XM_017374077.1

Resource Type: 
Polypeptide
Name: 
XM_017374077.1
Identifier: 
XM_017374077.1-protein
Sequence: 
MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGAVSSISLRQDS
LSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRS
CGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSG
TNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLS
TVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAV
SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIV
SEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRN
ITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVF
LENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLA
TPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGK
TKSQTRSARTNGEQDNKAVARTSDNQIDVKGGPSDAKTKEKSSSDSKVKA
NSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGE
ISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSK
RKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEG
MPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSAGATPADK
Sequence Length: 
743
Sequence Checksum: 
a50009c51f5a9e249669b80bb61cdf53
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017374077.1, derives from mRNA, XM_017374077.1.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C933 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77672.1}))

HSP 1 Score: 972.615 bits (2513), Expect = 0.000e+0
Identity = 500/751 (66.58%), Postives = 590/751 (78.56%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGP---SDAKTKEKSSSDSK--------VKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNA--PVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN--SSISNSKQ-AERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 733
            M    +LQLS +LG+ +NH S+++F+     S +++LL A +SS++L++DS SI LS+ +++ + + P + N F C+S LN G +  ISS+KN A  L RS  ALQG  +V KLVPA+ I++FAVWGLGP+MR SR+IFLHKSD SW KS   YV+TSYLQP+LLWTG TLICR LDPVVL SEAS++VKQRLLNFVRSLSTVLA AYC+SSVIQQ QK+FMET++P D+RN+ FQFAGKA+YTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDV+KINNIVADMRKVLAKNPQVEQQ+LHRRVFLEN+N ENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+YGD+DL+++PFADS FTRG A +NRP LLIEP  K+NGE +TK  TRS RTNGEQD+KA AR T D++ D KGG    SD+K KE   SDSK         KA++ AG VP+ D+K+        + D K GDKV  K  SKS +K  SK  E+SSS+S     VS N  +N S    PK   L  A QN  +++PSA++ E+  +K    SS S SKQ +ERL     P SRP  EENIVLGVAL+GSKRTLPIEEGM PS T  EVKELATSR+G+ S   +KDKKD Q
Sbjct:    1 MAFSGSLQLSHELGICKNHGSNKQFRNV-MGSHKLRLLSANLSSLALQRDSWSIHLSNSVYRPIRSVPSRCNMFKCNSFLNPGRAFEISSIKNAAIALKRSYNALQGSPLVLKLVPAVGIIVFAVWGLGPLMRQSRSIFLHKSDSSWRKSSMYYVMTSYLQPLLLWTGVTLICRVLDPVVLTSEASQIVKQRLLNFVRSLSTVLALAYCLSSVIQQAQKFFMETNDPTDTRNMSFQFAGKAMYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENINSENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTMQKIYGDSDLENIPFADSTFTRGGAASNRPFLLIEPPYKINGEDRTK--TRSVRTNGEQDSKAAARPTPDSKADAKGGAALTSDSKAKEVPISDSKAREMPSSHTKADAKAGEVPNADTKEGH-IAATSISDPKLGDKVTVKSTSKSASKIDSKFAEVSSSDSKTIHTVSDNSNQNISNNNTPKKVGLGDARQNSTIDDPSASLSESGGKKPGKFSSTSQSKQESERLPVTQPPTSRPALEENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELATSRNGNGSPAAEKDKKDTQ 747    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJ22 ((Mechanosensitive ion channel protein {ECO:0000313|EMBL:PSS30027.1}))

HSP 1 Score: 948.732 bits (2451), Expect = 0.000e+0
Identity = 485/739 (65.63%), Postives = 564/739 (76.32%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLG-AVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTS-DNQIDVKGG-PSDAKTKEK-SSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAP--VSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 733
            M  G +LQ+S +LG+ +NH  +++F      SG++ LL  ++SS++LR D  SI LS RL++     PYK N F CHS LN G +  IS +KN A   TRSC A QG  +V KLV A+ I+ FAVWGLGP+MR SRN+FLHKSD SW KSGT YV TSYLQP+LLWTGATLICR LDP+VLPSEAS++VKQRLL+F+RSLS VLA AYC+SSVIQQ QKYFMET++  D RN+GFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVE ++LHRRVFLEN+NPENQAL+ILISCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y D DLD++PF+DS+FTRG A +NRPLLLIEP  K+NGE +TK Q RS RTNG+QD KA AR   D +ID KGG P   ++K K ++SD+K+  +  AG   +PD+K D         D   GDK   K  S + +K  SK  E+SSS+S A    S  +T NN   K  K   L +  QN  V  PSA+  ET   K + S S  +  +       P SRP   ENIVLGVAL+GSKRTLPIEEGM PS T  EVKELA  R+G+ S   +KDKK++Q
Sbjct:    1 MAVGGSLQISLELGICKNHGCNKQFMNV-TRSGKLHLLKPSLSSLALRPDPWSIRLSGRLYRPKCPIPYKCNMFKCHSFLNPGKASEISCMKNAATAFTRSCNAFQGSPIVLKLVSAVGIIAFAVWGLGPLMRQSRNVFLHKSDSSWKKSGTYYVTTSYLQPLLLWTGATLICRVLDPMVLPSEASQIVKQRLLSFIRSLSAVLALAYCLSSVIQQAQKYFMETNDSTDPRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENINPENQALLILISCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDPDLDNIPFSDSLFTRGGAASNRPLLLIEPPYKINGEDRTKPQNRSVRTNGDQDGKAAARPPHDGKIDAKGGAPPIPQSKAKETTSDTKI--DVKAGETQNPDTKGDNTVR-TSTSDRTIGDKEMVKPTSNNASKTDSKFAEVSSSDSKAAGSTSTQITSNN---KHTKKTGLGNTQQNGTVNIPSASSSETGGEKPDESPSTPQAKQESERPQQPISRPPLGENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELAQFRNGNGSLAAEKDKKESQ 732    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CE39 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77673.1}))

HSP 1 Score: 924.465 bits (2388), Expect = 0.000e+0
Identity = 480/752 (63.83%), Postives = 571/752 (75.93%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLH-KSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGP---SDAKTKEKSSSDSK--------VKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNA--PVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN--SSISNSKQ-AERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 733
            M    +L LS +LG++ N+  + +  +     G + L    +SS +LRQD+ S+ L + +   +     + N F C S L       +  L+  A  +TRS  AL G  +V +LVPA+ ++ FA+WGLGP+MRLSR +FLH KSD SW KSGT+YV+TSYLQP+LLWTGA LICR LDPV+LPSEA++ VKQRLLNFVRSLSTVLAF YC+SS+IQQTQK+FMET++  D+RN+GFQFAGK +Y+AVWVA+VSLFMELLGFSTQKWLTAG LGTVLLTLAGREIFTNFLSSVMI ATRPFIV+EWI+TKIEGYEVSGTVEHVGWWSPTI+RGDDREA+HIPNHKFT+NVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLEN+N ENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+YGD+DL+++PFADS FTRG A +NRP LLIEP  K+NGE +TK  TRS RTNGEQD+KA AR T D++ D KGG    SD+K KE   SDSK         KA++ AG VP+ D+K+        + D K GDKV  K  SKS +K  SK  E+SSS+S     VS N  +N S    PK   L  A QN  +++PSA++ E+  +K    SS S SKQ +ERL     P SRP  EENIVLGVAL+GSKRTLPIEEGM PS T  EVKELATSR+G+ S   +KDKKD Q
Sbjct:    2 MAVAGSLLLSRELGIHSNYGYNNQ-PKCMIGKGCLHLFSTTLSSHALRQDASSLLLLNSVRGPISPLSSRCNVFQCRSFLTPSGGNEVPVLRTAATVMTRSYNALHGNPIVLQLVPAVGLVAFAMWGLGPLMRLSRILFLHQKSDSSWKKSGTHYVMTSYLQPLLLWTGAILICRVLDPVILPSEATQAVKQRLLNFVRSLSTVLAFTYCLSSLIQQTQKFFMETNDSGDARNMGFQFAGKTIYSAVWVASVSLFMELLGFSTQKWLTAGSLGTVLLTLAGREIFTNFLSSVMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTMNVVRNLSQKAHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENINSENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTMQKIYGDSDLENIPFADSTFTRGGAASNRPFLLIEPPYKINGEDRTK--TRSVRTNGEQDSKAAARPTPDSKADAKGGAALTSDSKAKEVPISDSKAREMPSSHTKADAKAGEVPNADTKEGH-IAATSISDPKLGDKVTVKSTSKSASKIDSKFAEVSSSDSKTIHTVSDNSNQNISNNNTPKKVGLGDARQNSTIDDPSASLSESGGKKPGKFSSTSQSKQESERLPVTQPPTSRPALEENIVLGVALEGSKRTLPIEEGMAPSPTQAEVKELATSRNGNGSPAAEKDKKDTQ 749    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RE24 ((Mechanosensitive ion channel protein {ECO:0000313|EMBL:PSS26801.1}))

HSP 1 Score: 900.197 bits (2325), Expect = 0.000e+0
Identity = 461/736 (62.64%), Postives = 544/736 (73.91%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLG-AVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVART-SDNQIDVKGG-PSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 733
            M  G +LQ++ +LG+ + H  + +F  S   SG++ LL  ++S ++LR D  SI LS + ++     PYKRN   CHS LN      IS +KN A   TRSC A QG  +V KLV A+ I++FAVWGLGP+M   RN+FLHKSD SW KSGT YV TSYLQP LLWTGATLICR LDP+VLPSEAS++VKQRLL F+RSLS VLA AYC+SS+IQQ QK+FMET+   D RN+GFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVE ++LHRRVFLEN+N ENQAL+ILISCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y D DLD++PF+DS FT G A +NRPLLLIEP  K+NGE +TK Q RS RTNGEQD+K   R+  D + D KGG P   ++K K ++ S+ K +  AG   + D+K D         D   GDK   K  S S+A+   K  E+SSS S A  S ++   ++ K+  K G   +  QN  V  PSA+  ET   K +      +  +       P SRP   ENIVLGVAL+GSKRTLPIEEGM  +++  EVKELA  ++G+ S   +KDK D Q
Sbjct:    1 MAVGGSLQITNELGICKTHVCNIQFL-SMTQSGKLHLLKPSLSPLALRLDPWSIRLSGKEYRPKCPIPYKRNVVKCHSFLNPSKGFEISCMKNAAIAFTRSCNAFQGSPIVLKLVSAVGIIVFAVWGLGPLMHQCRNMFLHKSDSSWKKSGTYYVTTSYLQPFLLWTGATLICRVLDPIVLPSEASQIVKQRLLGFIRSLSAVLALAYCLSSIIQQAQKFFMETNASTDPRNMGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEHKRLHRRVFLENINSENQALLILISCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDPDLDNIPFSDSFFTHGGAASNRPLLLIEPPYKINGEDRTKPQNRSVRTNGEQDSKTAVRSPPDGKTDSKGGAPPIPQSKAKETT-SETKIDVKAGETQNLDTKGDNTAR-TSTSDRTMGDKEMAKPTSNSSAQTDYKFSEVSSSESKAVGSTSIQSTSNNKQTKKTGS-GNGQQNSTVNIPSASFSETGGEKPDEFPLTPQAKQESERPQQPISRPPLGENIVLGVALEGSKRTLPIEEGM--ASSHAEVKELAQFQNGNGSLAAEKDKNDGQ 730    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZFB5 ((mechanosensitive ion channel protein 2, chloroplastic {ECO:0000313|RefSeq:XP_021273616.1}))

HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 456/753 (60.56%), Postives = 563/753 (74.77%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGAV---SSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPAD-SRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVARTS-DNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANS---SISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELAT-SRSGSASSTVDKDKKDNQ-NSAGATPADK 743
            M    +LQLS  LG+ RN   +++F+     S ++ LL A     S+ L+QDS  I LSD L++ +H+ PY+ N F CH+    G    +  +K  +  +TRS   LQG  +VFKLVPA  I++FA+WG+ P++R SR++  HKSD SW KS T+Y+ TSY+QP+LLWTGA LICR LDP+VLPSEAS++VKQRLLNFVRSLSTVLAFAYC+SS+IQQ QK+FMETS+  D +RN+GFQFAGKA+Y+AVW+AAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQ+L+IL+SCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+Y DAD +++PFADSV++ G  P+NRPLLLIEPS K+NGE +TK   RS+R  GEQD+K  AR S D + D  G      +K K +   + KA++  G  P+ D+K+D K       D K  DKV  K  SKS  K  S   E  S +    V  ++++N+   K+  + + K+A Q+  ++NPS + P+T   KA      + + +  ERL     P +RPV EENIVLGVAL GSKRTLPIEEGM PS    + KE+A+ SR+G+ S+   +DKKD Q  S+ +TP ++
Sbjct:    1 MSLAGSLQLSHDLGLCRNQGYNKKFKSVLGRS-KLHLLSATLSSHSLVLQQDSWRIHLSDSLYRPIHSVPYRNNAFRCHAFQVPGQIFELPGVKAVSVAVTRSYNILQGSPLVFKLVPAFGIIIFALWGVAPLIRQSRSLLFHKSDNSWKKSRTHYITTSYIQPLLLWTGAILICRTLDPLVLPSEASQVVKQRLLNFVRSLSTVLAFAYCLSSMIQQLQKFFMETSKTTDDTRNMGFQFAGKAIYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQSLLILVSCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYSDADWENIPFADSVYSHGGVPSNRPLLLIEPSYKINGEDRTKG--RSSRPAGEQDSKTTARPSADTKADKAGATPKPDSKAKGAPSIEPKADAKIGETPNSDTKEDLKAAFASTSDLKTDDKVAMKSPSKSVPKTSSNATETYSPDQK--VLDSISDNSPQNKKVTDKQQKNARQSSKLDNPSVSSPDTGIDKAGGLREPLQSKQDGERLPVSQPPIARPVLEENIVLGVALGGSKRTLPIEEGMTPSPA--DAKEMASASRNGTGSTA--EDKKDGQVRSSPSTPDEQ 744    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TK15 ((mechanosensitive ion channel protein 2, chloroplastic-like {ECO:0000313|RefSeq:XP_027078400.1, ECO:0000313|RefSeq:XP_027078401.1}))

HSP 1 Score: 890.952 bits (2301), Expect = 0.000e+0
Identity = 462/756 (61.11%), Postives = 555/756 (73.41%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGAVSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNK-VNGEGKTKSQTRSARTNGEQDNKA-VARTSDNQIDVKGGP---SDAKTKE------KSSSDSKVKANSSAGVVPDPDSKKD-QKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRK--ANSSISNSKQAERLTAVDIPAS-RPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSAGATPA 741
            M    +LQLS +LG+ RNH  +++            L    +S+ LR++S +  LS RL  + ++ PYK   F C+S L+ G S  IS++KN A  LTRSC  LQG  +V KLVPA+ +++FA+WGLGP+M+ SRNIFLHKSD SW KS T YV+TSYLQP+LLWTGA L+CRALDPVVLP+EAS +VKQRLLNFVRSLSTVLAFAYC++SVIQQ QK+FMET+EPADSRN+GFQFAGKAVYTAVWVAA SLFMELLGFSTQK+LTAGGLGTVL+TLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTI+RGDDREA+HIPNHKFTVNVVRN++QK+HWRIKTHL ISHLDVNKIN+IVADMRKVLAKNPQVEQQKLHRRVFLEN+NPENQAL+I +SCFVKTS FEEYLCVKETI+LDLLRVI HHRARLATPIRTVQK+Y DAD++++P+ DS F R  AP  RPLL IEP  K +NGE + K+  RS R +G +D KA V R  D + + +GG    SD+K+KE      K +S + ++A++  G + +PDSK+   K E  P  D K  DK   K  S  T K+ SK  E+ + +S  P    +    S K QP    ++  P      N S  +PE    K    SS    KQ +       P+S +PV EENIVLGVAL+GSKRTLPIEEGM     S E+KELA   SG+ +  VDKDKK+ Q S  +  A
Sbjct:    1 MAAAGSLQLSHELGICRNHVCNKQLLNVTGGCKTYFLGSNFTSLILRRNSWTPQLSTRLRWQTNSLPYKYYQFKCYSSLSPGPSFDISTVKNVALTLTRSCNNLQGSALVNKLVPAVGLVIFALWGLGPLMQQSRNIFLHKSDNSWQKSSTCYVLTSYLQPLLLWTGALLVCRALDPVVLPTEASRIVKQRLLNFVRSLSTVLAFAYCLTSVIQQAQKFFMETNEPADSRNMGFQFAGKAVYTAVWVAAASLFMELLGFSTQKYLTAGGLGTVLITLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLGISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLENINPENQALLIFVSCFVKTSHFEEYLCVKETIMLDLLRVIRHHRARLATPIRTVQKIYNDADMENIPYGDSFFDRETAP-KRPLLFIEPPYKIINGEERKKTDGRSVRGSGGEDGKATVRRIPDTKAEGRGGTNQGSDSKSKETPSFKAKETSATDLQADTKVGEMSNPDSKEGVSKVEAKPSADPKVSDKFQVKTSSAGT-KSESKSTELPTVDSKMPADGKI----SNKSQPAKA-VQGGPMGNAAGNTSTNLPEHGGEKPATTSSTKQLKQEDDRPPHSQPSSTKPVMEENIVLGVALEGSKRTLPIEEGMVSQPNSSELKELAKCHSGNGTPLVDKDKKEIQQSESSKSA 749    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QUN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8010516.1}))

HSP 1 Score: 889.797 bits (2298), Expect = 0.000e+0
Identity = 457/750 (60.93%), Postives = 556/750 (74.13%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGAV--SSISL-RQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-TSDNQIDVKGGPS---DAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSN--APVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKANSSISNSKQAERLTA-VDIPA-SRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNSAGAT 739
            M   C LQLSP+LG+  N   +++++ S    G++ LL A   S +S  RQ+S S CL D  ++ +H+ P + N F C S L  G    + S K  A  LT S   L+G  +V KLVPA+ I++FAVWG+GP++R SRN+ LHK+D SW KS T YV+TSYLQP+LLWTGA LICRALDPVVLP+EAS++VKQRLLNFVRSLSTVLA AYC+SS+IQQ QK+  ET++ +D+RN+GFQFAGKAVY+AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QKSHWRIKTHLAISHLDVNKIN+IVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQAL+IL+SCFVKTS FEEYLCVKE ILLDLLRVISHHRARLATPIRTVQK+YGD DL+++PFAD++F R    +NRPLL+IEP N++NGE K K+  RS R   EQD+K   R T DN+ D K  P+   D KTKE  +SD+  K ++  G  P+PD K + K   + V D K  +    K  SK  +K  SK  E+  S+      VS N T+  S  KQPK+    +  Q     + S++     K      I + ++ ER+ A V  P+ +RP+ E+NIVLGVAL+GSKRTLPI+EGM    +  E KE+A SR+G+ S T +KDKKD     G +
Sbjct:    1 MALACYLQLSPELGLCGNQRCNKQYK-SVIGRGKLHLLSATLSSRVSFQRQESWSFCLLDTAYRPIHSLPSRFNAFKCCSFLRPGQPFQLPSTKTVAMALTGSYNVLEGSPLVLKLVPAVGIIIFAVWGIGPLLRQSRNVLLHKNDNSWKKSRTYYVMTSYLQPLLLWTGAALICRALDPVVLPTEASQVVKQRLLNFVRSLSTVLALAYCLSSMIQQAQKFVTETNDSSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVNKINSIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGDTDLENVPFADTIFNRSEVASNRPLLMIEPPNRINGEDKIKN--RSVRATAEQDSKTSVRPTPDNKGDAKVEPTSVLDHKTKETPTSDT--KGDNKIGETPNPDPKAELKSAAVSVSDPKGYENATTKPTSKPVSKTNSKGAEMPFSDPKGMGSVSDNSTQKVSDGKQPKSASFGNVTQKSRSPSVSSSEGSVDK----PIIQSRQEGERMPAPVAQPSTTRPILEDNIVLGVALEGSKRTLPIDEGMVTPPSHAEGKEMAASRNGNGSPTSEKDKKDGHVPTGPS 741    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DHM1 ((MSCS-like 2 {ECO:0000313|EMBL:EOX91945.1}))

HSP 1 Score: 885.56 bits (2287), Expect = 0.000e+0
Identity = 454/755 (60.13%), Postives = 560/755 (74.17%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVK--LLGAV---SSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPAD-SRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVART-SDNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLSKSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN---SSISNSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELAT-SRSGSASSTVDKDKKDNQ-NSAGATPADK 743
            M    +LQLS  LG+ RN   +++F+   +  GR K  LL A     S+ L+QDS  I LSD L++ +H+ PY+ N F CH+    G    +  +K  +  +TRS   LQG  +VFKLVPA +I++FA+WG+ P++R  R++  HKSD SW KS T ++ TSY QP+LLWTGA LICR LDP+VLPSEAS++VKQRLLNFVRSLSTVLAFAYC+SS+IQQ QK+FMET+E  D +RN+GFQFAGKA+Y+AVW+AAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN++QK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFLENVNPENQAL+IL+SCFVKTS  EEYLCVKE ILLDLLRVISHHRARLATPIRT+QK+Y DADL+++PFADSV++ G  P+NRPLLLIEPS K+NGE + K   RS+R  GEQD+K  AR  +D + D  G      +K K +   + KA++  G  P+ D+K+D K       D K  DKV  K  SKS  K  S   E  S +    V  ++++N    K   + + K A Q+  ++NPS + P+    KA      + + ++ E+L     P +RPV EENIVLGVAL+GSKRTLPIEEGM PS    + KE+A+ SR+GS S+   +DKKD Q  S+ +TP ++
Sbjct:    1 MSLAGSLQLSHDLGLCRNQGYNKKFK---SVMGRSKPHLLSATLSSRSLVLQQDSWRIRLSDSLYRPIHSVPYRNNAFRCHAFRVPGQIFELPGVKAVSVAVTRSYNILQGSPLVFKLVPAFSIIIFALWGVAPLIRQGRSLLFHKSDNSWKKSRTLFITTSYFQPLLLWTGAILICRTLDPLVLPSEASQVVKQRLLNFVRSLSTVLAFAYCLSSMIQQLQKFFMETNETTDDTRNMGFQFAGKAIYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILVSCFVKTSHLEEYLCVKEAILLDLLRVISHHRARLATPIRTLQKIYSDADLENIPFADSVYSHGGVPSNRPLLLIEPSYKINGEDRIKG--RSSRPAGEQDSKTTARPRADTKADKAGATQKPDSKAKGAPSIEPKADAKIGETPNSDTKEDLKVAFASTSDLKTDDKVAMKSPSKSVPKKSSNAIETYSPDQK--VLDSISDNLPQNKMVTDKQQKIARQSSKLDNPSGSSPDAGVDKAGGLREPLQSKQEGEKLPVTQPPIARPVLEENIVLGVALEGSKRTLPIEEGMTPSPA--DAKEIASASRNGSGSTA--EDKKDGQVRSSPSTPDEQ 744    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UNM4 ((mechanosensitive ion channel protein 2, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_011099985.1}))

HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 456/747 (61.04%), Postives = 556/747 (74.43%), Query Frame = 0
 
Query:    1 MGTGCTLQLSPQLGMYRNHPSSREFQQSWAASGRVKLLGA-VSSISLRQDSLSICLSDRLHKRVHAAPYKRNHFTCHSLLNLGHSLHISSLKNTAAELTRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKA-VARTSDNQIDVKGGPSDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGDKVGDKVLS--------KSTAKAVSKIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKA-NSSIS-NSKQAERLTAVDIPASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQNS 735
            M    +LQLS +LG+ RNH   +  + + +A  ++  L + + SISL+Q S S   S R+H+RV   P + + F CH  LN G SL  + +KN    L RS   LQG  +V KL  A+ IL+FAVWGLGP++RLSRNIF+ KSD +W KS T  V TSY+QP+LLWTGA  ICRALDP+ LP+EA ++VKQRLLNFVRSLSTVLAFAYC+SSVIQQ QK+FME+++P D+RN+GFQFAG+AVY+AVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDV+KINNIVADMRKVLAKNPQVEQQKLHRRVFL+N+NPENQALMIL+SCFVKTS FEEYLCVKE ILLDLLRVI HHRARLATPIRTVQK++ DADLD +PF+DS+F+RG A TNRPLLL+EPS KVNG  K+KSQ RSAR +GE+++KA V  TSDN++D K      +  +  ++D   K   ++      D+K D +F   P  +TK+  K+  K+ S        K  ++  +K+ E +S ++N   S   T N S KKQ         PQ +  E  S +  E   R++ N S+S +SKQ  +  A   PAS+   EENIVLGVAL+GSKRTLPIEE   P+   ++VKELA  RSG+  +  +KDK D + S
Sbjct:    1 MAVSGSLQLSLELGICRNHGRIKRLRVNSSARDKLCTLSSTLPSISLQQFSWSSNFSKRIHRRVCTIPCRNHQFRCHCFLNPGPSLDANIIKNATLTLARSINRLQGSPIVIKLASAVGILIFAVWGLGPLVRLSRNIFMQKSDSNWKKSSTYQVTTSYIQPLLLWTGAIFICRALDPMALPTEAGQIVKQRLLNFVRSLSTVLAFAYCLSSVIQQVQKFFMESNDPTDTRNMGFQFAGRAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVIRHHRARLATPIRTVQKIFTDADLDGVPFSDSMFSRG-AVTNRPLLLVEPSYKVNGADKSKSQARSARASGEEESKATVKSTSDNKVDAKDETILNRDSKSRATDHMPKEMQTS------DAKADSQFAQTPKVETKEDPKIAAKIPSDPNLNNSTKPASRTDTKLLEETSPDANN--SSGPTYNTSAKKQ---------PQKVGQETTSVSASELGPRRSDNVSLSMHSKQDIKQPAPQTPASKQSLEENIVLGVALEGSKRTLPIEEETVPTLNPEDVKELAALRSGNGPAVAEKDKNDIKKS 729    
BLAST of XM_017374077.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BUJ3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546705.1}))

HSP 1 Score: 884.019 bits (2283), Expect = 0.000e+0
Identity = 454/663 (68.48%), Postives = 518/663 (78.13%), Query Frame = 0
 
Query:   98 TRSCGALQGKHVVFKLVPAITILLFAVWGLGPVMRLSRNIFLHKSDKSWNKSGTNYVVTSYLQPILLWTGATLICRALDPVVLPSEASELVKQRLLNFVRSLSTVLAFAYCISSVIQQTQKYFMETSEPADSRNVGFQFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIQATRPFIVSEWIKTKIEGYEVSGTVEHVGWWSPTIVRGDDREAIHIPNHKFTVNVVRNITQKSHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSRFEEYLCVKETILLDLLRVISHHRARLATPIRTVQKMYGDADLDSMPFADSVFTRGRAPTNRPLLLIEPSNKVNGEGKTKSQTRSARTNGEQDNKAVAR-----------TSDNQIDVKGGP---SDAKTKEKSSSDSKVKANSSAGVVPDPDSKKDQKFEGMPVYDTKQGD--------KVGDKVLSKSTAKAVS--KIGEISSSNSNAPVSKNVTENNSTKKQPKNGELKSAPQNIVVENPSAAVPETSKRKAN--SSISNSKQAERLTAVDIP-ASRPVSEENIVLGVALDGSKRTLPIEEGMPPSATSKEVKELATSRSGSASSTVDKDKKDNQ 733
            TRS  ALQG   + KLVPA+ I++FAVWGLGP++R SR+IFLHKSD SW KS   YV+TSYLQP+LLWTGA LICR LDPVVL SEAS++VKQRLLNFVRSLSTVLA AYC+SSVIQQTQK+FMET++P D+RN+GFQFAGKA+YTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS MI ATRPF+V+EWI+TKIEGYEVSGTVEHVGWWSPTIVRG+DREA+HIPNHKFTVNVVRN+TQK+HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQ+LHRRVFL+N+N ENQAL+IL+SCFVKTS FEEYLCVKETILLDLLRVISHHRARLATPIRT+QK+Y D+DLD++PFADS FTRG A  NRP LLIEP  K+NGE KTK  TRS RTNGEQD+KA AR           T D++ D KGG    SD K KE  +SDSK K   S+       +K D K   MP  DTK+G         K GDKV S S + +    K  E+S+   +  +++N++ N+     PK   L  A QN  +  PSA++ E    K    SS S SKQ+ERL     P +SRP  EENIVLGVAL+GSKRTLPIEEGM    T  EVKELATSR+G+ S   +KDKKD+Q
Sbjct:   11 TRSYNALQGSPFILKLVPAVGIIVFAVWGLGPLIRESRSIFLHKSDSSWRKSSAYYVMTSYLQPLLLWTGAILICRVLDPVVLHSEASQIVKQRLLNFVRSLSTVLALAYCLSSVIQQTQKFFMETNDPTDTRNMGFQFAGKAMYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINVENQALLILVSCFVKTSHFEEYLCVKETILLDLLRVISHHRARLATPIRTMQKIYSDSDLDNIPFADSTFTRGGAAPNRPFLLIEPHYKINGEDKTK--TRSVRTNGEQDSKAAARPTPDSKAAARPTPDSKADAKGGAAQTSDTKAKEVPASDSKAKEMQSS------HTKADAKAGEMPNADTKEGHIAASISDPKFGDKVKSTSKSSSKVDPKFAEVSTHMVSGDLNQNISNNHP----PKKAGLGDAQQNSTIGGPSASLSENGGEKQGKISSTSPSKQSERLPVTQTPTSSRPALEENIVLGVALEGSKRTLPIEEGMARPPTQAEVKELATSRNGNGSPAAEKDKKDSQ 661    
Match NameStatsDescription
A0A5B7C933E-Value: 0.000e+0, PID: 66.58(Uncharacterized protein {ECO:0000313|EMBL:MPA7767... [more]
A0A2R6RJ22E-Value: 0.000e+0, PID: 65.63(Mechanosensitive ion channel protein {ECO:0000313... [more]
A0A5B7CE39E-Value: 0.000e+0, PID: 63.83(Uncharacterized protein {ECO:0000313|EMBL:MPA7767... [more]
A0A2R6RE24E-Value: 0.000e+0, PID: 62.64(Mechanosensitive ion channel protein {ECO:0000313... [more]
A0A6J0ZFB5E-Value: 0.000e+0, PID: 60.56(mechanosensitive ion channel protein 2, chloropla... [more]
A0A6P6TK15E-Value: 0.000e+0, PID: 61.11(mechanosensitive ion channel protein 2, chloropla... [more]
A0A5N6QUN6E-Value: 0.000e+0, PID: 60.93(Uncharacterized protein {ECO:0000313|EMBL:KAE8010... [more]
A0A061DHM1E-Value: 0.000e+0, PID: 60.13(MSCS-like 2 {ECO:0000313|EMBL:EOX91945.1})[more]
A0A6I9UNM4E-Value: 0.000e+0, PID: 61.04(mechanosensitive ion channel protein 2, chloropla... [more]
A0A5J5BUJ3E-Value: 0.000e+0, PID: 68.48(Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more]
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
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