Resource Type:
Polypeptide
Name:
XM_017369008.1
Identifier:
XM_017369008.1-protein
Sequence:
MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMII
DFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQW
FFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLL
GAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGL
YNFVKVLGHTLFGLSRQIRTKKPETLPVEAGDSSAETSSLSYDDERRTQM
FLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAF
CNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIV
ATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFD
NLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVN
AIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKT
KADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVD
AFLGS
Sequence Length:
555
Sequence Checksum:
ef7f2dfc83177c0099ddb17ea5bf281f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017369008.1, derives from mRNA, XM_017369008.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4FTH2 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_018834942.1}))
HSP 1 Score: 981.86 bits (2537), Expect = 0.000e+0
Identity = 471/556 (84.71%), Postives = 510/556 (91.73%), Query Frame = 0
Match: A0A2I4FTH2 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_018834942.1}))
HSP 1 Score: 981.86 bits (2537), Expect = 0.000e+0
Identity = 471/556 (84.71%), Postives = 510/556 (91.73%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKPETLPVEAGDSSAE-TSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFLGS 555
MS++VAKQSTEAN AQNIKNP L WMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQV+ALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+A+ N+F+FDFSATYVGVGMICPYLIN+SLL+GA+LSWGIMWPLI+ RKG WY A+LS SSLHGLQGY+VFIAIAMILGDGLYNF KVL HTL+GL RQ+ K P T+ +G S E SLSYDD+RRT +FLKDQIPTW AVAGYVT+A++S+ TLPHIF LKWY++ VIYI AP LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAF++LGVPGS+YPAPYALVYRNM+ILGVEGFSALPK+CL LCYVFF AAIV+N IRD VGKK+A +IPLPMAMAIPFYLG YFAIDMCVGSLILFVW K+NK KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR TNAKVDAFLGS
Sbjct: 146 MSEVVAKQSTEANNAQNIKNPTLGWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTAGDGCGFANFPTFGLKAFDNRFYFDFSATYVGVGMICPYLINISLLVGAVLSWGIMWPLIDARKGSWYSAELSPSSLHGLQGYRVFIAIAMILGDGLYNFFKVLSHTLYGLYRQLSNKDPGTVIPLSGRSPPELPPSLSYDDQRRTALFLKDQIPTWLAVAGYVTIAIISVVTLPHIFSQLKWYYIVVIYIIAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFNDLGVPGSQYPAPYALVYRNMSILGVEGFSALPKHCLTLCYVFFFAAIVINGIRDLVGKKKAGFIPLPMAMAIPFYLGSYFAIDMCVGSLILFVWGKVNKAKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRGTNAKVDAFLGS 701
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q298 ((Metal-nicotianamine transporter like {ECO:0000313|EMBL:PSS00361.1}))
HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0
Identity = 459/555 (82.70%), Postives = 511/555 (92.07%), Query Frame = 0
Match: A0A2R6Q298 ((Metal-nicotianamine transporter like {ECO:0000313|EMBL:PSS00361.1}))
HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0
Identity = 459/555 (82.70%), Postives = 511/555 (92.07%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKPETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFLGS 555
MS+I+AKQSTEANA QNIKNP L WMIGFLFVVSFLGLFSVVPLRKIMIID+KLIYPSGTATAHLINSFHTPQGA+LAKKQV++LGKFFSFSF WGFFQWFFT+GD CGF FP+FGL+AY NKF+FDFSATYVGVGMICPYLINVSLL+GAILSWGIMWPLI +++GHWY A+L S+SLHGLQGY+VFI IAMILGDGLYNFVKVLGHTLFGL RQ+R K P ++ G S +S+SYDD+RRTQ+FLKD+IPT FAV GYV +AV+S ATLPHIFH LKWY++ VIY+ AP LAFCNAYGCGLTDWSLASTYGK+AIFTIGAWAGA+HGG+LAGLAACGVMMNIV+TASDLMQDFKTGYMTLASPRSMFVSQ+IGTAMGCVISPCVFWLFYKAFD+LG+PG++YPAPY LVYRNM+ILGVEGFSALPK+CL LCYVFFI A+V+NAIRD VGK++AK+IP+PMAMAIPFY+G YFAIDM VGS+ILFVW K+NK KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR+TN KVD FL S
Sbjct: 156 MSEIIAKQSTEANATQNIKNPTLGWMIGFLFVVSFLGLFSVVPLRKIMIIDYKLIYPSGTATAHLINSFHTPQGAKLAKKQVRSLGKFFSFSFLWGFFQWFFTAGDGCGFANFPSFGLKAYENKFYFDFSATYVGVGMICPYLINVSLLVGAILSWGIMWPLIHEKRGHWYSAELKSTSLHGLQGYRVFIGIAMILGDGLYNFVKVLGHTLFGLYRQLRDKDPGSVLPVGGRSPTTNASVSYDDQRRTQLFLKDEIPTCFAVVGYVGIAVISAATLPHIFHQLKWYYIVVIYVIAPTLAFCNAYGCGLTDWSLASTYGKIAIFTIGAWAGANHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQVIGTAMGCVISPCVFWLFYKAFDDLGIPGTQYPAPYGLVYRNMSILGVEGFSALPKHCLTLCYVFFIGAVVINAIRDVVGKEKAKFIPIPMAMAIPFYIGSYFAIDMFVGSMILFVWSKINKAKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRKTNTKVDTFLTS 710
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3AW34 ((OPT domain-containing protein {ECO:0000313|EMBL:GAV59900.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 469/554 (84.66%), Postives = 501/554 (90.43%), Query Frame = 0
Match: A0A1Q3AW34 ((OPT domain-containing protein {ECO:0000313|EMBL:GAV59900.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 469/554 (84.66%), Postives = 501/554 (90.43%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKPET-LPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS VA QSTEAN AQNIKNP+L WMIGFLFVVSFLGLFSVVPLRKIMIIDFKL YPSGTATAHLINSFHTPQGA+LAKKQV+ALG+FFSFSF WGFFQWFFT GD CGF FPTFGL+AY N+FFFDFSATYVGVGMICPYLIN+S+L+GA+LSWGIMWPLI+ RKG W+PADLS SSLHGLQGY+VFIAIAMILGDGLYNF KVLG TLFGL Q+ K T LPV S SLSYDD RRT +FLKDQIP WFA AGY+T+A++S AT+PHIFH LKWY++ VIYI AP LAFCNAYGCGLTDWSLASTYGKLAIFTIG WAGA+HGG+LAGLAACGVMMNIV+TASDLMQDFKTGY+TLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAF +LGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCL LCY+FFIAAIV+NAIRD VG KRA +IP+PMAMAIPFYLG YFAIDMCVGSLILFVWQK NK KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR TNAKVDAFL
Sbjct: 211 MSKSVADQSTEANDAQNIKNPELGWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGRFFSFSFLWGFFQWFFTGGDDCGFVNFPTFGLKAYENRFFFDFSATYVGVGMICPYLINISMLVGAVLSWGIMWPLIDARKGDWFPADLSPSSLHGLQGYRVFIAIAMILGDGLYNFFKVLGRTLFGLYHQVFKKDSHTILPVGNSSSHVNPPSLSYDDHRRTHLFLKDQIPKWFAFAGYITIAIISAATVPHIFHQLKWYYIVVIYIIAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGGWAGANHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFHDLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLTLCYIFFIAAIVINAIRDGVGTKRASFIPIPMAMAIPFYLGSYFAIDMCVGSLILFVWQKYNKAKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRVTNAKVDAFL 764
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WWX6 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHT49744.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 465/554 (83.94%), Postives = 506/554 (91.34%), Query Frame = 0
Match: A0A2G2WWX6 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHT49744.1}))
HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 465/554 (83.94%), Postives = 506/554 (91.34%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS++VAKQSTEANAA N+KNP L WMI FLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+AY NKF+FDFSATYVGVGMICPYLIN+SLL+G ILSWGIMWPLI+DRKGHWYPAD S SSLHG+QGY+VFIAIAMILGDGLYNF+KVLG TLFG+ Q R K+ LPV +S SLSYDD RT++FLKDQIPTW A+AGYVT+A+VS TLPHIFH LKWY++ VIYIFAP+LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAG++HGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMF+SQIIGTAMGCVISPCVFWLFYKAF NLGVPGSEYPAPYALVYRNM+ILGVEGFSALPKNCL LCYVFF+ AI +NA+RDAVGK +AKYIPLPMAMAIPFYLG YFAIDMC+GSLILF+W K+NK KADAFGPAVASGLICGDGIWTLPSSILAL+G+NPPICMKFLSR+ N KVD F+
Sbjct: 149 MSEVVAKQSTEANAADNVKNPSLGWMISFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFVNFPTFGLKAYENKFYFDFSATYVGVGMICPYLINISLLVGGILSWGIMWPLIQDRKGHWYPADQSPSSLHGIQGYRVFIAIAMILGDGLYNFIKVLGRTLFGIYCQFREKRAGSVLPVGV-RASPTDPSLSYDDLIRTELFLKDQIPTWVAIAGYVTIAIVSTITLPHIFHQLKWYYIIVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSAHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFISQIIGTAMGCVISPCVFWLFYKAFHNLGVPGSEYPAPYALVYRNMSILGVEGFSALPKNCLTLCYVFFLGAIAINAVRDAVGKDKAKYIPLPMAMAIPFYLGSYFAIDMCLGSLILFIWTKINKAKADAFGPAVASGLICGDGIWTLPSSILALSGVNPPICMKFLSRKNNIKVDKFM 701
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VJ81 ((Putative metal-nicotianamine transporter YSL7 {ECO:0000313|EMBL:KAB1211110.1}))
HSP 1 Score: 973.77 bits (2516), Expect = 0.000e+0
Identity = 467/556 (83.99%), Postives = 506/556 (91.01%), Query Frame = 0
Match: A0A6A1VJ81 ((Putative metal-nicotianamine transporter YSL7 {ECO:0000313|EMBL:KAB1211110.1}))
HSP 1 Score: 973.77 bits (2516), Expect = 0.000e+0
Identity = 467/556 (83.99%), Postives = 506/556 (91.01%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKPETLPVEAGDSSAE-TSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFLGS 555
MS+IVAKQSTEAN QN+K P L W+IGFLFVVSFLGLFSVVPLRKIM+IDFKLIYPSGTATAHLINSFHTPQGA+LAKKQV+ALGKFFSFSF WGFFQWFFTSGD+CGF FPTFGL+AY N+F+FDFSATYVGVGMICPYLINVSLL+GAILSWGIMWPLI+ RKG WYPADLS SSLHGLQGY+VFIAIAMILGDGLYNF KVL TLFGL R+ K+ T+ AG SS E SLSYDD RRTQ+FLKDQIP W ++ GYV++A++S ATLPHIF LKWY++ VIYI AP+LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGG+LAGLAACGVMMNIV+TASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGC ISPCVFWLFYKAF +LG+PGS+YPAPYALVYRNM+ILGVEGFSALPK+CL LCYVFF+ AIV+N IRDAVG+KRA +IPLPMAMAIPFYLG YFAIDMCVGSLILFVW K+NK KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR TN KVDAFL S
Sbjct: 146 MSEIVAKQSTEANDPQNMKAPALGWIIGFLFVVSFLGLFSVVPLRKIMVIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTSGDSCGFASFPTFGLKAYDNRFYFDFSATYVGVGMICPYLINVSLLVGAILSWGIMWPLIDARKGSWYPADLSPSSLHGLQGYRVFIAIAMILGDGLYNFFKVLSRTLFGLYREFSNKEKGTVLPLAGQSSPELPPSLSYDDRRRTQLFLKDQIPAWLSITGYVSIAIISAATLPHIFSQLKWYYIVVIYIVAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCFISPCVFWLFYKAFKDLGIPGSQYPAPYALVYRNMSILGVEGFSALPKHCLTLCYVFFVGAIVINGIRDAVGRKRASFIPLPMAMAIPFYLGSYFAIDMCVGSLILFVWGKINKAKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRATNNKVDAFLSS 701
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BYA2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547634.1}))
HSP 1 Score: 973 bits (2514), Expect = 0.000e+0
Identity = 463/556 (83.27%), Postives = 507/556 (91.19%), Query Frame = 0
Match: A0A5J5BYA2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547634.1}))
HSP 1 Score: 973 bits (2514), Expect = 0.000e+0
Identity = 463/556 (83.27%), Postives = 507/556 (91.19%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFLGS 555
MSD++AKQSTEAN AQNIKNP L WMIGFLF+VSFLGLFSVVPLRKIMI+DFKL YPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFG++A+ N+F+FDFSATYVGVGMICPY+IN+SLL+GA+LSWG+MWPLI+ RKGHWYPA+L SSSLHGLQGY+VFI IAMILGDGLYNFVKVLG TL GL Q R K LPV+ G S SS SYDD+RRT++FL+DQIPTWFAV GYV +A++S A LPHIF LKWY++ VIYIFAP LAFCNAYGCGLTDWSLASTYGKLAIF IGAWAGASHGG+LAGLAACGVMMNIV+TASDLMQDFKTGYMTLASPRSMFVSQ IGTAMGCVISPCVFWLF+KAF NLGV GSEYPAPYALVYRNMAILGVEGFS+LPK+CL LCY+FF AAIV+N I+DAVGKKRAKYIP+PMAMAIPFY+G YF IDMCVGSLILF+WQK+NK KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR+ N+KVDAFLGS
Sbjct: 149 MSDVIAKQSTEANDAQNIKNPTLAWMIGFLFIVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFVNFPTFGMKAFENRFYFDFSATYVGVGMICPYIINISLLVGAVLSWGLMWPLIDARKGHWYPAELKSSSLHGLQGYRVFIGIAMILGDGLYNFVKVLGITLVGLYHQTRDKDSGNVLPVD-GRPSPVNSSKSYDDQRRTELFLRDQIPTWFAVVGYVIIAIISAAVLPHIFPQLKWYYIVVIYIFAPTLAFCNAYGCGLTDWSLASTYGKLAIFVIGAWAGASHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQFIGTAMGCVISPCVFWLFFKAFRNLGVVGSEYPAPYALVYRNMAILGVEGFSSLPKHCLTLCYLFFFAAIVINGIKDAVGKKRAKYIPVPMAMAIPFYIGAYFTIDMCVGSLILFIWQKINKAKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRRKNSKVDAFLGS 703
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8GQM2 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHT82950.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 462/554 (83.39%), Postives = 504/554 (90.97%), Query Frame = 0
Match: A0A1U8GQM2 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHT82950.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 462/554 (83.39%), Postives = 504/554 (90.97%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS++VAKQSTEANAA N+KNP L WMI FLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+AY NKF+FDFSATYVGVGMICPYLIN+SLL+G ILSWGIMWPLI+DRKGHWYPAD S SSLHG+QGY+VFIAIAMILGDGLYNF+KVLG TL+G+ Q R K+ LPV +S SLSYDD RT++FLKDQIPTW A+AGYV +A+VS TLPHIFH LKWY++ VIYIFAP+LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAG++HGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMF+SQIIGTAMGCVISPCVFWLFYKAF NLGVPGSEYPAPYALVYRNM+ILGVEGFSALPKNCL LCYVFF+ AI +NA+RDAVGK +AKYIPLPMAMAIPFYLG YFAIDMC+GSLILF+W K+NK KADAFGPAVASGLICGDGIWTLPSSILAL+G+NPPICMKFLSR+ N KVD +
Sbjct: 155 MSEVVAKQSTEANAADNVKNPSLGWMISFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFINFPTFGLKAYENKFYFDFSATYVGVGMICPYLINISLLVGGILSWGIMWPLIQDRKGHWYPADQSPSSLHGIQGYRVFIAIAMILGDGLYNFIKVLGRTLYGIYCQFREKRAGSVLPVGV-RASPTDPSLSYDDLIRTELFLKDQIPTWIAIAGYVAIAIVSTITLPHIFHQLKWYYIIVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSAHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFISQIIGTAMGCVISPCVFWLFYKAFHNLGVPGSEYPAPYALVYRNMSILGVEGFSALPKNCLTLCYVFFLGAIAINAVRDAVGKDKAKYIPLPMAMAIPFYLGSYFAIDMCIGSLILFIWTKINKAKADAFGPAVASGLICGDGIWTLPSSILALSGVNPPICMKFLSRKNNIKVDKLM 707
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2ZLS5 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_016570414.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 462/554 (83.39%), Postives = 504/554 (90.97%), Query Frame = 0
Match: A0A2G2ZLS5 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_016570414.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 462/554 (83.39%), Postives = 504/554 (90.97%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS++VAKQSTEANAA N+KNP L WMI FLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+AY NKF+FDFSATYVGVGMICPYLIN+SLL+G ILSWGIMWPLI+DRKGHWYPAD S SSLHG+QGY+VFIAIAMILGDGLYNF+KVLG TL+G+ Q R K+ LPV +S SLSYDD RT++FLKDQIPTW A+AGYV +A+VS TLPHIFH LKWY++ VIYIFAP+LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAG++HGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMF+SQIIGTAMGCVISPCVFWLFYKAF NLGVPGSEYPAPYALVYRNM+ILGVEGFSALPKNCL LCYVFF+ AI +NA+RDAVGK +AKYIPLPMAMAIPFYLG YFAIDMC+GSLILF+W K+NK KADAFGPAVASGLICGDGIWTLPSSILAL+G+NPPICMKFLSR+ N KVD +
Sbjct: 155 MSEVVAKQSTEANAADNVKNPSLGWMISFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFINFPTFGLKAYENKFYFDFSATYVGVGMICPYLINISLLVGGILSWGIMWPLIQDRKGHWYPADQSPSSLHGIQGYRVFIAIAMILGDGLYNFIKVLGRTLYGIYCQFREKRAGSVLPVGV-RASPTDPSLSYDDLIRTELFLKDQIPTWIAIAGYVAIAIVSTITLPHIFHQLKWYYIIVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSAHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFISQIIGTAMGCVISPCVFWLFYKAFHNLGVPGSEYPAPYALVYRNMSILGVEGFSALPKNCLTLCYVFFLGAIAINAVRDAVGKDKAKYIPLPMAMAIPFYLGSYFAIDMCIGSLILFIWTKINKAKADAFGPAVASGLICGDGIWTLPSSILALSGVNPPICMKFLSRKNNIKVDKLM 707
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4AEK7 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_016475071.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 463/554 (83.57%), Postives = 506/554 (91.34%), Query Frame = 0
Match: A0A1S4AEK7 ((probable metal-nicotianamine transporter YSL7 {ECO:0000313|RefSeq:XP_016475071.1}))
HSP 1 Score: 972.23 bits (2512), Expect = 0.000e+0
Identity = 463/554 (83.57%), Postives = 506/554 (91.34%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS+++AKQS E NAA NIKNP L WMI FLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+AY N+F+FDFSATYVGVGMICPYLIN+SLL+GAILSWGIMWPLI+DRKGHWYPA+ S SSLHG+QGY+VFIAIAMILGDGLYNF KVLG TL+G+ QIR K+ LPV A S E SLSYDD+ RT++FLKDQIPTW A+AGYV++A+VS TLPHIFH LKWY++ VIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIG WAGA+HGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMF+SQIIGTAMGCVISPCVFWLFYKAF +LGVPGSEYPAPYALVYRNM+ILGVEGFSALPKNCL LCYVFF+ AI +NA+RDAVGK +AKYIPLPMAMAIPFYLG YFAIDMC+GSLILFVW K++K KADAFGPAVASGLICGDGIWTLPSSILALAG+NPPICMKFLSR+ N +VD F+
Sbjct: 158 MSEVIAKQSNEDNAADNIKNPSLGWMISFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFVNFPTFGLKAYENRFYFDFSATYVGVGMICPYLINISLLVGAILSWGIMWPLIQDRKGHWYPANQSDSSLHGIQGYRVFIAIAMILGDGLYNFCKVLGRTLYGIYFQIREKRAGSVLPVGARGSPIE-PSLSYDDQIRTELFLKDQIPTWVAIAGYVSIAIVSTVTLPHIFHQLKWYYIVVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGTWAGAAHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFISQIIGTAMGCVISPCVFWLFYKAFHDLGVPGSEYPAPYALVYRNMSILGVEGFSALPKNCLTLCYVFFLGAIAINALRDAVGKNKAKYIPLPMAMAIPFYLGSYFAIDMCLGSLILFVWTKIDKVKADAFGPAVASGLICGDGIWTLPSSILALAGVNPPICMKFLSRKDNIRVDGFI 710
BLAST of XM_017369008.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CKD1 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHU19175.1}))
HSP 1 Score: 971.459 bits (2510), Expect = 0.000e+0
Identity = 463/554 (83.57%), Postives = 505/554 (91.16%), Query Frame = 0
Match: A0A2G3CKD1 ((Putative metal-nicotianamine transporter YSL5 {ECO:0000313|EMBL:PHU19175.1}))
HSP 1 Score: 971.459 bits (2510), Expect = 0.000e+0
Identity = 463/554 (83.57%), Postives = 505/554 (91.16%), Query Frame = 0
Query: 1 MSDIVAKQSTEANAAQNIKNPQLHWMIGFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGARLAKKQVKALGKFFSFSFAWGFFQWFFTSGDACGFKEFPTFGLEAYRNKFFFDFSATYVGVGMICPYLINVSLLLGAILSWGIMWPLIEDRKGHWYPADLSSSSLHGLQGYKVFIAIAMILGDGLYNFVKVLGHTLFGLSRQIRTKKP-ETLPVEAGDSSAETSSLSYDDERRTQMFLKDQIPTWFAVAGYVTVAVVSIATLPHIFHHLKWYHVAVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGILAGLAACGVMMNIVATASDLMQDFKTGYMTLASPRSMFVSQIIGTAMGCVISPCVFWLFYKAFDNLGVPGSEYPAPYALVYRNMAILGVEGFSALPKNCLKLCYVFFIAAIVVNAIRDAVGKKRAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGINPPICMKFLSRQTNAKVDAFL 553
MS++VAKQSTEANAA N+KNP L WMI FLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGA+LAKKQVKALGKFFSFSF WGFFQWFFT+GD CGF FPTFGL+AY NKF+FDFS TYVGVGMICPYLIN+SLL+G ILSWGIMWPLI+DRKGHWYPAD S SSLHG+QGY+VFIAIAMILGDGLYNF+KVLG TL+G+ Q R K+ LPV +S SLSYDD RT++FLKDQIPTW A+AGYVT+A+VS TLPHIFH LKWY++ VIYIFAP+LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAG++HGG+LAGLAACGVMMNIV+TASDL QDFKTGYMTLASPRSMF+SQIIGTAMGCVISPCVFWLFYKAF NLGVPGSEYPAPYALVYRNM+ILGVEGFSALPKNCL LCYVFF+ AI +NA+RDAVGK +AKYIPLPMAMAIPFYLG YFAIDMC+GSLILF+W K+NK KADAFGPAVASGLICGDGIWTLPSSILAL+G+NPPICMKFLSR+ N KVD F+
Sbjct: 73 MSEVVAKQSTEANAADNVKNPSLGWMISFLFVVSFLGLFSVVPLRKIMIIDFKLIYPSGTATAHLINSFHTPQGAKLAKKQVKALGKFFSFSFLWGFFQWFFTAGDGCGFINFPTFGLKAYENKFYFDFSTTYVGVGMICPYLINISLLVGGILSWGIMWPLIQDRKGHWYPADQSPSSLHGIQGYRVFIAIAMILGDGLYNFIKVLGRTLYGIYCQFREKRAGSVLPVGV-RASPTDPSLSYDDLIRTELFLKDQIPTWIAIAGYVTIAIVSTITLPHIFHQLKWYYIIVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSAHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYMTLASPRSMFISQIIGTAMGCVISPCVFWLFYKAFHNLGVPGSEYPAPYALVYRNMSILGVEGFSALPKNCLTLCYVFFLGAIAINAVRDAVGKDKAKYIPLPMAMAIPFYLGSYFAIDMCIGSLILFIWTKINKAKADAFGPAVASGLICGDGIWTLPSSILALSGVNPPICMKFLSRKNNIKVDKFM 625
| Match Name | Stats | Description |
|---|---|---|
| A0A2I4FTH2 | E-Value: 0.000e+0, PID: 84.71 | (probable metal-nicotianamine transporter YSL7 {EC... [more] |
| A0A2R6Q298 | E-Value: 0.000e+0, PID: 82.70 | (Metal-nicotianamine transporter like {ECO:0000313... [more] |
| A0A1Q3AW34 | E-Value: 0.000e+0, PID: 84.66 | (OPT domain-containing protein {ECO:0000313|EMBL:G... [more] |
| A0A2G2WWX6 | E-Value: 0.000e+0, PID: 83.94 | (Putative metal-nicotianamine transporter YSL5 {EC... [more] |
| A0A6A1VJ81 | E-Value: 0.000e+0, PID: 83.99 | (Putative metal-nicotianamine transporter YSL7 {EC... [more] |
| A0A5J5BYA2 | E-Value: 0.000e+0, PID: 83.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A1U8GQM2 | E-Value: 0.000e+0, PID: 83.39 | (Putative metal-nicotianamine transporter YSL5 {EC... [more] |
| A0A2G2ZLS5 | E-Value: 0.000e+0, PID: 83.39 | (probable metal-nicotianamine transporter YSL7 {EC... [more] |
| A0A1S4AEK7 | E-Value: 0.000e+0, PID: 83.57 | (probable metal-nicotianamine transporter YSL7 {EC... [more] |
| A0A2G3CKD1 | E-Value: 0.000e+0, PID: 83.57 | (Putative metal-nicotianamine transporter YSL5 {EC... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |