XM_017383602.1

Resource Type: 
Polypeptide
Name: 
XM_017383602.1
Identifier: 
XM_017383602.1-protein
Sequence: 
MEENEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENE
YHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLG
MILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGI
RSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYI
QEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVA
SYKKRRFTITPDINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTA
DGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQAL
SMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHL
TSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSEPVVNMSVFWLIL
PNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAM
LNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWA
YGPCELVAVKDSQKER
Sequence Length: 
566
Sequence Checksum: 
48bdbd032ec706d85879a86362001a28
View location in JBrowse: 
DCARv2_Chr1:48415231..48417557+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017383602.1, derives from mRNA, XM_017383602.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BB38 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1002956.1}))

HSP 1 Score: 1003.43 bits (2593), Expect = 0.000e+0
Identity = 485/562 (86.30%), Postives = 521/562 (92.70%), Query Frame = 0
 
Query:    1 MEENEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTI-TPDINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSEPVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCELVAVKD 561
            MEENEP LESNKQK+  GF+TL+CIIANESLEKAA FGL+AN+ILYLENEYHMGLVTGTNIINLWGAA NFLP+PGAFLADS VGRYPMIA GS+F LLGMILVWLTT+IP+ARPP+CD+LT +C+SST  QVIFLC SLGLT+IGAGGIRSASMAFGADQFVK+Y++E+SL ALE+YFGWYY+ASAVAVIISLTFVAYIQEHSGWQVG GVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSF QVIVASYK R FT+ + + NNVYY+KKESALV PS+KLRFLNKAC+V EPER      +IQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHIT  FEIPAASLGVFTFISAISSVVLYDRVIVPLASRIM KPFHLTSKTKMG GI +SILSM+VLAYIEY+RRG+A +QG SE VVNMSV WLILPNCL G+AEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNI+DQVTRR GK SWISSNINQGHYDYYFLM+AGMCVVNMLYYL+CSWAYGPCELVAV D
Sbjct:    1 MEENEPFLESNKQKNSSGFKTLSCIIANESLEKAATFGLTANMILYLENEYHMGLVTGTNIINLWGAASNFLPLPGAFLADSTVGRYPMIAAGSIFSLLGMILVWLTTIIPQARPPVCDMLTTQCTSSTTFQVIFLCVSLGLTSIGAGGIRSASMAFGADQFVKKYDKEKSLVALETYFGWYYIASAVAVIISLTFVAYIQEHSGWQVGFGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFFQVIVASYKNRHFTLASGENNNVYYNKKESALVFPSEKLRFLNKACLVGEPER------EIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITSSFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMGKPFHLTSKTKMGIGILISILSMVVLAYIEYIRRGIANKQGFSEAVVNMSVLWLILPNCLTGMAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIIDQVTRRRGKPSWISSNINQGHYDYYFLMVAGMCVVNMLYYLLCSWAYGPCELVAVND 556
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PIT7 ((Protein NRT1/ PTR FAMILY 1.2 like {ECO:0000313|EMBL:PSR91786.1}))

HSP 1 Score: 624.394 bits (1609), Expect = 0.000e+0
Identity = 302/557 (54.22%), Postives = 407/557 (73.07%), Query Frame = 0
 
Query:    4 NEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITPD--INNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSEPV---VNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCE 555
             EPLL      S GGFRT+  IIANE+ EK A+FGL  N+ILYL NEYHM + TG+NI+  W AA NFLPV GA +ADS VGR+ M   GS+  L+GM+L+WLTT+IP+ +PP CD   + C S T  Q+I LC S  L +IGAGGIRS+S+AFGADQ ++ ++  +   ALESYF WYYV+ + +V++++T V YIQ++ GW+VG GVP +LML+ V+ FF ASS Y++ + KSSL     QV+VA+YK R F ++    ++ +Y++KK S LVVP++KLRFLNKACI+ +P + LT +G   +PWSLCTV+QVEELKA++KVIP+WSTG++LS+   Q S Q++QA SMDRHITP FEIPA S  +F  IS    + LYDR+I+PLAS+IM+KP  LT+K +MG G+F S LSM+V A++E +RR  AT+QG S  +   V MS  WL+   CL G+AEA NAVGQ EF++SEFP+SMSSI   L G+      LVA+ ++++V+ VT RGG  SW+SS+IN+GH DYY+ ++AG+ +VN+ Y++VCS AYGPCE
Sbjct:   14 KEPLL---GNPSKGGFRTMPFIIANEAFEKVASFGLLPNMILYLMNEYHMDMATGSNILFFWSAATNFLPVLGAVIADSSVGRFRMTGFGSIVSLMGMVLLWLTTMIPQTKPPPCDQSISHCISPTTAQLILLCSSFALMSIGAGGIRSSSLAFGADQ-LENHDGLKKAGALESYFNWYYVSVSFSVLVAVTCVVYIQDNIGWEVGFGVPVMLMLVSVVSFFLASSIYVKLKPKSSLLIGIVQVVVAAYKNRHFVLSSSQSMDVLYHYKKGSMLVVPTEKLRFLNKACIIRDPHQDLTDEGRASNPWSLCTVEQVEELKALIKVIPLWSTGIMLSIAGGQSSFQVLQASSMDRHITPTFEIPAGSFSMFLLISVTLWIALYDRLILPLASKIMKKPVRLTAKQRMGIGLFFSFLSMVVTAFVESIRRATATRQGQSGDILSPVAMSALWLVPQYCLCGLAEAFNAVGQNEFYFSEFPRSMSSIAGNLFGVGMGTASLVASFIMSMVNDVTGRGGSESWVSSDINKGHLDYYYWVLAGLSLVNVFYFVVCSRAYGPCE 566
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5M9D1 ((Uncharacterized protein {ECO:0000313|EMBL:TKR65609.1}))

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 299/578 (51.73%), Postives = 408/578 (70.59%), Query Frame = 0
 
Query:    1 MEEN--EPL--------LESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITP-DINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGL---SEPVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCELVAVKDSQK 564
            ME+N  EPL          +  + S GG  T+  IIANE+ EK A++GL  N+ILYL  +Y +G+  GTNI+ LW A  NF+P+ GA ++DS +GR+  I +GS+  LLGMIL+WLT ++P+ RPP CDI T  C + T  Q+  L  S  L +IGAGG+R  S+AFGADQ   + N +     LES+FGWYY ++A++V+ISLT + YIQ+H GW+VG GVPA+LM L  LLFF AS FY++ +   SLFT F QV V +YK R+    P D +  Y+HK++S  + P+ KLRFLNKACI+  PE+ + +DG   +PWSLCT++QVEELKA+LKVIP+WSTG+++S+ +SQ + QL+QA SMDRHI+  F+IPA S G+FT IS  + V+LYDR I+PLAS+I  KP  L +K +MG G+FLS ++M+V A +E +RR  A ++G    +  V++MS  WL+  +CL G+AEA NA+GQ EF+YSEFPKSMSSI + L GL   V  L+A+A+LN VD++T RGGK SW+S+NIN+GHYD Y+ ++A M  VN+LY+LVCSWAYGPC    +K S +
Sbjct:    1 MEKNMEEPLSSQGEMTHQHTTPKHSKGGLITMPFIIANEAFEKVASYGLIPNMILYLMRDYSVGVAKGTNILFLWTAGTNFMPILGALISDSYLGRFLTIGLGSISSLLGMILLWLTAMVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNPKNE-RVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASPFYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKACIIRNPEQDIASDGTASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGIGLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQHCLNGLAEAFNAIGQTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILNAVDKLTSRGGKESWVSNNINKGHYDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDE 577
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2ESC5 ((Uncharacterized protein {ECO:0000313|EMBL:NUU87088.1}))

HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 300/578 (51.90%), Postives = 407/578 (70.42%), Query Frame = 0
 
Query:    1 MEEN--EPLLESNK--------QKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITP-DINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGL---SEPVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCELVAVKDSQK 564
            ME+N  EPL    +        + S GG  T+  IIANE+ EK A++GL  N+ILYL  +Y +G+  GTNI+ LW A  NF+P+ GA L+DS +GR+  I +GS+  LLGMIL+WLT ++P+ RPP CDI T  C + T  Q+  L  S  L +IGAGG+R  S+AFGADQ   + N +     LES+FGWYY ++A++V+ISLT + YIQ+H GW+VG GVPA+LM L  LLFF AS FY++ +   SLFT F QV V +YK R+    P D +  Y+HK++S  + P+ KLRFLNKACI+  PE+ + +DG   +PWSLCT++QVEELKA+LKVIP+WSTG+++S+ +SQ + QL+QA SMDRHI+  F+IPA S G+FT IS  + V+LYDR I+PLAS+I  KP  L +K +MG G+FLS ++M+V A +E +RR  A ++G    +  V++MS  WL+  +CL G+AEA NA+GQ EF+YSEFPKSMSSI + L GL   V  L+A+A+LN VD++T RGGK SW+S NIN+GHYD Y+ ++A M  VN+LY+LVCSWAYGPC    +K S +
Sbjct:    1 MEKNMEEPLSSQGEMTHQHTAPKHSKGGLITMPFIIANEAFEKVASYGLIPNMILYLMRDYSVGVAKGTNILFLWTAGTNFMPILGALLSDSYLGRFLTIGLGSISSLLGMILLWLTAMVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNPKNE-RVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASPFYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKACIIRNPEQVIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGIGLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQHCLNGLAEAFNAIGQTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILNAVDKLTSRGGKESWVSDNINKGHYDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDE 577
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9GG51 ((Uncharacterized protein {ECO:0000313|EMBL:PNT55306.1}))

HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0
Identity = 298/578 (51.56%), Postives = 407/578 (70.42%), Query Frame = 0
 
Query:    1 MEEN--EPL--------LESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITP-DINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGL---SEPVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCELVAVKDSQK 564
            ME+N  EPL          +  + S GG  T+  IIANE+ EK A++GL  N+ILYL  +Y +G+  GTNI+ LW A  NF+P+ GA ++DS +GR+  I +GS+  LLGMIL+WLT ++P+ RPP CDI T  C + T  Q+  L  S  L +IGAGG+R  S+AFGADQ   + N +     LES+FGWYY ++A++V+ISLT + YIQ+H GW+VG GVPA+LM L  LLFF AS FY++ +   SLFT F QV V +YK R+    P D +  Y+HK++S  + P+ KLRFLNKACI+  PE+ + +DG   +PWSLCT++QVEELKA+LKVIP+WSTG+++S+ +SQ + QL+QA SMDRHI+  F+IPA S G+FT IS  + V+LYDR I+PLAS+I  KP  L +K +MG G+FLS ++M+V A +E +RR  A ++G    +  V++MS  WL+   CL G+AEA NA+GQ EF+YSEFPKSMSSI + L GL   V  L+A+A+L+ VD++T RGGK SW+S+NIN+GHYD Y+ ++A M  VN+LY+LVCSWAYGPC    +K S +
Sbjct:    1 MEKNMEEPLSSQGEMTHQHTTPKHSKGGLITMPFIIANEAFEKVASYGLIPNMILYLMRDYSVGVAKGTNILFLWTAGTNFMPILGALISDSYLGRFLTIGLGSISSLLGMILLWLTAMVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNPKNE-RVLESFFGWYYASAAISVLISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASPFYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKACIIRNPEQDIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLASKIKGKPVQLGAKLRMGIGLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQYCLNGLAEAFNAIGQTEFYYSEFPKSMSSIAAALFGLGMAVANLLASAILSAVDKLTSRGGKESWVSNNINKGHYDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDE 577
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DJE8 ((Major facilitator superfamily protein {ECO:0000313|EMBL:GFS35416.1}))

HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 299/557 (53.68%), Postives = 405/557 (72.71%), Query Frame = 0
 
Query:    4 NEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITPD--INNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSEPVVN---MSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCE 555
             EPLL      S GGFRT+  IIANE+ E+ A+FGL  N+ILYL NEYHM + TG+NI+  W AA NFLPV GA +ADS VGR+ M   GS+  L+GM+L+WLTT+IP+ +PP CD   + C S T  Q+I LC S  L +IGAGGIRS+S+AFGADQ ++ +   +   ALESYF WYYV+ + +V++++T V YIQ++ GW+VG GVP +LML+ V+ FF ASS Y++ + KSSL     QV+VA+YK R F ++    ++ +Y++KK S LVVP++KLRFLNKACI+ +P + LT +G   +PWSLCTV+QVEELKA++KVIP+WSTG++LS+   Q S Q++QA SMDRHIT  FEIPA S  +F  IS    + LYDR+I+PLAS+IM+KP  LT+K +MG G+F S LSM+V A +E +RR  AT+QG S  +++   MS  WL+   CL G+AEA NAVGQ EF++SEFP+SMSSI   L G+      LVA+ ++++V+ VT RGG  SW+SS+IN+GH DYY+ ++AG+ +VN+ Y++VCS AYGPCE
Sbjct:   14 KEPLL---GNPSKGGFRTMPFIIANEAFERVASFGLVPNMILYLMNEYHMDMATGSNILFFWSAATNFLPVLGAVIADSSVGRFRMTGFGSIVSLMGMVLLWLTTMIPQTKPPPCDQSISHCISPTTSQLILLCSSFSLMSIGAGGIRSSSLAFGADQ-LENHEGLKKAGALESYFNWYYVSVSFSVLVAVTCVVYIQDNIGWEVGFGVPVMLMLVSVVSFFLASSIYVKLKPKSSLLIGIVQVVVAAYKNRHFVLSSSQSMDVLYHYKKGSMLVVPTEKLRFLNKACIIRDPHQDLTDEGRASNPWSLCTVEQVEELKALIKVIPLWSTGIMLSIAGGQSSFQVLQASSMDRHITSTFEIPAGSFSMFLLISVTLWIALYDRLILPLASKIMKKPVRLTTKQRMGIGLFFSFLSMVVTALVESIRRATATRQGQSRDILSPIAMSALWLVPQYCLCGLAEAFNAVGQNEFYFSEFPRSMSSIAGNLFGVGMGTASLVASFIMSMVNDVTGRGGSESWVSSDINKGHLDYYYWVLAGLSLVNVFYFVVCSRAYGPCE 566
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UA72 ((protein NRT1/ PTR FAMILY 1.2 isoform X1 {ECO:0000313|RefSeq:XP_011090875.1}))

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 303/563 (53.82%), Postives = 403/563 (71.58%), Query Frame = 0
 
Query:    1 MEEN-----EPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITPDINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQG-LSEPV--VNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCE 555
            MEE      E LLE   QK  GGFRTL  II  E+LEK A FGL  N+ LYL  EYHMG+ T +N++  W AA NF+P+ GA +ADS +GR+  I +GSV  L+GMIL+W TTVIP+ARPP C      CSS T  Q ++LC + GL ++GAGGIRS+S+AFGADQ +++ + ++S    +SYFGWYY +   +V+I+LT V YIQ++ GW VG  VPAVLML+GV +FF AS FY++ + K+SL T F QV+ ASY+ RR  +T  + NV + K  SALV PS+ LRFLNKACIV +P++ LTA+G   +PWSLC+V+QVEELKA+L+V+P+WSTG+I+S+ +SQ S  L+QA+SMDR IT  F IPAAS   FT IS I  V +YDRV +PLASR+M +P H+++K +MG GI  S L+ML  A IE +RR LA  +G L  P+    MS  WL+  NCL G AEA NA+ Q EF++SEFP+SMSSI STL G+  ++  L A+ ++N VD +++ GG+ SWISSNIN+GHYDYY+L++A + + NM+Y+LVCS  YGP +
Sbjct:    1 MEEKNTMLEEHLLERTDQK--GGFRTLPFIIGIEALEKMATFGLMPNMTLYLMKEYHMGMTTASNLLFFWSAATNFMPLLGALVADSFLGRFYTIGIGSVISLMGMILLWSTTVIPQARPPPCKQFNNSCSSPTTFQFMYLCTAFGLISVGAGGIRSSSLAFGADQ-LEKGDFKKSSGLKQSYFGWYYASYMFSVLIALTCVVYIQDNMGWGVGFAVPAVLMLIGVSIFFLASRFYVKLKSKTSLVTGFIQVVTASYRNRRLDLTDGVINVCHRKAGSALVFPSENLRFLNKACIVRDPDKDLTAEGRAVNPWSLCSVEQVEELKALLRVLPIWSTGMIMSINISQNSFPLLQAVSMDRRITSSFTIPAASFSTFTVISVILWVAVYDRVFLPLASRVMRRPVHVSTKRRMGIGIVFSFLAMLASAGIEAIRRSLAIDEGYLDHPLAMTQMSAMWLVPQNCLTGFAEASNAIAQNEFYFSEFPRSMSSIASTLNGIGMSLANLAASLIMNAVDSLSKAGGQESWISSNINKGHYDYYYLVLAALSMANMMYFLVCSSMYGPLK 560
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BBA5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA65031.1}))

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 302/560 (53.93%), Postives = 397/560 (70.89%), Query Frame = 0
 
Query:    1 MEENEPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITPDINNVYYHK---KESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQG-LSEP--VVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPC 554
            M + +P     +QK  GG RT+  IIANES EK A++GL  N+ILYL  EY MGL  GTNI+  W AA NF P+ GAFL+DS +GR+  I  GS+F LLGMIL+WLT ++P+ +PP CD     C S TA Q  FL  S  L +IGAGGIR++S+AFGADQ  +R N +     LES+FGWYY ++ V+VII+LT + YIQ+H GW+VG GVPA+LM     LFF AS  YI+ +   SLFT  +QVIV +YK R+  + P  +N +YH    K+S L VP++KLRFLNKACI+  PE  +T  G   +PWSLC VDQVEELKA+LKV+P+WSTG+++S+ +SQ S  L+QA SMDRH+ P FEIPA S G+FT I+    +VLYDRVI+PLAS+I  KP ++  K +MG G+F S ++M+V A +E+ RR  A QQG L+ P  V++MS  WL+  +CL G+AEA NA+GQ EF+YSEFPKSMSSI + L GL   V  L+A+ +L+ VD VT+RGGK SW+S+ IN+G Y+ Y+ ++A M  +N+LY+LVCSWAYGPC
Sbjct:   24 MNQQQP---PTRQK--GGLRTMPFIIANESFEKVASYGLLPNMILYLITEYKMGLAKGTNILFFWSAATNFTPLVGAFLSDSYLGRFLTIGFGSIFSLLGMILLWLTAMLPQVKPPSCDPSIQSCKSPTAAQYTFLFSSFALMSIGAGGIRASSLAFGADQVDRRENPKNE-KVLESFFGWYYASACVSVIIALTGIVYIQDHMGWKVGFGVPAILMFFSAALFFLASPLYIKHKPSKSLFTGLAQVIVVAYKNRKLALPPRNSNGWYHHRKGKDSELQVPTEKLRFLNKACIIRNPE-DITPSGVALNPWSLCAVDQVEELKALLKVLPLWSTGIMVSINISQSSFPLLQAKSMDRHVNPSFEIPAGSFGMFTVITLTIWIVLYDRVILPLASKIKGKPVYIGVKQRMGIGLFFSWMAMVVSAIVEHFRRRKAIQQGFLNNPHGVMDMSAMWLVPQHCLNGLAEAFNAIGQTEFYYSEFPKSMSSIAAALFGLGMAVANLLASVILSTVDDVTKRGGKQSWVSTEINKGRYENYYWLLAMMSFINLLYFLVCSWAYGPC 576
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WPT7 ((Uncharacterized protein {ECO:0000313|EMBL:THG17717.1}))

HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 297/554 (53.61%), Postives = 404/554 (72.92%), Query Frame = 0
 
Query:    5 EPLLESNKQKSYGGFRTLACIIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTITPDINNV-YYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGLSE---PVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPC 554
            +PLL +   +  GG RT+  IIANE+ EK A++GL  N+I+YL NEY M + TG+NI+ LW AA NF+PV GA +ADS VGR+ MI  GS+   LGMIL+WLTT+IP+ARPP CD  +  C+S+T  Q+I LC S GL +IGAGGIRS+S+AFGADQ  K  N  +S +AL+SYF WYYV +A +V I+++ + YIQ++ GWQVG GVPA+LM L  + FF AS FY++ + KSSL   F QVIV SYK R F ++   +NV YYHKK S LVVPS+ LRFLNKACI+ +P++  + DG   D W +CTVDQVEELK+++K+IP+WSTG+++++T+SQ S  ++QA SMDRHIT  FEIPA S G+F  IS    + LYDRVI+PLAS++M KP +L+ K +MG G+  S+LSM+V A +E +RR  A ++G S+    VVNMS  WL+    L G+AEA N +GQ EF++SE P SMSSI +TL G+  ++  L+A+A++N ++ VT RGG  SW+SSNIN+ H+DYY+ ++AG+ +VN+ Y+ VC+  YGPC
Sbjct:   15 QPLLGTTPTQK-GGLRTMPFIIANEAFEKLASYGLIPNMIMYLMNEYDMDMPTGSNILFLWSAATNFMPVLGAVMADSSVGRFRMIGFGSIVSFLGMILLWLTTMIPQARPPSCDQSSYNCTSATPLQLILLCSSFGLMSIGAGGIRSSSLAFGADQLTKHENL-KSCSALQSYFSWYYVTAASSVFIAMSCIVYIQDNVGWQVGFGVPAMLMFLSSVSFFLASPFYVKVKVKSSLVVGFFQVIVGSYKNRHFELSSQSSNVSYYHKKGSMLVVPSENLRFLNKACIIRDPQQDSSPDGRTSDRW-ICTVDQVEELKSLVKLIPLWSTGIMIAITISQNSFPVLQASSMDRHITSNFEIPAGSFGMFLVISLTLWIALYDRVILPLASKVMGKPAYLSPKQRMGIGLCFSVLSMVVTAIVERIRRAKAIEEGYSDNSHAVVNMSALWLVPQYFLSGLAEAFNGIGQNEFYFSELPGSMSSIATTLNGVGMSIANLLASAIMNTINDVTGRGGNESWVSSNINKAHFDYYYWVLAGLSLVNIFYFFVCNRTYGPC 565
[Close]
BLAST of XM_017383602.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835DEX0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8400828.1}))

HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0
Identity = 289/543 (53.22%), Postives = 391/543 (72.01%), Query Frame = 0
 
Query:   25 IIANESLEKAAAFGLSANLILYLENEYHMGLVTGTNIINLWGAAGNFLPVPGAFLADSGVGRYPMIAVGSVFGLLGMILVWLTTVIPEARPPICDILTAECSSSTAPQVIFLCFSLGLTAIGAGGIRSASMAFGADQFVKRYNQEESLAALESYFGWYYVASAVAVIISLTFVAYIQEHSGWQVGLGVPAVLMLLGVLLFFSASSFYIRSQDKSSLFTSFSQVIVASYKKRRFTI-TPDINNVYYHKKESALVVPSDKLRFLNKACIVEEPERHLTADGDIQDPWSLCTVDQVEELKAILKVIPMWSTGVILSVTLSQGSLQLVQALSMDRHITPGFEIPAASLGVFTFISAISSVVLYDRVIVPLASRIMEKPFHLTSKTKMGTGIFLSILSMLVLAYIEYVRRGLATQQGL---SEPVVNMSVFWLILPNCLIGIAEAINAVGQCEFFYSEFPKSMSSIGSTLRGLTFTVGGLVATAMLNIVDQVTRRGGKASWISSNINQGHYDYYFLMIAGMCVVNMLYYLVCSWAYGPCEL--VAVKD 561
            + ANE+ EK A++GL  N+ILYL  +Y MG+ TGTN++  W AA NF+P+ GAFL+DS +GR+  I +GS+  LLGM L+WLT +IP+A+PP C+  +  C S TA Q+ FL  S GL +IGAGGIR  S+AFGADQ  KR N       LE +F WYY ++AV+V+++LT + YIQ+H GW+VG GVPA+LM L  LLFF AS FY++ +   SLF  F+QVIV +YK R  +  + +   +Y+HKK S LV P++KLRFLNKACI+  PE+ +  DG   DPW+LCTV+QVEELKA++KVIP+WSTG+++SV +SQ S  L+QA SMDRH+T  FEIPA S G+FT +S    + +YDRVI+PLAS+I  KP HL  K +MG G+ LS ++M+V A +E VRR  A ++G    +  +VNMS  WL+   C+ G+AEA NA+GQ EF+YSEFPKSMSSI ++L GL   V  L+A+ +L+ VD+VT+RGGK SW+S+NIN+GHY+YY+ ++A    +N +Y+L C WAYGPCE   + VKD
Sbjct:   72 LAANEAFEKVASYGLLPNMILYLMGDYKMGVKTGTNVLFFWSAATNFMPLLGAFLSDSFLGRFLTIGLGSIASLLGMTLMWLTAMIPQAKPPPCNPSSHNCKSPTAAQLAFLYSSFGLMSIGAGGIRPCSLAFGADQLDKRDNPNNE-RVLERFFNWYYASAAVSVLVALTVIVYIQDHMGWKVGFGVPAILMFLSALLFFLASPFYVKMKASKSLFNGFAQVIVVTYKNRSLSFPSQNTTGIYHHKKGSDLVAPTNKLRFLNKACIIRNPEKDINPDGSASDPWTLCTVEQVEELKALIKVIPLWSTGIMISVNISQSSFPLLQAKSMDRHVTSNFEIPAGSFGMFTILSLTLWIGVYDRVILPLASKIRGKPAHLGVKERMGIGLLLSCMAMVVSAVVETVRRRTAIREGFMNDAHALVNMSAMWLVPQYCISGLAEAFNAIGQTEFYYSEFPKSMSSIAASLFGLGMAVANLLASLILSTVDEVTKRGGKESWVSNNINRGHYNYYYWLLAIFSSINFVYFLGCCWAYGPCEEQGIRVKD 613
Match NameStatsDescription
A0A6L5BB38E-Value: 0.000e+0, PID: 86.30(Uncharacterized protein {ECO:0000313|EMBL:KAF1002... [more]
A0A2R6PIT7E-Value: 0.000e+0, PID: 54.22(Protein NRT1/ PTR FAMILY 1.2 like {ECO:0000313|EM... [more]
A0A4U5M9D1E-Value: 0.000e+0, PID: 51.73(Uncharacterized protein {ECO:0000313|EMBL:TKR6560... [more]
A0A6M2ESC5E-Value: 0.000e+0, PID: 51.90(Uncharacterized protein {ECO:0000313|EMBL:NUU8708... [more]
B9GG51E-Value: 0.000e+0, PID: 51.56(Uncharacterized protein {ECO:0000313|EMBL:PNT5530... [more]
A0A7J0DJE8E-Value: 0.000e+0, PID: 53.68(Major facilitator superfamily protein {ECO:000031... [more]
A0A6I9UA72E-Value: 0.000e+0, PID: 53.82(protein NRT1/ PTR FAMILY 1.2 isoform X1 {ECO:0000... [more]
A0A5B7BBA5E-Value: 0.000e+0, PID: 53.93(Uncharacterized protein {ECO:0000313|EMBL:MPA6503... [more]
A0A4V3WPT7E-Value: 0.000e+0, PID: 53.61(Uncharacterized protein {ECO:0000313|EMBL:THG1771... [more]
A0A835DEX0E-Value: 0.000e+0, PID: 53.22(Uncharacterized protein {ECO:0000313|EMBL:KAF8400... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.