TKS04350.... [more] |
| A0A6N2LX01 | E-Value: 2.239e-162, PID: 69.06 | (Uncharacterized protein {ECO:0000313|EMBL:VFU4597... [more] |
| A0A067JVF3 | E-Value: 2.505e-162, PID: 68.51 | (Uncharacterized protein {ECO:0000313|EMBL:KDP2351... [more] |
| A0A1R3JWV5 | E-Value: 3.363e-162, PID: 70.57 | (Uncharacterized protein {ECO:0000313|EMBL:OMO9915... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |