Resource Type:
Polypeptide
Name:
XM_017373869.1
Identifier:
XM_017373869.1-protein
Sequence:
MSKMKHLLRKLHIGGGGADNFADHHRVEASSSVSASPTPQTTPVAAETAA
YSALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQ
RSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGK
MPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGA
GQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIP
IGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDD
GSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVT
ASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGL
SSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDM
FSNTNPQYLGEDNMLAKCNIYDGNMADWGAQCDHTFLRNSEQCFVPFTGA
QLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSE
TTTNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVG
NDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVL
GEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGD
ALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLH
RPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVV
KVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVI
LWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNP
VAQLRPSFGQIIARLRCFQHLVIAEKRKAGKVSGRNERKNSVE
Sequence Length:
943
Sequence Checksum:
6f827b29047dbc001ec77dfe125d89d8
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017373869.1, derives from mRNA, XM_017373869.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A266 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1078.93 bits (2789), Expect = 0.000e+0
Identity = 568/965 (58.86%), Postives = 699/965 (72.44%), Query Frame = 0
Match: A0A5J5A266 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1078.93 bits (2789), Expect = 0.000e+0
Identity = 568/965 (58.86%), Postives = 699/965 (72.44%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSS------VSASPTPQTTPVAAETAAYS-------ALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDI-----------SDTVIGH--ERVVTASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQ-CDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANA-------------VGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEK-SSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVP-DWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MSKMKHL RKLHIGGG F DHHR+ ++ + V P QTT + + +++ + A SGE++ + +FEEE+Q+QLALAISVSDP+ RED ETAQIKAAKQ SLG S +E++VEFLS+RYWS++VVNYD+KVM+GFYD+ G +SN QGKMP L+DL+AI VSD+VDYEVILV+RA D ELR+LEE+V + ++ + L G MN L+Q IAD+VVDRMGGPV +A+E+ +RWT RS E+RNSL S+I+P+GCL+VGLSRHRALLFKVLAD+INLPCML+KGSYYTGTD+GAVNLIKID+GSEYIIDLMGAPG LIPAEVPS +LQN G D S + + T++ +RV SS + + GI D+ NV +KNQ ERFE+DFGKLLPSLC+S+EG S E+ SA + ++VKDVSKYVISAAKNP+FAQKLHAVLLE+GASP D+F + NPQ +GE +L + N+ D GAQ L N+EQ + N ++++Q + AQ+ L V N S+P+ + TT F A A V S +VA L + SS+ N +P+++L+ + K+ V NIEK +E+ + + G N+ C+ +NE+ + P+LGE AEWE+ WEDLQ+ ERIGIGSYGEV+ A+WN TEVAVK+FM+QDISGDAL QFKCEVEIMLRLRHPNVVLFMGAVT PPNLSILTEFLPRGSL+KLLHRPNIQ+DEKRR+RMALDVAKGMNYLHTS+P+IVHRDLKT NLLVDKNWVVKVCDFG+SR+ H TFLSS STAGTPEWMAPEVLRNE SNEK DVYSFGVILWELATLR+PW MNSMQVVGAVGFQHRHLD+P D VDP+V ++I +CW+P QLRPSFGQ+I RL+ QHLV+
Sbjct: 1 MSKMKHLFRKLHIGGG----FHDHHRMASADTETEIRPVVNHPPSQTTSLPSSSSSSAAALARTRAGNSGENSV-DLNFFEEEFQVQLALAISVSDPDAREDPETAQIKAAKQISLGCSPAETLVEFLSLRYWSHDVVNYDDKVMDGFYDVCGIASNSVGQGKMPVLMDLQAISVSDNVDYEVILVNRAVDPELRQLEERVYMIYMECRVLEQGTNMNDLIQRIADLVVDRMGGPVGDAEEISERWTIRSCELRNSLNSIILPLGCLDVGLSRHRALLFKVLADKINLPCMLVKGSYYTGTDEGAVNLIKIDNGSEYIIDLMGAPGMLIPAEVPSGHLQNSGSDMSSAAETMIDSCPVIEKGTGTLVSPVLDRVANVGSSKEASLV--GIQLIGDEGNVIEKNQTERFEHDFGKLLPSLCRSHEGSSVASERASAVQNMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFLDINPQDMGEQKVLEQVNLLHREKVDDGAQNYLEMLLSNNEQSLIRSIEVHSCNNAHWESKQKHSPQESAAQQ--------LELESIVINSGHSLPSDT-TTGGFVLVSAGANEMTQTDEMGEHLVDISSMVAGALLGQQSHESSVPSVANYYEAKPKNSLLADGEYYLKDKVGKVLNNIEKDKESA---VIANTGLPNV-CSAHNERINKPILGEAAEWEVQWEDLQIGERIGIGSYGEVYHADWNGTEVAVKKFMDQDISGDALVQFKCEVEIMLRLRHPNVVLFMGAVTHPPNLSILTEFLPRGSLYKLLHRPNIQIDEKRRMRMALDVAKGMNYLHTSHPVIVHRDLKTPNLLVDKNWVVKVCDFGLSRMKHDTFLSSKSTAGTPEWMAPEVLRNEPSNEKSDVYSFGVILWELATLRIPWTGMNSMQVVGAVGFQHRHLDIPEDIVDPMVAQIITDCWHPQPQLRPSFGQLIFRLKRLQHLVV 945
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ALK6 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55953.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55953.1}))
HSP 1 Score: 1074.31 bits (2777), Expect = 0.000e+0
Identity = 567/962 (58.94%), Postives = 695/962 (72.25%), Query Frame = 0
Match: A0A5B7ALK6 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55953.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55953.1}))
HSP 1 Score: 1074.31 bits (2777), Expect = 0.000e+0
Identity = 567/962 (58.94%), Postives = 695/962 (72.25%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSS--VSASPTPQTTPVAAETAAYSALTSG-----------ESA--AAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVTASSSN-----------SVTALSE-----GIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQ-CDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQE---ELNFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANA----VGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MSKMKHL RKLHIGGG F D HR+ ++ + + +P PQTT + + T+A S+ ++ ESA + +FEEE+Q+QLALAISVSDP+ RED ETAQIKAAKQ SLG + +E++VEFLS+RYWS+N+VNYD+KVM+GFYD+ +SN QGKMP L+DL+A+ SD+VDYEVILV+R D EL+KLEE+ + ++ + L G MNGL+Q IAD+VVDRMGGPV +A+E+LKR R+ E+RNSL ++I+P+GCL+VGLSRHRALLFKVLAD+INLPCMLIKGSYYTGTD+GAVNLIKI +GSE+I+DLMGAPGTLIPAEVPS +LQN G D RS +I++TV V+ ++ V +L E I K D+ NV +KNQ ERFE++FGKLLPSLC+S EG S K S A+ ++VKDVSKYVISAAKNP+FAQKLHAVLLE+GASP D+F + NPQ LGE +L K N+ +G D GAQ L N+EQ + Q N D ++ AQ+ E N+ LP A+ EG V + T D V S++ A L + + S + N G+P++ L D K+ V IEK +E+ ++L N C+ +NE+ P+LGEVAEWEI WEDLQ+ ERIGIGSYGEV+ A+WNSTEVAVK+FM+QDISGDAL QFKCEVEIMLRLRHPNVVLFMGAVT PPNLSILTEFLPRGSLFKLLHRPNIQLDEKRR+RMALDVAKGMNYLHTS+P+IVHRDLKT NLLVDKNWVVKVCDFG+SR+ H TFLSS STAGTPEWMAPEVLRNE SNEK DVYSFGVILWELATLR+PW+ +NSMQVVGAVGFQ RHLD+P+ VDP+V ++I +CW+ QLRPSFGQ+I+RL+ QHLV+
Sbjct: 1 MSKMKHLFRKLHIGGG----FHDQHRMASAETRPLVNTPPPQTTSLPSSTSASSSSSAAAAAALARTRAVESAENPVDFNFFEEEFQVQLALAISVSDPDAREDPETAQIKAAKQISLGCAPTETLVEFLSLRYWSHNIVNYDDKVMDGFYDVCCVTSNSVGQGKMPLLMDLQAMSASDNVDYEVILVNRVVDPELQKLEEREYMIYMECRVLEQGTNMNGLIQRIADLVVDRMGGPVGDAEEMLKRCAVRNRELRNSLNTIILPLGCLDVGLSRHRALLFKVLADKINLPCMLIKGSYYTGTDEGAVNLIKIGNGSEFILDLMGAPGTLIPAEVPSGHLQNSGSDMRSVANIAETVRDSCPVIEKATGTLVVSPVLDRVAKVGSLKEEASFVNILLKGDEGNVIEKNQTERFEHEFGKLLPSLCRSQEGSSVASGKASTAQNMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFLDMNPQDLGEQKVLEKVNLLNGGKVDDGAQNYLEMLLSNNEQSLISSIEVQSSNNAHCDRKRKHSPEKSAAQKLELESTVINSGHSLPSDTAS-EGFVLVSTGANEMIQTDDVGEDVVLVDLSRMAARALHGEQSHESFMPSVANYYKGKPKNTLAAVDGYYLKDKVGKVLNYIEKDKESAVRLTEMPNSGLPNVCSAHNERIKPILGEVAEWEILWEDLQIGERIGIGSYGEVYHADWNSTEVAVKKFMDQDISGDALAQFKCEVEIMLRLRHPNVVLFMGAVTHPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRMRMALDVAKGMNYLHTSHPVIVHRDLKTPNLLVDKNWVVKVCDFGLSRMKHDTFLSSNSTAGTPEWMAPEVLRNEPSNEKSDVYSFGVILWELATLRIPWSGLNSMQVVGAVGFQSRHLDIPEEVDPMVAQIITDCWHNEPQLRPSFGQLISRLKRLQHLVV 957
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGN7 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55952.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55952.1}))
HSP 1 Score: 1067.76 bits (2760), Expect = 0.000e+0
Identity = 563/966 (58.28%), Postives = 700/966 (72.46%), Query Frame = 0
Match: A0A5B7AGN7 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55952.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55952.1}))
HSP 1 Score: 1067.76 bits (2760), Expect = 0.000e+0
Identity = 563/966 (58.28%), Postives = 700/966 (72.46%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSS--VSASPTPQTTPVAAETAAYSALTSG-----------ESA--AAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVTASSSNSVTALS-EGIPS---------------KKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQC-DHTFLRNSEQCFVPFTGAQLFEN--VSYDTEQNVIKRPQTAQE-ELNFP--NTDFMLPL------FVANKEGSVPNYSETTTNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MSKMKHL RKLHIGGG F D HR+ ++ + + +P PQTT + + T+A S+ ++ ESA + +FEEE+Q+QLALAISVSDP+ RED ETAQIKAAKQ SLG + +E++VEFLS+RYWS+N+VNYD+KVM+GFYD+ +SN QGKMP L+DL+A+ SD+VDYEVILV+R D EL+KLEE+ + ++ + L G MNGL+Q IAD+VVDRMGG V +A+++L+RWT RS E+RNSL ++I+P+GCL+VGLSRHRALLFKVLADRI+LPCML+KGS YTGTD+GAVNLIKID+GSEYIIDLMGAPGTLIPAEVPS +LQN GLD RS D+++TV VV + + + + +GI K ++ N+ +KNQ ERFE+DFGKLLPSLC+S+E LS K SAA+K+QVKDVSKY+ISAAKNP FAQKLHAVLL++GASPS D+F + NPQ LGE ++ K + + D GAQ FL ++Q +P TG Q + + D++Q AQ+ EL P N+ LP FV G+ + T+ D V S++ A L + S + A N G+P++ L +D K+ V IEK +E+ ++L N C+ +NE+ P+L E AEWEIPWEDLQ+ ERIGIGSYG+V+ A+WN TEVAVK+FM+QDISGDAL QFKCEVEIMLRLRHPNVVLFMGAVT PNLSILTEFLPRGSLFKLLHR N QLDEKRR+RM LDVAKGMNYLHTS+P+IVHRDLKT NLLVDKNWVVKVCDFG+SR+ H TFLSS STAGTPEWMAPEVLRNE SNEK DVYSFGVILWELATLR+PW+ +NSMQVVGAVGFQ RHLD+P+ VDP+V ++I +CW+ QLRPSFGQ+I+RL+ QHLV+
Sbjct: 1 MSKMKHLFRKLHIGGG----FHDQHRMASAETRPLVNTPPPQTTSLPSSTSASSSSSAAAAAALARTRAVESAENPVDFNFFEEEFQVQLALAISVSDPDAREDPETAQIKAAKQISLGCAPTETLVEFLSLRYWSHNIVNYDDKVMDGFYDVCCVTSNSVGQGKMPLLMDLQAMSASDNVDYEVILVNRVVDPELQKLEEREYMIYMECRVLEQGTNMNGLIQRIADLVVDRMGGQVGDAEKMLERWTVRSCELRNSLNTIILPLGCLDVGLSRHRALLFKVLADRISLPCMLVKGSNYTGTDEGAVNLIKIDNGSEYIIDLMGAPGTLIPAEVPSGHLQNSGLDVRSVADVAETVKDSCLVVEKGTGTVIVSPNLDGIAKVGSSKEEASFVVIQLKGNEGNLLEKNQTERFEHDFGKLLPSLCRSHEDLSGASGKTSAAQKMQVKDVSKYIISAAKNPGFAQKLHAVLLDSGASPSPDLFLDMNPQDLGEQELVEKILLLNREKVDDGAQSYPEMFLSKNKQSLIPSTGVQSYNDNDAHCDSKQKHSLEESAAQQLELESPVMNSGHSLPSDSTSEGFVLVSTGA---NEMSQTDDVGEDVVPVDLSRMAARALHGVQSHESFMPSAANCYEGKPKNVLAADDGYYLKDKVGKVLNYIEKDKESAVRLTEMPNSGLPNVCSAHNERIKPMLAEAAEWEIPWEDLQIAERIGIGSYGDVYHADWNGTEVAVKKFMDQDISGDALVQFKCEVEIMLRLRHPNVVLFMGAVTHSPNLSILTEFLPRGSLFKLLHRTNTQLDEKRRMRMTLDVAKGMNYLHTSHPVIVHRDLKTPNLLVDKNWVVKVCDFGLSRMKHDTFLSSNSTAGTPEWMAPEVLRNEPSNEKSDVYSFGVILWELATLRIPWSGLNSMQVVGAVGFQSRHLDIPEEVDPMVAQIITDCWHNEPQLRPSFGQLISRLKRLQHLVV 959
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AI21 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55954.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55954.1}))
HSP 1 Score: 1065.45 bits (2754), Expect = 0.000e+0
Identity = 567/961 (59.00%), Postives = 695/961 (72.32%), Query Frame = 0
Match: A0A5B7AI21 ((Putative serine/threonine-protein kinase EDR1 {ECO:0000313|EMBL:MPA55954.1}) (2.7.11.25 {ECO:0000313|EMBL:MPA55954.1}))
HSP 1 Score: 1065.45 bits (2754), Expect = 0.000e+0
Identity = 567/961 (59.00%), Postives = 695/961 (72.32%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSS--VSASPTPQTTPVAAETAAYSALTSG-----------ESA--AAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVTASSSN-----------SVTALSE-----GIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQ-CDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQE---ELNFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANA---VGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MSKMKHL RKLHIGGG F D HR+ ++ + + +P PQTT + + T+A S+ ++ ESA + +FEEE+Q+QLALAISVSDP+ RED ETAQIKAAKQ SLG + +E++VEFLS+RYWS+N+VNYD+KVM+GFYD+ +SN QGKMP L+DL+A+ SD+VDYEVILV+R D EL+KLEE+ + ++ + L G MNGL+Q IAD+VVDRMGG V +A+++L+RWT RS E+RNSL ++I+P+GCL+VGLSRHRALLFKVLAD+INLPCMLIKGSYYTGTD+GAVNLIKI +GSE+I+DLMGAPGTLIPAEVPS +LQN G D RS +I++TV V+ ++ V +L E I K D+ NV +KNQ ERFE++FGKLLPSLC+S EG S K S A+ ++VKDVSKYVISAAKNP+FAQKLHAVLLE+GASP D+F + NPQ LGE +L K N+ +G D GAQ L N+EQ + Q N D ++ AQ+ E N+ LP A+ EG V + T D V S+ VA L + + SS N G+P++ L D K+ V NIEK E+ ++L N C+ +NE+ P+LGEVAEWEI WEDLQ+ ERIGIGSYGEV+ A+WNSTEVAVK+FM+QDISGDAL QFKCEVEIMLRLRHPNVVLFMGAVT PPNLSILTEFLPRGSLFKLLHRPNIQLDEKRR+RMALDVAKGMNYLHTS+P+IVHRDLKT NLLVDKNWVVKVCDFG+SR+ H TFLSS STAGTPEWMAPEVLRNELSNEK DV+SFGV+LWELATLR+PW +NSMQVVGAVGFQ+R LD+P+ VDP+V ++I +CW+ QLRPSF Q+I+RL+ QHLV+
Sbjct: 1 MSKMKHLFRKLHIGGG----FHDQHRMASAETRPLVNTPPPQTTSLPSSTSASSSSSAAAAAALARTRAVESAENPVDFNFFEEEFQVQLALAISVSDPDAREDPETAQIKAAKQISLGCAPTETLVEFLSLRYWSHNIVNYDDKVMDGFYDVCCVTSNSVGQGKMPLLMDLQAMSASDNVDYEVILVNRVVDPELQKLEEREYMIYMECRVLEQGTNMNGLIQRIADLVVDRMGGQVGDAEKMLERWTVRSCELRNSLNTIILPLGCLDVGLSRHRALLFKVLADKINLPCMLIKGSYYTGTDEGAVNLIKIGNGSEFILDLMGAPGTLIPAEVPSGHLQNSGSDMRSVANIAETVRDSCPVIEKATGTLVVSPVLDRVAKVGSLKEEASFVNILLKGDEGNVIEKNQTERFEHEFGKLLPSLCRSQEGSSVASGKASTAQNMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFLDMNPQDLGEQKVLEKVNLLNGGKVDDGAQNYLEMLLSNNEQSLISSIEVQSSNNAHCDRKRKHSPEKSAAQKLELESTVINSGHSLPSDTAS-EGFVLVSTGANEMIQTDDVGEGVLVDLSRTVARALHGEQSHESS--SVANYYKGKPKNTLT-VDGYYLKDKVGKVLNNIEKDRESAVRLTEMPNTGLPNVCSAHNERIKPILGEVAEWEILWEDLQIGERIGIGSYGEVYHADWNSTEVAVKKFMDQDISGDALAQFKCEVEIMLRLRHPNVVLFMGAVTHPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRMRMALDVAKGMNYLHTSHPVIVHRDLKTPNLLVDKNWVVKVCDFGLSRMKHDTFLSSNSTAGTPEWMAPEVLRNELSNEKSDVFSFGVVLWELATLRIPWAGLNSMQVVGAVGFQNRRLDIPEAVDPMVAQIITDCWHREPQLRPSFAQLISRLKRLQHLVV 953
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZV50 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1060.44 bits (2741), Expect = 0.000e+0
Identity = 557/965 (57.72%), Postives = 693/965 (71.81%), Query Frame = 0
Match: A0A5J4ZV50 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1060.44 bits (2741), Expect = 0.000e+0
Identity = 557/965 (57.72%), Postives = 693/965 (71.81%), Query Frame = 0
Query: 4 MKHLLRKLHIGGGGADNFADHHRVEASSS--VSASPTPQTTPVAAETA--------AYSALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVTASSSNSVTALS-EGIPS---------------KKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSN-TNPQYLGEDNMLAKCNIYDGNMADWGAQCD-HTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQ-TAQEELNFPNTDFMLPLFVANKEGSVPNYSETT----------------TNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MKHL RKLHIGGG F DHHR+ ++ + V P QTT + ++ A + + + +FEEE+Q+QLAL+ISVSDP+ RED ETAQIKAAKQ SLG S SE++VEFLS+RYW NVVNYDEKVM+GFYD+YG +SNL Q K+P L+DL+A+PVSD+VDYEVILV+R D ELR+LEE+V + ++ + L MNGL+Q IA++VVDRMGGPV +A+E+LKR R++++RNSL ++I+P+GCL+VGLSRHRALLFKVLAD+INLPCML+KGS Y+GTD+GAVNLIKID+GSEYIIDLMGAPGTLIPAEVPS +L N GLD RS D+++TV VV + V + + EGI K D +N +KNQ +RFE++FGKLLPSL +S+E LS K SAA+K+QVKDVSK VISAAKNP+FAQKLHAVLLE+ SPS D+F + NPQ LGE M+ K N+ +G D AQ FL N+EQ +P TG Q++ V D++Q + P+ +A ++L +T V N S+P S+TT T+ D + S+L A L + + SS+ + N G+P+ + ++ V NIEK +E+ + LI N C+ ++E+ P+L EVAEWEIPWE LQ+ ERIGIGS+G+V+RAEWN TEVAVK+FM+QDISGDAL QFKCEVEIMLRLRHPNVVLFMGAVT PNLSILTEFLPRGSLFKLLHRPNIQLDEKRR+RM LDVAKGMNYLHTS+P+IVHRDLKT NLLVD+NWVVKVCDFG+SR+ H+TFLSS S AGTPEWMAPEVLRNE SNEK DVYSFGV+LWELATLR+PW+ +NSMQVVGAVGFQ R LD+P VDP+V ++I +CW+ Q RPSFGQ+I+RLR Q LV+
Sbjct: 1 MKHLFRKLHIGGG----FHDHHRMTSTENLPVVNPPPGQTTSFPSSSSASSPSSPLARTTTVDSVENSVDFNFFEEEFQVQLALSISVSDPDAREDPETAQIKAAKQISLGCSPSETLVEFLSLRYWIYNVVNYDEKVMDGFYDVYGITSNLVAQRKLPLLLDLQAMPVSDNVDYEVILVNRVVDHELRQLEERVYMIYMECRVLEVRPNMNGLIQKIANLVVDRMGGPVGDAEEMLKRCAVRNHQLRNSLNTIILPLGCLDVGLSRHRALLFKVLADKINLPCMLVKGSNYSGTDEGAVNLIKIDNGSEYIIDLMGAPGTLIPAEVPSGHLLNSGLDMRSMADVAETVKDSCLVVEKGTGTVVVSPNLEGIAKVGSSKEEASFVVIQLKGDQRNHLEKNQTDRFEHEFGKLLPSLRRSHEDLSGTSGKASAAQKMQVKDVSKCVISAAKNPEFAQKLHAVLLESSPSPSPDLFLDLMNPQDLGEQKMVEKINLLNGRKVDDEAQSYLEMFLSNNEQSLIPSTGVQVYNYVHCDSQQ--MHYPEESAAQQLELVST-------VINSGHSLP--SDTTSEGFVLVSTGANEMRQTDGGCEDIVPIDLSRLAARALHGEQSHESSVPSSANCNEGKPKYVFAADGGNYLEDKVEKVLNNIEKDKESAVTLIEMLNSGLPNVCSAHSERIKPMLAEVAEWEIPWEGLQIAERIGIGSFGDVYRAEWNGTEVAVKKFMDQDISGDALVQFKCEVEIMLRLRHPNVVLFMGAVTHSPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRMRMTLDVAKGMNYLHTSHPVIVHRDLKTPNLLVDRNWVVKVCDFGLSRMKHNTFLSSKSIAGTPEWMAPEVLRNEPSNEKSDVYSFGVVLWELATLRIPWSGLNSMQVVGAVGFQDRRLDIPKEVDPMVAQIITDCWHLEPQSRPSFGQLISRLRRLQRLVV 950
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124SBR1 ((Armadillo repeat-containing protein 3 and Serine/threonine-protein kinase CTR1 {ECO:0000313|EMBL:KVH91420.1}))
HSP 1 Score: 1032.71 bits (2669), Expect = 0.000e+0
Identity = 555/951 (58.36%), Postives = 680/951 (71.50%), Query Frame = 0
Match: A0A124SBR1 ((Armadillo repeat-containing protein 3 and Serine/threonine-protein kinase CTR1 {ECO:0000313|EMBL:KVH91420.1}))
HSP 1 Score: 1032.71 bits (2669), Expect = 0.000e+0
Identity = 555/951 (58.36%), Postives = 680/951 (71.50%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSSVSASPTPQTTPVAAETA--------AYSALTSGESAAAEEAYFEEEYQMQLALAISVSD--PETRE-DAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTR---------SYT----DISD--TVIGHERVVTASSSNSVTALSEGIPSKKDDK--NVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQCDHTF-LRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQEEL-NFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHL 921
MSKMKHLLRKLHIGGG F DH+ A++ + P P TT + ++ + + + + +S+A + +FEEE+QMQLALAISVS E RE DAETAQIKAAKQRSLG S SES++EFLS+RYWSNNVVNYDEKVM+GFYD+YG +SN TQGKMPSLVDL+A V D+VD+EVILVDR D EL+ LEE+V + L+ A G QI++ ++Q IA+IVV +MGGPVS+ADE+L+RWT+RSYE+RN+ K++I+P+GC++ GLSRHRALLFKVLAD+INL C L+KGSYYTGTDDGAVNLIKID+GSEYIIDLMGAPGTLIP EVP CNLQ+ LD R YT DIS ++ E A + S ++ I S+ + + N ++NQ ERFE DFGKLLP+L +S+EGLS GG + S A+KLQ+ DVSK VI+AAKNP+FAQKLHAVL ++G + S +F + N +GE + ++ D +M + GAQ + N EQ + FT A++ NV +++ V P Q+ + N N + LP S++T+ H + G + DH V+S+ R Y D + G E+ D N K + + M+L+ S SC+ N++ L EV EWEIPWEDLQ+ RIGIGSYGEV+R+EWN TEVAVK+FMNQDISGDAL QFK EVEIMLRLRHPNVVLFMGAVT PPNLSILTEFLPRGSLFKLLHR N+QLDEKRR+RMALDVAKGMNYLHTSNP+IVHRDLKT NLLVDKNWVVKVCDFGMSR+ H+TFLSS STAGTPEWMAPEVLRNE SNEKCDVYSFGVILWELATLR+PW EMNSMQVVGAVGFQ RHLD+P+ +DP+V +I +CW+P QLRPSF +IIARL+ HL
Sbjct: 1 MSKMKHLLRKLHIGGG----FNDHNHRLAATDTPSQP-PATTQFHSSSSPSPLPTVDSLAVVDNNDSSAVDFNFFEEEFQMQLALAISVSSGSAEAREPDAETAQIKAAKQRSLGCSPSESLIEFLSLRYWSNNVVNYDEKVMDGFYDVYGITSNSVTQGKMPSLVDLQAKTVYDNVDFEVILVDRTIDKELQLLEERVSNISLECHASGTSQIISRVIQRIANIVVAQMGGPVSDADEMLRRWTTRSYELRNTHKTIILPLGCIDCGLSRHRALLFKVLADKINLACSLVKGSYYTGTDDGAVNLIKIDNGSEYIIDLMGAPGTLIPVEVPCCNLQSIELDIRRDAAGSDSFGYTLPLLDISTDPILVTPELDGFAKAGTSDLTVTSIIGSQLNSRGGNAVERNQTERFESDFGKLLPALGRSHEGLSGGGGRTSPAQKLQLNDVSKCVINAAKNPEFAQKLHAVLSKSGGTSSDSLF-DVNNDEVGETEVCKTVHLLDTDMLNVGAQHGPPLVMSNYEQDLISFTAAEV-NNVDDNSQLGVNWLPAKQQQLMSNKNNLGYTLP-------------SQSTSAGFVHGHGSTGEDAM------NDHAVVNSIERQYG-------DGVAGGGPCLINEARAD---NTRKGKHSDMKLVETSRIGHYTSCS--NQREGISLDEV-EWEIPWEDLQIGGRIGIGSYGEVYRSEWNGTEVAVKKFMNQDISGDALTQFKGEVEIMLRLRHPNVVLFMGAVTHPPNLSILTEFLPRGSLFKLLHRSNVQLDEKRRMRMALDVAKGMNYLHTSNPIIVHRDLKTPNLLVDKNWVVKVCDFGMSRMKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRIPWTEMNSMQVVGAVGFQFRHLDIPEHLDPVVARIISDCWHPEPQLRPSFKEIIARLKSLGHL 912
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PIQ6 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSR91748.1}))
HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0
Identity = 545/955 (57.07%), Postives = 681/955 (71.31%), Query Frame = 0
Match: A0A2R6PIQ6 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSR91748.1}))
HSP 1 Score: 1030.78 bits (2664), Expect = 0.000e+0
Identity = 545/955 (57.07%), Postives = 681/955 (71.31%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEA----SSSVSASPTPQTTPVAAETAAYSALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTV----------IGH-------ERVVTASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENG-------------ASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQCDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHL 921
MSKMKHLLRKLHIG +DHH+ + + + PTPQ P +A A + + + + +FEEE+Q+QLALAISVSDP+ RED ETAQIKAAKQ SLG S SE++V+ ++++YW+ N VNYDEKVM+GFYD+YG +SN QGK+P L+DL+AI VSD+ +YEVILV+R D L +LEE+V + ++++ L G I++GL+Q IAD+VVDRMGGPVS+ADE+LKRWT R YE+RNSL S+I+P+GCL+VGLSRHRALLFKVLADRINLPCMLIKGSYYTGTD+GAVNLIK D+GSEYIIDLMGAPGTLIPAEVPS LQN GLD R D ++TV IG RV T SSNSV I K+ DKN+ +KNQ ERFE DFGKLLPSL +S+EGLS G K S A+K++VKDVSKYVISAAKNP+FAQKLHAVLLEN ASP+ +F + N L E +L K ++ N+ + L ++EQ +P TG Q S+ E V P+ Q EL F V N S+P+ T+ F + G++++ T + R P+ +++ +V +N+E++++ ++L ++ D ++C+ ++E+ +PVLG+V++WE WEDLQ+ ERIGIGSYGEV+RA+ NSTEVAVK+FM+QDISGDAL QFK EVEIMLRLRHPNVVLFMGAVT PPNLSILTE+LPRGSL+KLLHRPN QLD+KRR+RMALDVA+GMNYLHTS+P IVHRDLKT NLLVDKNWVVKV DFG+SR+ HHTFLSS S AGTPEWMAPEVLRNE SNEK DVYSFGVILWELATLRVPW MNSMQVVGAVGFQ+RHL++ + +DP+ ++I++CW+P Q RPSFGQ+I++LR QHL
Sbjct: 1 MSKMKHLLRKLHIG-------SDHHQQQQIDADARPLVDPPTPQ--PASASALARAGVVDSAENSVDFNFFEEEFQVQLALAISVSDPDAREDRETAQIKAAKQISLGRSPSETLVDSIALQYWNYNFVNYDEKVMDGFYDVYGITSNSDVQGKIPLLIDLQAISVSDNDEYEVILVNRGIDPALHELEERVYAISVEHRVLEQGPIISGLIQRIADLVVDRMGGPVSDADEMLKRWTFRGYELRNSLNSIILPLGCLDVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDEGAVNLIKFDNGSEYIIDLMGAPGTLIPAEVPSDRLQNSGLDRRRSADYAETVKDLCVVLENGIGTVAVSPDLGRVATVGSSNSVETSFSDIKIKRTDKNLDEKNQTERFENDFGKLLPSLRRSHEGLSGSGAKSSDAQKMKVKDVSKYVISAAKNPEFAQKLHAVLLENAESPPPHSVLLEGVASPTPHLFLDMNSYDLREMEILEKIHML--NVENRDRNSPDMSLSSNEQALIPSTGMQ-----SHPAENMV---PE--QLELGF---------TVVNSGHSLPS-DNTSEGFVLVNC---GTNEM---------TRIDDCGR---PV----------------RDTEGEVLDNLEREKQFALRLTETASSDLPVTCSAHDERINPVLGDVSDWETSWEDLQIGERIGIGSYGEVYRADLNSTEVAVKKFMDQDISGDALTQFKSEVEIMLRLRHPNVVLFMGAVTHPPNLSILTEYLPRGSLYKLLHRPNNQLDDKRRVRMALDVARGMNYLHTSHPTIVHRDLKTPNLLVDKNWVVKVSDFGLSRMQHHTFLSSKSIAGTPEWMAPEVLRNEPSNEKSDVYSFGVILWELATLRVPWTGMNSMQVVGAVGFQNRHLEITEEIDPMAAQIIMDCWHPDPQSRPSFGQLISQLRRLQHL 893
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H3P3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1024.62 bits (2648), Expect = 0.000e+0
Identity = 545/957 (56.95%), Postives = 672/957 (70.22%), Query Frame = 0
Match: F6H3P3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1024.62 bits (2648), Expect = 0.000e+0
Identity = 545/957 (56.95%), Postives = 672/957 (70.22%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSSV--------------SASPTPQTTPVAAETAAYSALTSGESAAAEEAYFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGS----ESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDI----SDTVIGHER----------VVTASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGA-QCDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSETTT-NFSTHDANAVGSSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVI 923
MS+MKHLLRKLHIGG + +H R+ + V +A+P+ V A A + AA + ++ EEE+Q+QLALAIS SDP+ R+D ETAQIK AK+ SLG S S E++VE LS+RYW+ N VNYDEKVM+GFYD+YG ++N QGKMP LVDL+AI V D+VDYEVILVDR D +LR+LE+K L ++YQ I++GLVQ IAD+VV+RMGGPV +ADE+LKRWT RSYE+R+SL ++I+P+G L++GLSRHRALLFKVLADRINLPC+L+KGSYYTGTDDGA+NLIKID+GSEYIIDLMGAPG LIPAEVPS + QNFGLD RS TD+ ++++ E+ V SS S A GI SK DD++ +K + ERFE +FG LLPSL K EG S K S A+K++VKDVSKYVISAAKNP+FAQKLHAVLLE+GASP D+FS+ N + E +L + ++ G D G FL NSEQ +P + Q E N N+DF LP S+TT+ F A A G +++ + T + QP +ALV + C +++ + NI ++E+ + L+ +NG +I N ++E+ +P+L EVAEWEIPWEDLQ+ ERIGIGSYGEV+RA+WN TEVAVK+F+ QD SGDAL QF+ EVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSL++LLHR NIQLDEKRRLRMALDVAKGMNYLHTS+P IVHRDLK+ NLLVDKNWVVKVCDFG+SRL HHTFLSS STAGTPEWMAPEVLRNE SNEKCDVYSFGVILWELATLR+PW+ MN MQVVGAVGFQ R L++P+ VDP+V ++I +CW + RPSF Q+++RL+ QHLV
Sbjct: 1 MSRMKHLLRKLHIGG----SLNEHQRIPETRPVINPSPSPNQSSPVAAAAPSSALGSVGGGDAVDRAAVDSQDAAVDFSFLEEEFQVQLALAISASDPDARDDRETAQIKVAKRISLGCSPSTTDTETLVELLSLRYWNYNAVNYDEKVMDGFYDVYGITANSVVQGKMPLLVDLQAISVLDNVDYEVILVDRMIDPDLRELEDKAYSLSMEYQVSDQLTILDGLVQKIADMVVERMGGPVGDADEMLKRWTIRSYELRSSLNTIILPLGRLDIGLSRHRALLFKVLADRINLPCLLVKGSYYTGTDDGAINLIKIDNGSEYIIDLMGAPGALIPAEVPSSHHQNFGLDVRSCTDVIEAARESLLVPEKGTGFSPNLDVVSKPGSSKSEEAPFIGIRSKGDDRSPVEKFETERFENEFGNLLPSLRKLCEGSSGTCGKASPAQKMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFSDINSRGQVEQKVLEQIHMAKGKQVDHGVWYSPGEFLLNSEQPLMP-----------------------SHQVETNVTNSDFSLP-------------SDTTSEGFILIGAGANG-------MIRTNATGETC--------QRQPENALVSDGGPCFQDNIGRILSNIGTEKESALGLMETANGALHIPSNAHSEQINPMLAEVAEWEIPWEDLQIGERIGIGSYGEVYRADWNGTEVAVKKFLAQDFSGDALVQFRYEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLYRLLHRSNIQLDEKRRLRMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRIPWSGMNPMQVVGAVGFQDRRLEIPEEVDPMVAQIINDCWEVEPRKRPSFSQLMSRLKHLQHLVF 902
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RNH3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1004.59 bits (2596), Expect = 0.000e+0
Identity = 542/963 (56.28%), Postives = 676/963 (70.20%), Query Frame = 0
Match: A0A5N6RNH3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1004.59 bits (2596), Expect = 0.000e+0
Identity = 542/963 (56.28%), Postives = 676/963 (70.20%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRV-EASSSVSASPTPQTTPVAAETAAYSALTSGESAAAEEA-------------YFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSG----SESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFKVLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTVIGHERVVTASSSNSVTALS---------EGIPSKKDDKN-VG---DKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSNTNPQYLGEDNMLAKCNIYDGNMADWGAQCD-HTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQ-EELNFPNTDFMLPLFV-ANKEGSVPNYSETTTNFSTHDANAVG-----SSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVIA 924
MSKMKH+LRKLHIGGG +HHR EA S + SP+P + A+ ++A + T G A E A EEE+QMQ+ALAIS SDP+ RED ETAQI AAK+ SLG + S+++V+FLS+RYWS NVVNY EKVM+GFYD+YG +S L TQGKMP LVDL+AI +SD+VDYEVILV+R D+EL+KLE++ + ++ G I++GL+Q IAD+VVDRMGG V +ADE+L+RW+ RS+E+RNSL ++I+P+GCL++GLSRHRALLFKVLADRINLPCML+KGSYYTGTDDGAVN IK+++GSEYIIDLMGAPG LIPAEVP+ L NFG D RS+ D VIG R ++ + L+ E SK D+ + VG ++NQ ERFEY + KLLPSL KS E S K S+A+K +VKDVSKYVISAAKNP+FAQKLHAVLLE+GASP D+FS+ NP LGE L ++ + + QC FL N EQ V +T +L NV+ D Q + Q +EL + L +G V S T F T DA V Q+VA L + S L A + Q A V +D C ++ +IE +E+ ++L+ +N + + +E S+PV EVAEWEI WEDLQ+ ERIGIGSYGEV+RA+WN TEVAVK+F++QD+SGDAL Q KCEVEIMLRLRHPNVVLFMGAVTRPP+ SILTEFLPRGSL+++LHRPN ++EKRR+RMALDVAKGMNYLHTS+P IVHRDLK+ NLLVDKNWVVKVCDFG+SR+ HHTFLSS STAGTPEWMAPEVLRNE +NEKCDVYSFGVILWEL+TL +PW +N MQVVGAVGFQ++ L++P+ VDP V ++I +CW QLRPSF Q+++RLR Q LV++
Sbjct: 1 MSKMKHILRKLHIGGG----INEHHRFGEARPSTNPSPSPSPSTPASSSSATGSATMGRIGAVEPADDRTAVDGCVDFNLLEEEFQMQMALAISASDPDAREDPETAQINAAKRISLGCAAPVPDSQAIVKFLSLRYWSYNVVNYHEKVMDGFYDVYGITSKLDTQGKMPLLVDLQAISISDNVDYEVILVNRLADLELQKLEKRASTISMECPVSEHGPILSGLIQKIADLVVDRMGGVVRDADEMLRRWSERSFELRNSLNTIILPLGCLDIGLSRHRALLFKVLADRINLPCMLVKGSYYTGTDDGAVNFIKMENGSEYIIDLMGAPGILIPAEVPNSQLPNFGFDMRSFVD----VIGTTRDMSLAVDEGTRTLAVPPDLGRVLEFGSSKSDEASAVGIQTEENQTERFEYQWDKLLPSLHKSCESSSGTHGKASSAQKKKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFSDINPHDLGEQKALEPNDMVNSRSIENEVQCGPEKFLSNHEQSLVSYTRVELLNNVNCDKMQKLSAEWLAKQHKELETSTITSGISLSSEPTAQGFVLIGSGTNEPFQT-DAMGVNMVTINHPQMVARPLHEEQFHESFLDTAADSCQRQRNIASVSDDKECFQDKIGRAFSDIEYSKESSVKLLETTNNGLGVVSDANSEGSNPVPREVAEWEIRWEDLQIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGDALAQVKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRILHRPNPPIEEKRRMRMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHHTFLSSKSTAGTPEWMAPEVLRNERANEKCDVYSFGVILWELSTLGIPWKGLNPMQVVGAVGFQNKRLEIPEEVDPAVAQIINDCWQTDPQLRPSFSQLMSRLRHLQRLVVS 954
BLAST of XM_017373869.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GSU0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7138375.1}))
HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0
Identity = 542/966 (56.11%), Postives = 662/966 (68.53%), Query Frame = 0
Match: A0A834GSU0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7138375.1}))
HSP 1 Score: 1002.66 bits (2591), Expect = 0.000e+0
Identity = 542/966 (56.11%), Postives = 662/966 (68.53%), Query Frame = 0
Query: 1 MSKMKHLLRKLHIGGGGADNFADHHRVEASSSVSASPTPQTTPVAAETAAYSALTSGESAAAEEA----YFEEEYQMQLALAISVSDPETREDAETAQIKAAKQRSLGLSGSESVVEFLSVRYWSNNVVNYDEKVMNGFYDIYGGSSNLTTQGKMPSLVDLEAIPVSDSVDYEVILVDRANDIELRKLEEKVVGLLLDYQALGAGQIMNGLVQIIADIVVDRMGGPVSNADELLKRWTSRSYEVRNSLKSVIIPIGCLEVGLSRHRALLFK-VLADRINLPCMLIKGSYYTGTDDGAVNLIKIDDGSEYIIDLMGAPGTLIPAEVPSCNLQNFGLDTRSYTDISDTV-------------------IGHERVVTASSSNSVTALSEGIPSKKDDKNVGDKNQMERFEYDFGKLLPSLCKSNEGLSSGGEKPSAAKKLQVKDVSKYVISAAKNPDFAQKLHAVLLENGASPSSDMFSN---TNPQYLGEDNMLAKCNIYDGNMADWGAQCDHTFLRNSEQCFVPFTGAQLFENVSYDTEQNVIKRPQTAQEELNFPNTDFMLPLFVANKEGSVPNYSETTTNFSTHDANAVG----------SSQLVASVLQADHTSVSSLSRAYNPINGQPRDALVGNDALCSKESTTDVSENIEKQEETCMQLITKSNGDQNISCNTYNEKSSPVLGEVAEWEIPWEDLQVFERIGIGSYGEVFRAEWNSTEVAVKRFMNQDISGDALDQFKCEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLFKLLHRPNIQLDEKRRLRMALDVAKGMNYLHTSNPMIVHRDLKTLNLLVDKNWVVKVCDFGMSRLLHHTFLSSTSTAGTPEWMAPEVLRNELSNEKCDVYSFGVILWELATLRVPWNEMNSMQVVGAVGFQHRHLDVPDWVDPLVTELILECWNPVAQLRPSFGQIIARLRCFQHLVIAEKRKA 929
MSKMKHLLRKLHI HHRV+ P ++ + + + E AAAE +FEEE+Q+QLALAISVSDP++R+D ETAQIKAAKQ SLG + SE++VE LS+RYWS N VNYDEKVM+GFYD+YG SSN QG MP L+DL+AI VSD VDYEVILV+RA D LR+LEE+V + ++ + G I +GL+Q IAD+VVDRMGG VS+ADE+LKRWT R YE+R SLKS+I+P+GCL+VGLSRHRALLFK VLAD I+LPCML+KGSYYTGTD+GAVNLIK D SEYIIDLMGAPGTLIPAE+PS +LQN GLD RS +D ++TV +G RV SS+ A GI +K + KNV +KN+ E+FE +FGKLLPSL +SNEGLS K S A+K++VKDVSKYVISA+KNPDFAQKLHAVLLEN SP + T+P+ + + + D M + L N E+ D QN P+ + N N P EG V N T++ N G S + L + SS+ A + GQ + G+ + V N E++ E ++L ++ ++C+T+ E+ +P LG+V++WEIPWEDLQ+ ERIGIGSYGEV+RA+WN TEVAVK+FM+QDISGDAL QF+ E EIMLRLRHPNVVLFMGAVT PPNLSILTE+LPRGSL+KLLHRPN QLDEKRR+RMALDVAKGMNYLHTS+P IVHRDLKT NLLVDKNWVVKVCDFG+SR+ HHTFLSS S AGTPEWMAPEVLRNE SNEK DVYSFGVILWELATLRVPW MNSMQVVGAVGFQ+RHL++ + ++P ++IL+CW+P QLRPSFGQ+I+RLRC Q L I+ +++
Sbjct: 1 MSKMKHLLRKLHI--------HHHHRVDPPPPPPPLPPSSAASSSSPSDSALTARTREPAAAENPADFNFFEEEFQVQLALAISVSDPDSRDDPETAQIKAAKQISLGCAPSETLVESLSLRYWSFNFVNYDEKVMDGFYDVYGISSNSGVQGNMPLLLDLQAITVSDKVDYEVILVNRAIDPALRELEERVYAISVEQRDSEQGCI-SGLIQRIADLVVDRMGGQVSDADEMLKRWTLRGYELRKSLKSIILPLGCLDVGLSRHRALLFKVVLADTISLPCMLVKGSYYTGTDEGAVNLIKFDSRSEYIIDLMGAPGTLIPAELPSDHLQNSGLDRRSGSDYAETVKILCPVLEKQIEPVTFSPNVG--RVAKDGSSDLAEASFLGIQTKGNGKNVDEKNRTEKFENEFGKLLPSLRRSNEGLSGTCGKASDAQKMKVKDVSKYVISASKNPDFAQKLHAVLLENIPSPPPHSVLSAKVTSPRLILDKKF---HELRDAQMP------EEIHLLNCEKV--------------ADGAQNCADVPEKLELASNAANFGQSFPSDTTTSEGFV------LVNCGTNEVNQTGDVSFGLFPVDSPGIFVRALHGVQSQESSMPSATDCFEGQSKVVFSGDGGRYVGDKVGRVLNNFEREREFVVRLTETASSGLTVACSTHVERINPELGDVSDWEIPWEDLQIGERIGIGSYGEVYRADWNGTEVAVKKFMDQDISGDALAQFRSEAEIMLRLRHPNVVLFMGAVTHPPNLSILTEYLPRGSLYKLLHRPNNQLDEKRRVRMALDVAKGMNYLHTSHPTIVHRDLKTPNLLVDKNWVVKVCDFGLSRMQHHTFLSSKSIAGTPEWMAPEVLRNEPSNEKSDVYSFGVILWELATLRVPWTGMNSMQVVGAVGFQNRHLEITEEINPTAAQIILDCWHPNPQLRPSFGQLISRLRCLQGLQISAVQRS 926
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5A266 | E-Value: 0.000e+0, PID: 58.86 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7ALK6 | E-Value: 0.000e+0, PID: 58.94 | (Putative serine/threonine-protein kinase EDR1 {EC... [more] |
| A0A5B7AGN7 | E-Value: 0.000e+0, PID: 58.28 | (Putative serine/threonine-protein kinase EDR1 {EC... [more] |
| A0A5B7AI21 | E-Value: 0.000e+0, PID: 59.00 | (Putative serine/threonine-protein kinase EDR1 {EC... [more] |
| A0A5J4ZV50 | E-Value: 0.000e+0, PID: 57.72 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A124SBR1 | E-Value: 0.000e+0, PID: 58.36 | (Armadillo repeat-containing protein 3 and Serine/... [more] |
| A0A2R6PIQ6 | E-Value: 0.000e+0, PID: 57.07 | (Serine/threonine-protein kinase {ECO:0000313|EMBL... [more] |
| F6H3P3 | E-Value: 0.000e+0, PID: 56.95 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5N6RNH3 | E-Value: 0.000e+0, PID: 56.28 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A834GSU0 | E-Value: 0.000e+0, PID: 56.11 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7138... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |