XM_017400629.1

Resource Type: 
Polypeptide
Name: 
XM_017400629.1
Identifier: 
XM_017400629.1-protein
Sequence: 
MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPNSSSSGYG
FYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLT
PFVSLDMSPSYTPEGPEFPLKKFSPFMANEKMVVDELPTKSENVSLKLHL
TVEDNSNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTL
KSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLH
QRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLV
PGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDS
KRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVW
HLQIKSPSLYSYPPHWLLKNNLNVVHPLNSQF
Sequence Length: 
432
Sequence Checksum: 
4f69c52917bc66d72ee3a2a7f43bc56e
View location in JBrowse: 
DCARv2_Chr1:48426097..48428714-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017400629.1, derives from mRNA, XM_017400629.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BDR2 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 363/432 (84.03%), Postives = 387/432 (89.58%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPNSSSSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSPFMANEKMVVDELPTKSENVSLKLHLTVEDNSNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPLNSQF 432
            MASIRRTLSPV RPGMLMNGEANL ASPLSRSSSSNQNH   N SSSG GFY VQSFI DFF HKSSRPLEK KLK   WRRAIF FL+CFFLGIFVG+TPF+SLD+SPSYT E P+F LK FSP + NE  V D LPT   NVSL+LHLT+EDNSNVTSD SI PQSFGE  NKLLIIVTPTYARPFEAYYLNRLAHTLKSI PPVLWIVVEMNSQSVETADLLR+TGVMYRHL C+KNLT++K+RSLHQRN+ALSHIEMHRLDG+VFFADDTNIY TELF+QMR IRRLGTWAVAKL+PGT+QIALEGPVCNG  VLGWH++DGRRR RRFHVGMSGFAFNSTILWDSKRWHRP  KPIRQLDTVKEE QVSTF+EQ+VEDESQMEGLPQNCSKVMVWHLQIKSPS YSYPPHW+ KNNLNVVHPL S+F
Sbjct:    1 MASIRRTLSPVPRPGMLMNGEANLAASPLSRSSSSNQNHPPSNGSSSG-GFYKVQSFIQDFFLHKSSRPLEKAKLKSQTWRRAIFHFLLCFFLGIFVGITPFISLDLSPSYTSEEPDFLLKNFSP-LGNETTVTDGLPTTKVNVSLQLHLTIEDNSNVTSDVSIVPQSFGEVFNKLLIIVTPTYARPFEAYYLNRLAHTLKSISPPVLWIVVEMNSQSVETADLLRRTGVMYRHLVCMKNLTDLKFRSLHQRNMALSHIEMHRLDGLVFFADDTNIYATELFQQMRKIRRLGTWAVAKLMPGTNQIALEGPVCNGDQVLGWHTKDGRRRFRRFHVGMSGFAFNSTILWDSKRWHRPTLKPIRQLDTVKEEFQVSTFIEQVVEDESQMEGLPQNCSKVMVWHLQIKSPSSYSYPPHWISKNNLNVVHPLISKF 430
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YG00 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 508.834 bits (1309), Expect = 3.570e-177
Identity = 259/452 (57.30%), Postives = 316/452 (69.91%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPN---SSSSG---YGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSPFMANEKMVVDELPTK----------SENVSLKLHLTVEDNSNVTSDASIAPQSFGE----ALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPLNSQF 432
            MASIRRTLSPV RPG L+NGEA  VASPLS+SSS   N+       SSS G   Y  Y  Q+F+   FS +SSRPLE+ K KG  WRRA F F +CF +GIF GLTPFVS+++S +   +   F  +   P    +    D +PT            +N +L+ HL   +  N   D +   QS  +      +KLLIIVTPTY+RPF+AYYLNRLAHTLK +PPP+LWIVV+M  QS ETAD+LR TGVMYRHL C KN T IK R++HQRN+ALSHIE HRLDGIV+FADD NIY+ +LFE MR IRR GTWAVAKL+ G S+  LEGP+CNG  V+GWH  +  +R RRFH  +SGFAFNST+LWD KRWHRP  +PIRQLDTVKE  QVSTF+EQ+VEDESQMEGL Q+CS++MVWHL ++S   YSYP  W + +NL+V+ PL  +F
Sbjct:    1 MASIRRTLSPVPRPGTLLNGEACSVASPLSKSSSCTPNYPPSGGYLSSSFGSLDYLLYRFQAFVLGLFSQRSSRPLERPKSKGQSWRRAFFHFSICFMIGIFSGLTPFVSMNLSMNLMSKHQAFSFEVIPP--VGKVQFYDVMPTNVTRLVDSLVMDDNATLEPHLMKPELRNRVYDDAFVTQSINQDSDMMFHKLLIIVTPTYSRPFQAYYLNRLAHTLKLVPPPLLWIVVDMAPQSAETADILRTTGVMYRHLVCDKNSTGIKDRAVHQRNVALSHIETHRLDGIVYFADDDNIYSADLFEHMRQIRRFGTWAVAKLLEGKSKAILEGPICNGTQVIGWHMNEVTKRFRRFHAEISGFAFNSTMLWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIEQVVEDESQMEGLLQDCSRIMVWHLHVESS--YSYPHEWSMNSNLDVIAPLARKF 448
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q2V9 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 491.115 bits (1263), Expect = 3.548e-170
Identity = 251/447 (56.15%), Postives = 311/447 (69.57%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPN---SSSSG---YGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSP--------FMANEKMVVDELPTKSENVSLKLHLTVEDNSNVTSDASIAPQSFGEALN----KLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTG-VMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRT+SPV RPG L NGEA  VASPLS+SSS  QN+  P    SSS G   Y  Y  Q+ I   FS + SRPLE+ K KG  WRR++  F +CF  G F+GLTPF S+++S +   +   F  + FSP         M     ++ E    ++N ++ +  T  D  N TSD ++   S  + +N    KLLIIVTPT+ RPF+AYYLNRLAHTL+ IPPP+LWIVV++ SQS ETAD LR+ G ++YRHL C KNLT+IK R  HQRN+ALSHIE HRLDGIV+FADD NIY+ +LFEQMR IRR GTW VAKL+    +  ++GP+CNG  V+GWHS +  RR RRFH  MSGFAFNSTILWD KRWHRP  +PIRQLDT     QVS+F+EQ+VEDESQME LPQ+ S+VMVWHL ++S   YSYPP W++KNNL+V+  L
Sbjct:    1 MASIRRTMSPVPRPGTLPNGEACSVASPLSKSSSCTQNYPPPVGELSSSFGAFDYALYRTQALILGLFSKRYSRPLERPKPKGQFWRRSLVHFFICFMAGAFLGLTPFASMNLSANLMSKHQAFSFEIFSPPEKIQLFDVMPRNVTLLVESSDLNDNTTIGMRETKLDLKNETSDDTLTTPSVSKDVNTVFHKLLIIVTPTHDRPFQAYYLNRLAHTLRLIPPPLLWIVVDIGSQSAETADRLRRNGGILYRHLVCDKNLTDIKDRGAHQRNVALSHIETHRLDGIVYFADDDNIYSVDLFEQMRQIRRFGTWTVAKLMDSNRRAHMQGPICNGTQVIGWHSNEVTRRFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTPNGGFQVSSFIEQVVEDESQMECLPQDHSRVMVWHLHVESS--YSYPPEWVMKNNLDVIASL 445
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PH99 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 488.034 bits (1255), Expect = 5.145e-169
Identity = 247/448 (55.13%), Postives = 310/448 (69.20%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLP------NSSSSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSPFMA---------NEKMVVDELPTKSENVSLKLHLTVEDNSNVTSDASIAPQSFGEALN----KLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTG-VMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV RPG L NGEA  VASPLS+SSS  QN+  P      + S+  Y  Y  Q+ I   F+ + SRPLE+ K KG  WRR++  F +CF +G F+GLTPF S+++S +   +   F  + F P            N  ++VD     ++N +L +  T  D  N TSD ++A QS  E +N    KLLIIVTPT+ RPF+AYY+NRLAHTL+ IPPP+LWIVV+M SQS ETAD+LR+ G ++YRHL C KNLT IK R +HQRN ALSHIE H LDGIV+FADD NIY+ +LFEQMR IRR GTWAVAKL+    +  ++GP+CNG  V+GWHS    RR +RFH  MSGFAFNSTILWD KRWHRP  +PIRQ DT+    Q S+F+EQ+VEDESQME LPQ+ S+++VWHL  +S   YSYPP W++KNNL+V+  L
Sbjct:    1 MASIRRTLSPVPRPGTLSNGEACSVASPLSKSSSCTQNYPPPVGGLSSSCSAFDYALYRTQALILCLFTKRYSRPLERPKPKGQFWRRSLVHFSLCFMVGAFLGLTPFASMNLSANLLSKHQAFSFEIFPPPEKVPLFDVRPRNVTLLVDS-SALNDNTTLGMRETKLDLKNRTSDETLATQSVSEDVNTVFHKLLIIVTPTHDRPFQAYYMNRLAHTLRLIPPPLLWIVVDMGSQSAETADILRRNGGILYRHLVCYKNLTGIKDRGVHQRNAALSHIETHHLDGIVYFADDDNIYSVDLFEQMRKIRRFGTWAVAKLMESNRRAHIQGPICNGTQVIGWHSNQVTRRFQRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQFDTLNGRFQASSFIEQVVEDESQMECLPQDYSRIVVWHLHFESS--YSYPPEWVMKNNLDVIASL 445
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RC65 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 484.567 bits (1246), Expect = 1.931e-167
Identity = 253/457 (55.36%), Postives = 315/457 (68.93%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPNSS---SSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLK------KFSPF---------MANEKMVVDELPTKSENVSLKLHLTVEDN-------SNVTSDASIAPQSFGEALN----KLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV RPG  MNGE   VASPLSRSSS  Q+H  P S    S+       Q+++   FS ++SRPLEK+KLKG VWRRA+FQF +CF +G+F+G TPF S+++S +   +   F          F PF         +  + + + +L TK +NV++K + T+E           ++ D     QSF +       KLLI+VTPT+  PF+AYYL+RLAHTLKSI PP+LWIVVEM SQS ETADLLR+TGVMYRHL C  NLT+++ R +HQRN+ALSHIE H LDGIV+FADD NIYT +LFEQMR IRR G W VAK V   +   LEGPVCNG  VLGWH    R R RRFH  +SGFAFNSTILWD KRWHRP  +PIRQ DT+KE +QVSTF+EQIVEDESQMEGL ++CS++MVWHL ++S + + YP  W +K+NL+V+  L
Sbjct:    1 MASIRRTLSPVPRPGTAMNGEVCSVASPLSRSSSCAQSH--PPSGGLLSALANTLESQAYVFSVFSPRTSRPLEKSKLKGQVWRRALFQFFICFVVGVFIGFTPFSSMNLSTNIMSKHQAFSFDMMSAVGNFQPFDSVSRTDMPLELDNVAMKDLSTK-KNVAMKENSTMESQPKESKPVDGISEDTIGYDQSFLQESELESRKLLIVVTPTFVSPFQAYYLSRLAHTLKSISPPLLWIVVEMTSQSAETADLLRRTGVMYRHLVCNVNLTDVRDRRVHQRNVALSHIETHHLDGIVYFADDDNIYTADLFEQMRQIRRFGVWTVAK-VENKNIAVLEGPVCNGTKVLGWHINGLRWRFRRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQRDTIKEALQVSTFIEQIVEDESQMEGLLEDCSRIMVWHLHLESANDF-YPHAWFMKDNLDVIASL 452
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5G1R9 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 483.411 bits (1243), Expect = 3.082e-167
Identity = 251/443 (56.66%), Postives = 308/443 (69.53%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHT-LPNSSSSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLK------KFSPFMANEKMVVDELPTKS----ENVSLKLHL----TVEDNSNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV RPG+ +NGE   V SPLSRSS+  QNH       SS       Q+F+   FS +SSRPLEK+KLKG VWRR +FQF + F +GIF+G TPF S+++S +   +   F  +      KF P+   + +  ++ P  S    EN +++  L    ++E  S VT       Q       KLLIIVTPTY RPF+AYYLNRLAHTLK I PP+LWIVVEM SQS ETAD+LRKTGVMYRHL C  NLT+++ RS+HQRN+ALSHIE H LDGIV+FADD NIY+T+LFE+MR IRR GTW VAK++   +   LEGPVCNG  V+GWH  + + R RRFH  +SGFAFNSTILWD KRWHRP  +PIRQ DTVKE +QVSTF+EQIVEDESQMEGL Q+CS++ VWHL ++S     YP  W +K NL+V+  L
Sbjct:    1 MASIRRTLSPVPRPGIPLNGEVCSVGSPLSRSSTCAQNHPPSSGLFSSLSSSLESQAFVLSVFSPRSSRPLEKSKLKGQVWRRVLFQFFISFMIGIFIGFTPFSSMNLSMNLMSKHQAFSFEVISAVGKFQPY---DSVTTNDKPLDSGAIKENDTVESQLEESTSIEGISQVTIGNISLIQESDLEFRKLLIIVTPTYTRPFQAYYLNRLAHTLKLISPPLLWIVVEMTSQSAETADILRKTGVMYRHLVCNVNLTDVRDRSVHQRNVALSHIETHHLDGIVYFADDNNIYSTDLFEKMRQIRRFGTWTVAKVMEKKNNPILEGPVCNGTQVIGWHVNEPKWRFRRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQHDTVKEGLQVSTFIEQIVEDESQMEGLEQDCSRIKVWHLHLESAK-SVYPHEWFIKENLDVIASL 439
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5AL24 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 479.945 bits (1234), Expect = 6.914e-166
Identity = 245/440 (55.68%), Postives = 302/440 (68.64%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHT-LPNSSSSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSP---FMANEKMVVDELPTKSENV--------SLKLHLTVEDNSNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV RPG+ ++GEA  V SPLSRSS+  QNH       S        Q+F+   FS +SSRPLEK+KLKG VWRR +FQF + F +GIF+G TPF S+ +S +   +   F  +  S    F   + +  ++ P  S  +         LK   +++  S VT       Q       KLLIIVTPTY RPF+AYYLNRLAHTLK I PP+LWIVVEM SQS ETAD+LRKTGVMYRHL C  NLT+++ RS+HQRN+ALSHIE H LDGIV+FADD NIY+T+LFEQMR IRR GTW VAK++   +   LEGP+CNG  V+GWH  + + R +RFH  +SGFAFNSTILWD KRWHRP  +PIRQ DTVKE ++VSTF+EQIVEDESQMEGL Q+CS++ VWHL ++S     YP  W +K NL+V+  L
Sbjct:    1 MASIRRTLSPVPRPGIPLSGEACSVGSPLSRSSTCAQNHPPSSGLFSFLSSSLESQAFVLSVFSPRSSRPLEKSKLKGQVWRRVLFQFFISFMIGIFIGFTPFSSMTLSMNLMSKHQAFSFEVISAVGNFQPYDSVTTNDKPLDSGAIKENDTVESQLKESTSIDGISQVTIGNISLIQESDLEFRKLLIIVTPTYTRPFQAYYLNRLAHTLKLISPPLLWIVVEMTSQSAETADILRKTGVMYRHLVCNVNLTDVRDRSVHQRNVALSHIETHHLDGIVYFADDNNIYSTDLFEQMRRIRRFGTWTVAKVMEKKNNAILEGPICNGTQVIGWHVNEPKWRFQRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQHDTVKEGLRVSTFIEQIVEDESQMEGLEQDCSRIKVWHLHLESAKSV-YPHEWFIKENLDVIASL 439
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UNC6 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 478.789 bits (1231), Expect = 2.548e-165
Identity = 245/444 (55.18%), Postives = 307/444 (69.14%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLPNSSSSGYGFY-----TVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSPFMANE-------KMVVDELPTKSENVSLKLHLTVEDNSNVTSDASIAPQSFGEALN----KLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRT+SPV R G L+NGEA  VASPLS+SSS  QNH    +SS G   Y       Q+ I    S +SSRPLE+ + K  VWRRA+F FL+CF +G+F+GLTPFVS+++S +   +      +    F  ++        + VD    K+ N +L+    + +  +V SD   A QS  +  +    KL+IIVTPT A+PF+AYYLNRLAHTL+ + PP+LWIVVEM SQS ETAD+LR+TGVMYRHL C KNLT++K   +HQRN+ALSHIE H LDGIV+FAD+ NIY T+LFE++R IRR GTW VAKL        LEGP+CNG  V+GWH  + R R RRFH  MSGFAFNSTILWD KRWHRP  +PIRQ+DTVK+  Q STFVEQIVEDESQMEGL + CS++M W L ++S + + YP  W LKNNL+V+ PL
Sbjct:    1 MASIRRTMSPVPRAGTLLNGEACQVASPLSKSSSCTQNHP---ASSGGLLSYLHSSLDSQALIFGVSSPRSSRPLERARPKAQVWRRALFHFLICFVVGVFIGLTPFVSMNLSTNLMSKQQALTFEMVYAFGNSQTYDGMARNVTVDNDGIKN-NATLESQAEIRELRDVLSDDYSANQSLPQDSDLVSRKLIIIVTPTDAQPFQAYYLNRLAHTLRMVQPPLLWIVVEMTSQSEETADVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVAKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVDTVKDGFQASTFVEQIVEDESQMEGLLEECSRIMAWLLPLESSNAF-YPQKWFLKNNLDVMAPL 439
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AHB5 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 477.248 bits (1227), Expect = 7.573e-165
Identity = 241/442 (54.52%), Postives = 300/442 (67.87%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGEANLVASPLSRSSSSNQNHTLP---NSSSSGYGFYTVQSFISDFFSHKSSR-PLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMSPSYTPEGPEFPLKKFSP---FMANEKMVVDELPTKSENVS-------LKLHLTVEDNSNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV R G  +N EA  VASPLSRSSS  Q+   P      S        Q+F+   FS +SSR  LEKTK KG VWRRA+FQF +CF +G+F+G TPF S+++S +   +   F  +  S    F + +    +  P  +E++        +K    ++ +S   SD     Q       KLLIIVTPTY RPF+AYYLNRLA+TLK I  P+LWIVVEM SQS ETADLLR+TGVMYRHL C  NLT+I+ R++HQRN+ALSHIE HRLDGIV+FADD NIY+T+LFEQMR I+R GTW VAKL    S   +EGP+CNG  V+GWH  +  R+ RRFH  +SGFAFNSTILWD KRWHRP  +PIRQLD VK+  QVSTF+E+IVEDESQMEGL Q+CS++MVW+L ++S +   YP  W +  NL+ +  L
Sbjct:    1 MASIRRTLSPVPRAGTTLNVEACSVASPLSRSSSCAQSQNYPPSSGLLSYLSSSLDSQAFVLSVFSPRSSRFSLEKTKPKGQVWRRALFQFFICFTVGMFIGFTPFASMNLSTNLMSKHQAFSFEMISAVGSFQSYDAASRNVTPADNESMKNATVESKVKEQELIDGSSGYVSDNQSIVQESDLEFQKLLIIVTPTYVRPFQAYYLNRLAYTLKLISTPLLWIVVEMTSQSAETADLLRRTGVMYRHLVCTTNLTDIRDRTIHQRNVALSHIETHRLDGIVYFADDDNIYSTDLFEQMRQIKRFGTWTVAKLAEKKSNAIIEGPICNGTQVIGWHVNESVRKFRRFHADLSGFAFNSTILWDPKRWHRPTLEPIRQLDKVKDGFQVSTFIERIVEDESQMEGLLQDCSRIMVWNLHLESSNSL-YPEEWFMNKNLDAIALL 441
[Close]
BLAST of XM_017400629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3J8A0 (Glycosyltransferases {ECO:0000256|RuleBase:RU363127} (2.4.-.- {ECO:0000256|RuleBase:RU363127}))

HSP 1 Score: 477.248 bits (1227), Expect = 7.839e-165
Identity = 248/446 (55.61%), Postives = 312/446 (69.96%), Query Frame = 0
 
Query:    1 MASIRRTLSPVTRPGMLMNGE-ANLVASPLSRSSSSNQNHTLPNSS---SSGYGFYTVQSFISDFFSHKSSRPLEKTKLKGHVWRRAIFQFLVCFFLGIFVGLTPFVSLDMS---PSYTPEGPEFPL-------KKFSPFMANEKMVVDELPTK---SENVSLKLHLTVEDN-SNVTSDASIAPQSFGEALNKLLIIVTPTYARPFEAYYLNRLAHTLKSIPPPVLWIVVEMNSQSVETADLLRKTGVMYRHLACIKNLTEIKYRSLHQRNLALSHIEMHRLDGIVFFADDTNIYTTELFEQMRLIRRLGTWAVAKLVPGTSQIALEGPVCNGGHVLGWHSRDGRRRSRRFHVGMSGFAFNSTILWDSKRWHRPNPKPIRQLDTVKEEVQVSTFVEQIVEDESQMEGLPQNCSKVMVWHLQIKSPSLYSYPPHWLLKNNLNVVHPL 428
            MASIRRTLSPV R G L+ GE    V SPLS+SSS  QN+  P+S    SS +G    Q+ +   FS +SSRPL+K+K KG VWRRA+F F +CF +G FVGLTPF+S+D S   PS   +   F +       KK      N   ++D+   +   +E   ++   +VE N  N  ++ S+ PQ       KLLI+VTPTY+RPF+AYYLNRLA+TLK + PP+LWIVVEMNSQS ETAD+LRK+ VMYRHL C KNLT+IK R++HQRN+ALSHIE H LDGIV+FA++ NIY+ +LFEQMR IR+ GTW VAK     S+  LEGPVCNG  V+GWH    R R RRFH  +SGFAFNSTILWD KRWHRP  + IRQLDTVK+  Q S+F+EQ+VEDESQMEGL Q+CS++MVW L ++S + + YP  W +KNNL+V+ PL
Sbjct:    1 MASIRRTLSPVPRQGTLITGEPERSVPSPLSKSSSCTQNY--PHSGGLLSSLFGLSDSQALVLGVFSPRSSRPLDKSKQKGQVWRRALFHFFICFMIGFFVGLTPFISMDFSYASPSLKQQAFSFEVVSTVGNFKKLEISATNVTSMMDKTRVENNVTEEALVRRQESVEGNLDNALANQSL-PQDIDLESRKLLIVVTPTYSRPFQAYYLNRLAYTLKLVQPPLLWIVVEMNSQSEETADILRKSSVMYRHLVCKKNLTDIKDRTVHQRNVALSHIETHHLDGIVYFANEDNIYSIDLFEQMRHIRQFGTWTVAKQTWDKSRAILEGPVCNGTQVIGWHLNSLRMRFRRFHADLSGFAFNSTILWDPKRWHRPTLELIRQLDTVKDGFQASSFIEQVVEDESQMEGLLQDCSRIMVWELNLESSNSF-YPTKWSVKNNLDVIAPL 442
Match NameStatsDescription
A0A6L5BDR2E-Value: 0.000e+0, PID: 84.03Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A5B6YG00E-Value: 3.570e-177, PID: 57.30Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A2R6Q2V9E-Value: 3.548e-170, PID: 56.15Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A2R6PH99E-Value: 5.145e-169, PID: 55.13Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
W9RC65E-Value: 1.931e-167, PID: 55.36Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A2P5G1R9E-Value: 3.082e-167, PID: 56.66Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A2P5AL24E-Value: 6.914e-166, PID: 55.68Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
V4UNC6E-Value: 2.548e-165, PID: 55.18Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A6P4AHB5E-Value: 7.573e-165, PID: 54.52Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
A0A1R3J8A0E-Value: 7.839e-165, PID: 55.61Glycosyltransferases {ECO:0000256|RuleBase:RU36312... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.