XM_017389410.1

Resource Type: 
Polypeptide
Name: 
XM_017389410.1
Identifier: 
XM_017389410.1-protein
Sequence: 
MAAAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIA
QGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPA
IGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRS
DYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKY
QMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLH
LGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA
Sequence Length: 
290
Sequence Checksum: 
8b5f29c9d375d4700db9ba0512e24f0a
View location in JBrowse: 
DCARv2_Chr1:42288143..42293491+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017389410.1, derives from mRNA, XM_017389410.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GXZ4 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 248/288 (86.11%), Postives = 275/288 (95.49%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPDLLF +RNNFYLGAYQAAIN+S++PNLSP++A+ERD ++YRSYIA GSY+LVI+EIDSSAATPLQAVKLLALYL++P NKE+TISS+HEWL+DPAIGNNPILR IAGII++HEQDYNEALKHTN GGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLA+AW+NLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVC MHMGNFDEAESLLLEALNKD KDPETLAN++VC LHLGKPSSR+L+QLKLS  DHMLVKR S+ EE+FDRAVQT+A
Sbjct:    2 AAPDLLFGLRNNFYLGAYQAAINNSDVPNLSPEDAIERDCLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLTSPSNKETTISSIHEWLADPAIGNNPILRLIAGIIFLHEQDYNEALKHTNVGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCCMHMGNFDEAESLLLEALNKDAKDPETLANLIVCSLHLGKPSSRFLNQLKLSHPDHMLVKRASSAEESFDRAVQTIA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PYY4 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 252/288 (87.50%), Postives = 274/288 (95.14%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPDLLF +RNNFYLGAYQAAIN+S++PNLS ++A+ERDS++YRSYIA GSY+LVI+EIDSSAATPLQAVKLLALYLS+P NKE+TISSLHEWL+DPAIGNNPILR IAGII+MHEQDYNEALKHTN GGTM+LHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVC MHMGNFDEAESLLLEALNKD KDPETLAN+VVC LHLGK SSRYL+QLKLS  DHMLVKR S+ EE+FDRAVQT+A
Sbjct:    2 AAPDLLFGLRNNFYLGAYQAAINNSDVPNLSQEDAMERDSLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLSSPDNKETTISSLHEWLADPAIGNNPILRLIAGIIFMHEQDYNEALKHTNVGGTMDLHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCCMHMGNFDEAESLLLEALNKDAKDPETLANLVVCSLHLGKSSSRYLNQLKLSHPDHMLVKRSSSAEESFDRAVQTIA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4BNG5 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 248/289 (85.81%), Postives = 276/289 (95.50%), Query Frame = 0
 
Query:    2 AAAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            A APD LF++RNNFYLGAYQAAIN+S++PNLSPD+A+ERDS++YRSYIA GSY+LVI+EIDSSAATPLQAVKLLALYLS+P NKESTISSL EWL+DPAIGNNPILR IAGII+MHEQDYNEALKHTNAGGT+ELHALNVQIFLKMHRSDYAE+QLR+MQQIDEDHTLTQLANAW+NLAVGG+KIQEAYLIFQDFSEKYQMTSLILNG+AVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVCCLHLGKP SR+LSQLKLS  DH+L+KR +A EE+FDRAVQ+VA
Sbjct:    4 ATAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLSSPDNKESTISSLKEWLADPAIGNNPILRLIAGIIFMHEQDYNEALKHTNAGGTLELHALNVQIFLKMHRSDYAERQLRVMQQIDEDHTLTQLANAWLNLAVGGAKIQEAYLIFQDFSEKYQMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCCLHLGKPPSRFLSQLKLSHPDHILIKRATAAEESFDRAVQSVA 292
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QCS8 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 248/290 (85.52%), Postives = 272/290 (93.79%), Query Frame = 0
 
Query:    1 MAAAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            MAA PD LFS+RNNFYLGA+QAAIN+S +PNLSPD+ +ERD ++YRSYIA GS++LVISEIDSSAATPLQAVKLLALYLS+P NKESTISSL EWL DPAIGNNPILR IAGI++MHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAE+QLR+MQQ DEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVCCLH+GK SSR+LSQLKLS  DH+LVKR SA +E+FDRAVQ+VA
Sbjct:    1 MAAGPDQLFSLRNNFYLGAFQAAINNSEVPNLSPDDVIERDCLVYRSYIALGSFQLVISEIDSSAATPLQAVKLLALYLSSPDNKESTISSLKEWLGDPAIGNNPILRLIAGIVFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQADEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCCLHVGKSSSRFLSQLKLSHPDHVLVKRASAADESFDRAVQSVA 290
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7UFG1 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 530.791 bits (1366), Expect = 0.000e+0
Identity = 250/288 (86.81%), Postives = 272/288 (94.44%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPD LF++RNNFYLGAYQAAIN+S++PNLSPD+A+ERDSI++RSYIA GSY+L ISEIDSSA TPLQAVKLLALYLS+PGNKESTI+SL EWLSDPAIGNNP LR IAGII+MHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAE+QLR+MQQIDEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKY MTSLILNG+AVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVC LHLGKP+SR+LSQLKLS  DHMLVKRIS  EE FDRAVQ+VA
Sbjct:    2 AAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTPLQAVKLLALYLSDPGNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCNLHLGKPTSRFLSQLKLSHPDHMLVKRISTAEENFDRAVQSVA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QAM0 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 530.406 bits (1365), Expect = 0.000e+0
Identity = 252/288 (87.50%), Postives = 272/288 (94.44%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPDLLF +RNNFYLGAYQAAIN+SNIPNLS ++AVERDS++YRSYIA GSY+LVI+EIDSSAATPLQAVKLLALYL +P NKE+ ISSLHEWL+DPAIGNNPILR I+GII+MHEQDYNEALKHTN GGTM+LHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVC MHMGNFDEAESLLLEALNKD KDPETLAN+VVC LHLGK SSRYL+QLKLS  DHML+KR SA EE+FDRAVQT+A
Sbjct:    2 AAPDLLFGLRNNFYLGAYQAAINNSNIPNLSQEDAVERDSLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLLSPDNKETMISSLHEWLADPAIGNNPILRLISGIIFMHEQDYNEALKHTNVGGTMDLHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCCMHMGNFDEAESLLLEALNKDAKDPETLANLVVCSLHLGKSSSRYLNQLKLSHPDHMLIKRSSAAEESFDRAVQTIA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1ELM6 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0
Identity = 248/287 (86.41%), Postives = 272/287 (94.77%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTV 289
            AAPD LF++RN+FYLGAYQAAIN+SN+PNLSPD+A+ERDSI+YRSYIA GSY+LV+SEIDSSA TPLQAVKLLALYLS+P +KESTI+SLHEWLSDPAIGNNP LR IAGII+MHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAE+QLR+MQQ DEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKY MTSLILNG+AVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVC LHLGKP+SR+LSQLKLS  DH+LVKRISA EE FDRAVQ+V
Sbjct:    2 AAPDHLFNLRNHFYLGAYQAAINNSNLPNLSPDDAIERDSIVYRSYIALGSYQLVVSEIDSSAPTPLQAVKLLALYLSDPSSKESTIASLHEWLSDPAIGNNPTLRLIAGIIFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQTDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYSMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHLGKPTSRFLSQLKLSHPDHLLVKRISAAEENFDRAVQSV 288
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3AYY0 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 249/288 (86.46%), Postives = 271/288 (94.10%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPD LF++RNNFYLGAYQAAIN+S++PNLSPD+A+ERDSI++RSYIA GSY+L ISEIDSSA TPLQAVKLLALYLS+P NKESTI+SL EWLSDPAIGNNP LR IAGII+MHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAE+QLR+MQQIDEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKY MTSLILNG+AVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVC LHLGKP+SR+LSQLKLS  DHMLVKRIS  EE FDRAVQ+VA
Sbjct:    2 AAPDHLFNLRNNFYLGAYQAAINNSDLPNLSPDDAIERDSIVFRSYIALGSYQLAISEIDSSAPTPLQAVKLLALYLSDPSNKESTIASLQEWLSDPAIGNNPTLRLIAGIIFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCNLHLGKPTSRFLSQLKLSHPDHMLVKRISTAEENFDRAVQSVA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B1C4 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 527.709 bits (1358), Expect = 0.000e+0
Identity = 248/288 (86.11%), Postives = 271/288 (94.10%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTVA 290
            AAPDLLF +RNNFYLGAYQAAIN+S++PNLS D+++ERD ++YRSYIA GSY+LVI+EIDSSAATPLQAVKLLALYLS+P NKE+TISSLHEWL DPAIG+NPILR IAGI++MHEQDYNEALKHTNAGGT++LHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAW+NLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVC MHMGNFDEAE+ LLEALNKD KD ETLAN+VVC LHLGKPSSRYLSQLKLS  DHMLVKR SA EE+FDRAVQ +A
Sbjct:    2 AAPDLLFGLRNNFYLGAYQAAINNSDVPNLSQDDSIERDCLVYRSYIALGSYQLVINEIDSSAATPLQAVKLLALYLSSPDNKETTISSLHEWLGDPAIGSNPILRLIAGIVFMHEQDYNEALKHTNAGGTIDLHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCCMHMGNFDEAETFLLEALNKDAKDAETLANLVVCSLHLGKPSSRYLSQLKLSNPDHMLVKRTSAAEESFDRAVQMIA 289
[Close]
BLAST of XM_017389410.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1KS67 (Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR016478})

HSP 1 Score: 527.709 bits (1358), Expect = 0.000e+0
Identity = 247/287 (86.06%), Postives = 271/287 (94.43%), Query Frame = 0
 
Query:    3 AAPDLLFSVRNNFYLGAYQAAINSSNIPNLSPDEAVERDSIIYRSYIAQGSYELVISEIDSSAATPLQAVKLLALYLSNPGNKESTISSLHEWLSDPAIGNNPILRTIAGIIYMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLANAWINLAVGGSKIQEAYLIFQDFSEKYQMTSLILNGKAVCSMHMGNFDEAESLLLEALNKDTKDPETLANMVVCCLHLGKPSSRYLSQLKLSQADHMLVKRISAGEEAFDRAVQTV 289
            AAPD LF++RN+FYLGAYQAAIN+SN+PNLSPD+A+ERDSI+YRSYIA GSY+LV+SEIDSSA TPLQAVKLLALYLS+P +KESTI+SLHEWLSDPAIGNNP LR IAGII+MHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAE+QLR+MQQ DEDHTL QLANAW+NLAVGGSKIQEAYLIFQDFSEKY MTSLILNG+AVC MHMGNFDEAE+LLLEALNKD KDPETLAN+VVC LHLGKP+SR+LSQLKLS  DH+LVKRISA EE FDRAVQ+V
Sbjct:    2 AAPDHLFNLRNHFYLGAYQAAINNSNLPNLSPDDAIERDSIVYRSYIALGSYQLVVSEIDSSAPTPLQAVKLLALYLSDPSSKESTIASLHEWLSDPAIGNNPTLRLIAGIIFMHEQDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRVMQQTDEDHTLAQLANAWLNLAVGGSKIQEAYLIFQDFSEKYSMTSLILNGRAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHLGKPTSRFLSQLKLSHPDHLLVKRISAAEENFDRAVQSV 288
Match NameStatsDescription
A0A7J7GXZ4E-Value: 0.000e+0, PID: 86.11Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A2R6PYY4E-Value: 0.000e+0, PID: 87.50Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A6P4BNG5E-Value: 0.000e+0, PID: 85.81Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A5N6QCS8E-Value: 0.000e+0, PID: 85.52Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A5A7UFG1E-Value: 0.000e+0, PID: 86.81Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A2R6QAM0E-Value: 0.000e+0, PID: 87.50Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A6J1ELM6E-Value: 0.000e+0, PID: 86.41Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A1S3AYY0E-Value: 0.000e+0, PID: 86.46Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A5J5B1C4E-Value: 0.000e+0, PID: 86.11Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
A0A6J1KS67E-Value: 0.000e+0, PID: 86.06Coatomer subunit epsilon {ECO:0000256|PIRNR:PIRNR0... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.