Resource Type:
Polypeptide
Name:
XM_017375173.1
Identifier:
XM_017375173.1-protein
Sequence:
MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESE
DARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRA
AVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLG
FQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSD
IGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKG
MNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRF
LHEVAFKLWKAPKYGA
Sequence Length:
316
Sequence Checksum:
0bee72e5bc2845899f020a21c2786114
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375173.1, derives from mRNA, XM_017375173.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BLK8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA69585.1}))
HSP 1 Score: 409.453 bits (1051), Expect = 7.684e-142
Identity = 198/316 (62.66%), Postives = 246/316 (77.85%), Query Frame = 0
Match: A0A5B7BLK8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA69585.1}))
HSP 1 Score: 409.453 bits (1051), Expect = 7.684e-142
Identity = 198/316 (62.66%), Postives = 246/316 (77.85%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR LV+YGDGLA+ V+P+HTHLH LAS CGFLSLP+SPPSE+ED R++REFAQLLD + + SGE T K EK S +++I++RFMGMRAA+IT +SSLKS G K G +VLQL EL D++ A+P V+A +LLKLLG QEGK E +QFDL+F+HIGA E GQKDIE++N ++G ++ IA GS+IGS LHLSLV+ YG VS++++ +LSVL T +NSDL LLFPRQSY +KG NLR +VR HCP+L+ QWQS VTRKD F F++FKEH GNLT+PADRF+HEVAFKLWKAPKYGA
Sbjct: 1 MADKPSRSLVMYGDGLAQFVNPSHTHLHSLASRGSCGFLSLPNSPPSENEDGRIVREFAQLLDACEAYHNMSGEDTAKVEYQEK-SVMQTIAERFMGMRAAIITSNSSLKSLGDKLGFTVLQLNELQDKSHPLAEPLLDVVASQLLKLLGLQEGKTSETNQFDLVFVHIGAGENTNGQKDIEYVNGMVGELLHIAQPGSEIGSHLHLSLVMSYGAVSEDNNPSLSVLITRDENNSDLSLLFPRQSYIMKGGNLRKNVRHHCPMLIAQWQSAVTRKDMAETFSFKDFKEHGGNLTIPADRFIHEVAFKLWKAPKYGA 315
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q2Y4 ((BTB/POZ domain and ankyrin repeat-containing protein {ECO:0000313|EMBL:PSS01222.1}))
HSP 1 Score: 394.045 bits (1011), Expect = 6.906e-136
Identity = 191/316 (60.44%), Postives = 242/316 (76.58%), Query Frame = 0
Match: A0A2R6Q2Y4 ((BTB/POZ domain and ankyrin repeat-containing protein {ECO:0000313|EMBL:PSS01222.1}))
HSP 1 Score: 394.045 bits (1011), Expect = 6.906e-136
Identity = 191/316 (60.44%), Postives = 242/316 (76.58%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADKASRGLV+YGDGLAR +D +H +LH LAS CCGFLSLP+SPPSESED+R++REFAQLLD + +G T DV +K + +IS+RFMGMR+A+IT++S LK+FGGK G ++LQL +L D A A+ + VLA ELLKLLGFQ+GK E + FDL+F+H+G E+ GQKD E++N+L+GG+M IA S+IGSRLH+SLV+ YG VS++DD +LSVL + SDL L+FPRQSY +KG NLR DVR H P+L+ QWQ+GVTRKD F F +FKEH LT+PADRF+HE+AFKLWKAPKYGA
Sbjct: 1 MADKASRGLVVYGDGLARFIDKSHANLHSLASRGCCGFLSLPYSPPSESEDSRIVREFAQLLDACEAS--PNGGDNTADVEYQKCL-MPTISERFMGMRSAIITNNSRLKAFGGKLGFTMLQLSDLLDNGHAVAESARDVLAPELLKLLGFQDGKTSETNPFDLVFIHVGDGEKN-GQKDTEYVNNLVGGLMHIADPRSEIGSRLHMSLVMSYGSVSEDDDPSLSVLTSKDEDKSDLSLIFPRQSYTMKGQNLRNDVRHHSPMLIAQWQNGVTRKDAAEAFSFNDFKEHGAGLTIPADRFVHEIAFKLWKAPKYGA 312
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7STS2 ((Uncharacterized protein {ECO:0000313|EMBL:CBI20671.3}))
HSP 1 Score: 392.889 bits (1008), Expect = 2.815e-135
Identity = 191/321 (59.50%), Postives = 240/321 (74.77%), Query Frame = 0
Match: D7STS2 ((Uncharacterized protein {ECO:0000313|EMBL:CBI20671.3}))
HSP 1 Score: 392.889 bits (1008), Expect = 2.815e-135
Identity = 191/321 (59.50%), Postives = 240/321 (74.77%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQ-----KDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SRGLV+YGDGLAR ++P+HTHLH LAS CGFLSL +SPPSE+ED R++REFAQLLD + + + G T ++ ++ S + +IS+RFMGMRAA++ ++SSL SFGG G +V+Q EL N ++P V+A E LKLLGFQEGK LE SQFDLIF+HIGA E+ GQ D+E++N L+G +M+ A GS+IGSRLHLSLV+ YG VS++DD +LSVL T +NSDL L PRQSY +KG N R ++R HCP+L+ QWQ VTRKD F F++FKEH GNLT+PADRFLHEVAFKLWKAPKYGA
Sbjct: 1 MADKPSRGLVLYGDGLARFINPSHTHLHDLASRGICGFLSLSNSPPSETEDERIVREFAQLLDSCEASLGVNVGGAT-NLECQQKSLMPTISERFMGMRAAIVANNSSLTSFGGTLGFTVMQTDELIKNNHPLSEPPVDVVASESLKLLGFQEGKTLETSQFDLIFMHIGAGEKANGQTEIIANDVEYINGLVGRIMQTAEPGSEIGSRLHLSLVMSYGAVSKDDDPSLSVLVTKNENNSDLSSLSPRQSYTMKGGNPRDNIRHHCPMLIAQWQYAVTRKDMAKTFSFEDFKEHGGNLTIPADRFLHEVAFKLWKAPKYGA 320
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GCM3 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ08540.1}))
HSP 1 Score: 385.571 bits (989), Expect = 1.278e-132
Identity = 189/316 (59.81%), Postives = 240/316 (75.95%), Query Frame = 0
Match: A0A7J0GCM3 ((Uncharacterized protein {ECO:0000313|EMBL:GFZ08540.1}))
HSP 1 Score: 385.571 bits (989), Expect = 1.278e-132
Identity = 189/316 (59.81%), Postives = 240/316 (75.95%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADKASRGLV+YGDGLAR +D +HT+LH LAS CCGFLSLP+SPPSESED+R++REFAQLLD T DV +K + +IS+RFMGMR+A+IT++S LK+FGGK G ++LQL +L D A A+ + VLA ELLKLLGFQ+G+ E S FDL+F+H+G E+ GQKD E++N+L+GG+M IA S+IGSRLH+SLV+ YG VS++D +LSVL + SDL ++FPRQSY +KG NLR DVR H P+L+ QWQ+GVTRKD F F++FKEH LT+PADRF+HE+AFKLWKAPKYGA
Sbjct: 1 MADKASRGLVVYGDGLARFIDKSHTNLHSLASRGCCGFLSLPYSPPSESEDSRIVREFAQLLDAWWGY-------NTADVECQKCL-MPTISERFMGMRSALITNNSRLKAFGGKLGFTMLQLSDLLDNGHAVAESARDVLAPELLKLLGFQDGRTSETSPFDLVFIHVGDGEKN-GQKDTEYVNNLVGGLMRIADPRSEIGSRLHMSLVMSYGSVSEDDVPSLSVLTSKDEDKSDLSVIFPRQSYTMKGQNLRNDVRHHSPMLIAQWQNGVTRKDAAEGFSFKDFKEHGAGLTIPADRFVHEIAFKLWKAPKYGA 307
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9EW18 ((Uncharacterized protein {ECO:0000313|EMBL:SPC82976.1}))
HSP 1 Score: 373.629 bits (958), Expect = 9.590e-128
Identity = 179/323 (55.42%), Postives = 242/323 (74.92%), Query Frame = 0
Match: A0A2N9EW18 ((Uncharacterized protein {ECO:0000313|EMBL:SPC82976.1}))
HSP 1 Score: 373.629 bits (958), Expect = 9.590e-128
Identity = 179/323 (55.42%), Postives = 242/323 (74.92%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQ-PSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQK------DIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR L++YGDG+AR ++P+ THL+ LAS + CGFL+LP++P SESED RV+REFA LLD ++ +D SG T + +IS+RFMGM+A++IT+++SLKSFG K G SVLQ +L + + + P++VV+A ELL+LLGF+EGK L+ S +DL+F+HIG E++ G++ D+E++N+L+GG+++IA GS+I SRLHLSL++ +GDV ++D NLSVL T SDL +LFPRQSY ++G N R DVR HCPIL+ QWQ VTRKD V F F++FKEH GNL +PADRFLHEVAFK+WKAPKYGA
Sbjct: 1 MADKPSRALILYGDGMARFIEPSQTHLNSLASRASCGFLTLPNAPSSESEDERVVREFAVLLDAYESYIDKSGNTT----------RMPTISERFMGMKASLITNNTSLKSFGAKLGFSVLQFDDLIENKHSLVELPANVVVA-ELLRLLGFKEGKTLDTSDYDLVFVHIGDGEKVIGERNKANANDMEYVNALVGGILQIAQPGSEISSRLHLSLLMSFGDVFVDNDPNLSVLITKDEKTSDLSILFPRQSYTMRGENPRKDVRHHCPILIAQWQYAVTRKDMVEAFSFRDFKEHGGNLVIPADRFLHEVAFKVWKAPKYGA 312
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5GYB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2619553.1}))
HSP 1 Score: 372.089 bits (954), Expect = 2.679e-127
Identity = 187/316 (59.18%), Postives = 229/316 (72.47%), Query Frame = 0
Match: A0A5N5GYB2 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2619553.1}))
HSP 1 Score: 372.089 bits (954), Expect = 2.679e-127
Identity = 187/316 (59.18%), Postives = 229/316 (72.47%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR LV+YGDG AR VDP+HTHLH LAS + CGFLSLP SPPSESED R++REFA LLD + + TS G T++ +K S+ IS+RFMGM+AA+ T++SSLKSFG K G SV Q+ + A A+ A ELLKLLGFQEGKV+E+SQ+DL+F+H+GA E +E+LN+L+G + +I GS++ SRLHLS+VL YG VS+ND TNLSV NSDL L PRQSY +KG N R DVR HCP+L+ QWQ VTRKD F F++FKE+ GNL +PADRFLHEVAFKLWKAPKYGA
Sbjct: 1 MADKPSRALVLYGDGSARFVDPSHTHLHSLASKASCGFLSLPISPPSESEDERIVREFAVLLDAYEAYLYTSS-GITEEEREKK--SLIPISERFMGMKAAIFTNNSSLKSFGTKLGFSVFQIDGFLKNSPAGAEQPVNFGASELLKLLGFQEGKVVESSQYDLVFVHVGAAE-------VEYLNALVGAISQIDQPGSEVSSRLHLSVVLNYGKVSENDVTNLSVSIRKDDENSDLAKLIPRQSYTMKGENPRKDVRDHCPMLIAQWQYAVTRKDMAETFSFKDFKENGGNLVIPADRFLHEVAFKLWKAPKYGA 306
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZVW7 ((uncharacterized protein LOC107420100 {ECO:0000313|RefSeq:XP_015884452.1}))
HSP 1 Score: 372.474 bits (955), Expect = 3.102e-127
Identity = 186/323 (57.59%), Postives = 236/323 (73.07%), Query Frame = 0
Match: A0A6P3ZVW7 ((uncharacterized protein LOC107420100 {ECO:0000313|RefSeq:XP_015884452.1}))
HSP 1 Score: 372.474 bits (955), Expect = 3.102e-127
Identity = 186/323 (57.59%), Postives = 236/323 (73.07%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQK------DIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDD-TNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR LV+YGDGLAR +DP+HTHLH LAS + CGFLSLP+SP SE ED R++REFA LLDV + +++ +TKD K S + +IS+RFMGM+AA+IT++S+LKSFG K G SVLQ EL N+ A+P +A ELLKLLGF EGK L+ SQFDL+F+H+GA E++ +K D+E+ NSL+GGV+ A GS+I SRLHLS+V+ YG V ++D+ +NLSVL +S L LFPRQSY +KG N R DVR H P+L+ QWQ VTRKD F F++F +H GNL +PADRFLHE+AFKLWKAPKYGA
Sbjct: 1 MADKPSRALVLYGDGLARFIDPSHTHLHSLASKASCGFLSLPNSPASEREDERLVREFAILLDVCEAYLNSDA-NSTKDEFQNK-SMIPTISERFMGMKAAIITNNSTLKSFGVKFGFSVLQYNELNRINQPRAEPLETFVASELLKLLGFHEGKALDMSQFDLVFVHVGAGEKVNDEKGETISNDMEYFNSLVGGVLHEAQPGSEISSRLHLSVVMSYGSVLEDDNNSNLSVLINKNGKSSKLAPLFPRQSYTMKGENQRKDVRHHFPMLIAQWQHAVTRKDMAEAFSFEDFMQHGGNLVIPADRFLHEIAFKLWKAPKYGA 321
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KP92 ((Uncharacterized protein {ECO:0000313|EMBL:KDP34105.1}))
HSP 1 Score: 371.703 bits (953), Expect = 3.712e-127
Identity = 177/316 (56.01%), Postives = 229/316 (72.47%), Query Frame = 0
Match: A0A067KP92 ((Uncharacterized protein {ECO:0000313|EMBL:KDP34105.1}))
HSP 1 Score: 371.703 bits (953), Expect = 3.712e-127
Identity = 177/316 (56.01%), Postives = 229/316 (72.47%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR LV+YGDGLA +D +HTH+H LAS + CGFLSLP++PP ESED R++REFA LLD + D S E +T S+ +IS RFMGM+AA++TD+ SLKSFG K G ++L +L+ + +++ S ++ ELLKLLGFQEGK ++ SQFDL+ +HIG E + D E++N+L+GGVM A GS+IGSRLHLSLV+ YG++ + D TNLSVL + + NSDL +LFPRQSY ++G R DVR HCP+L+ QWQ VTR D F F++FKEH GNL +PADRF+HEVAFKLWKAPKYGA
Sbjct: 1 MADKPSRSLVLYGDGLAHFIDQSHTHIHSLASKAACGFLSLPNAPPLESEDERIVREFAYLLDACEAYQDKSVEKST---------SMPTISQRFMGMKAAIVTDNPSLKSFGSKVGFTILSFSDLHGNDGSFSGSSIDLVISELLKLLGFQEGKTIDTSQFDLVLVHIGDGETV--SSDTEYINTLVGGVMRAAEPGSEIGSRLHLSLVMSYGNIREMDSTNLSVLVSKEERNSDLSMLFPRQSYTMRGEKPRNDVRHHCPMLVAQWQYAVTRMDMAETFSFKDFKEHGGNLVIPADRFMHEVAFKLWKAPKYGA 305
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498HQD1 ((Uncharacterized protein {ECO:0000313|EMBL:RXH72950.1}))
HSP 1 Score: 370.933 bits (951), Expect = 7.243e-127
Identity = 185/316 (58.54%), Postives = 228/316 (72.15%), Query Frame = 0
Match: A0A498HQD1 ((Uncharacterized protein {ECO:0000313|EMBL:RXH72950.1}))
HSP 1 Score: 370.933 bits (951), Expect = 7.243e-127
Identity = 185/316 (58.54%), Postives = 228/316 (72.15%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQKDIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SR LV+YGDG AR VDP+HTHLH LAS + CGFLSLP +PPSESED RV+REFA LLD + +DTS G TK+ +K S+ IS+RFMGM+AA+ T++SSLKSFG K G S+ Q+ + A A+ A +LLKLLGFQEGK +E+SQ+DL+F+H+ A E +E+LN+L+G + +I GS++ SRLHLS+VL YG VS+ND TNLSV NSDL L PRQSY +KG N R DVR HCP+L+ QWQ VTRKD F F++FKE+ GNL +PADRFLHEVAFKLWKAPKYGA
Sbjct: 1 MADKPSRALVLYGDGSARFVDPSHTHLHSLASKASCGFLSLPITPPSESEDERVVREFAVLLDAYEAYLDTSS-GITKEEREKK--SLIPISERFMGMKAAIFTNNSSLKSFGTKLGFSIFQIDGFLKNSPAGAEQPINFGASKLLKLLGFQEGKAVESSQYDLVFVHVAAAE-------VEYLNALVGAISQIDQPGSEVSSRLHLSVVLNYGKVSENDVTNLSVSIRKDDENSDLAKLIPRQSYTMKGENPRKDVRDHCPMLIAQWQYAVTRKDMAETFSFKDFKENGGNLVIPADRFLHEVAFKLWKAPKYGA 306
BLAST of XM_017375173.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5XNC9 ((uncharacterized protein LOC111284878 isoform X1 {ECO:0000313|RefSeq:XP_022729680.1}))
HSP 1 Score: 368.622 bits (945), Expect = 8.248e-126
Identity = 180/322 (55.90%), Postives = 238/322 (73.91%), Query Frame = 0
Match: A0A6P5XNC9 ((uncharacterized protein LOC111284878 isoform X1 {ECO:0000313|RefSeq:XP_022729680.1}))
HSP 1 Score: 368.622 bits (945), Expect = 8.248e-126
Identity = 180/322 (55.90%), Postives = 238/322 (73.91%), Query Frame = 0
Query: 1 MADKASRGLVIYGDGLARLVDPTHTHLHKLASLSCCGFLSLPHSPPSESEDARVIREFAQLLDVGDTCMDTSGEGTTKDVTSEKLSSVKSISDRFMGMRAAVITDSSSLKSFGGKNGLSVLQLQELYDRNKAYAQPSHVVLAFELLKLLGFQEGKVLEASQFDLIFLHIGAHEEIFGQK------DIEFLNSLIGGVMEIASVGSDIGSRLHLSLVLGYGDVSQNDDTNLSVLATNQSSNSDLILLFPRQSYCLKGMNLRTDVRPHCPILMTQWQSGVTRKDNVNNFFFQEFKEHCGNLTVPADRFLHEVAFKLWKAPKYGA 316
MADK SRGLV+YGDGLAR ++P+HTH H LAS + CGFLSLP++PPSESED R++REFA L+D + + +G+ S++ S + ++S+RFMGMRAA+ T++S+LKSFG K G SVL L LY + + S LA ELL LLGFQEGK++E+ QFDL+ LHIG+ E + ++ D+EF+N+L+G +M +A G++IGSRLHLSLV+GYG VS+ DD +LS+L+ N N L LFPRQSY ++G + R DVR H P+L+ Q+Q VTRKD V +F F++FKEH GNLT+PADR LHE+AFKLWKAPKYGA
Sbjct: 1 MADKPSRGLVLYGDGLARFIEPSHTHPHSLASKANCGFLSLPNAPPSESEDVRIVREFALLVDACEAYFNKNGQ------KSQESSVIPTMSERFMGMRAALFTNNSNLKSFGEKIGFSVLDLNRLYGNSNSPPALSVDKLASELLTLLGFQEGKIMESGQFDLVILHIGSGENLNVEEGKATASDMEFMNALLGAIMLVAQPGTEIGSRLHLSLVMGYGYVSKADDPDLSILSPNFEKNPHLSALFPRQSYNMRGESPRNDVRHHSPMLIAQYQYAVTRKDMVESFSFEDFKEHSGNLTIPADRLLHEIAFKLWKAPKYGA 316
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BLK8 | E-Value: 7.684e-142, PID: 62.66 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6958... [more] |
| A0A2R6Q2Y4 | E-Value: 6.906e-136, PID: 60.44 | (BTB/POZ domain and ankyrin repeat-containing prot... [more] |
| D7STS2 | E-Value: 2.815e-135, PID: 59.50 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2067... [more] |
| A0A7J0GCM3 | E-Value: 1.278e-132, PID: 59.81 | (Uncharacterized protein {ECO:0000313|EMBL:GFZ0854... [more] |
| A0A2N9EW18 | E-Value: 9.590e-128, PID: 55.42 | (Uncharacterized protein {ECO:0000313|EMBL:SPC8297... [more] |
| A0A5N5GYB2 | E-Value: 2.679e-127, PID: 59.18 | (Uncharacterized protein {ECO:0000313|EMBL:KAB2619... [more] |
| A0A6P3ZVW7 | E-Value: 3.102e-127, PID: 57.59 | (uncharacterized protein LOC107420100 {ECO:0000313... [more] |
| A0A067KP92 | E-Value: 3.712e-127, PID: 56.01 | (Uncharacterized protein {ECO:0000313|EMBL:KDP3410... [more] |
| A0A498HQD1 | E-Value: 7.243e-127, PID: 58.54 | (Uncharacterized protein {ECO:0000313|EMBL:RXH7295... [more] |
| A0A6P5XNC9 | E-Value: 8.248e-126, PID: 55.90 | (uncharacterized protein LOC111284878 isoform X1 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |