Resource Type:
Polypeptide
Name:
XM_017375456.1
Identifier:
XM_017375456.1-protein
Sequence:
MDKPEPGSGSGPAKTAARQLDFTAICRASAATAILPDHPQAQLQSKLLAL
ALKRQAEAEPKGNAARPDPEVDPKVKRAVQGDGVVGSGGEKANLSKVESP
KPRQHSHAESIRPQHSHVELLRSRQHINSELKKAESPKPRHPINVELKKT
ESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKL
YCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAK
SPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSE
NCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAFGYIPQAIKKRK
IQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARAT
MLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANEN
AEIDQCETSSTTSNQLHKDKVESRVQVLSGGDKVQTGSSGSDPVDIQHER
AMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGFTDLYAE
QERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNGIKDFKL
QRNGDHLH
Sequence Length:
608
Sequence Checksum:
e1d342a193cdb1932393598669babf2c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017375456.1, derives from mRNA, XM_017375456.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A2I4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 482.256 bits (1240), Expect = 1.180e-161
Identity = 266/472 (56.36%), Postives = 319/472 (67.58%), Query Frame = 0
Match: A0A5B7A2I4 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 482.256 bits (1240), Expect = 1.180e-161
Identity = 266/472 (56.36%), Postives = 319/472 (67.58%), Query Frame = 0
Query: 141 HPINVELKKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQ---------AFGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHKDK-----VESRVQVLSGG--DKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSM-QVMHPSSSQTVREGQQEPLQNGI 595
HP+ + + T P+P ++ K ESPK RQ+ N+E KDGT KKQKQCNCKNSRCLKLYCECFA+GIYC+GCNC NCHNNVEHE+AR+EAVGATLERNPNAFR KIA SPH SQD R Q AGEVT VGKHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H NVM F+Q + FG P A KKRK Q L G + NR AQ E+ LT+ + SS L S+PL + AT+ SS YRS LA I +D +ELCS LV+VSAEA+ LA KK + AE+DQ ETS +S Q KD VE + LSG D+++ GSD ++Q+E AMSPGT LMCDEQD F+ SP+ V GCS+ + S +GFT++YAEQERLVLT F + LNRL+TSGS+ + M ++T QQEP+QNGI
Sbjct: 92 HPVQPQPRLTLQPRP----ALQVFKTESPKSRQRCNIEVKDGTPKKQKQCNCKNSRCLKLYCECFASGIYCDGCNCANCHNNVEHEAARQEAVGATLERNPNAFRPKIANSPHGSQDGREQ--AGEVTVVGKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHGDHANVMEFIQQAANAAINGAIGASGFGTSP-ATKKRKNQQLIFGSTSNDQSINRIAQS-ELESHLTASAASSSLFSVPL-SGTGTATVSGSSKFKYRSPLAGILQPQDVRELCSLLVIVSAEATKTLADKKHIMDRQAEVDQIETSVVSSTQESKDSEKEHDVEDQ---LSGNQTDRIRMDDCGSDGGEVQNEMAMSPGTRALMCDEQDTVFMATGSPTGVAGCSQDTTLKPSYVKGFTEVYAEQERLVLTRFWSFLNRLITSGSIKETMCSPLTKTKTGSQQEPMQNGI 551
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A629 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 461.07 bits (1185), Expect = 1.568e-153
Identity = 261/463 (56.37%), Postives = 313/463 (67.60%), Query Frame = 0
HSP 2 Score: 59.3066 bits (142), Expect = 1.361e-6
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Match: A0A5J5A629 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 461.07 bits (1185), Expect = 1.568e-153
Identity = 261/463 (56.37%), Postives = 313/463 (67.60%), Query Frame = 0
Query: 148 KKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQ---------AFGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHK--DKVESRVQVLSG--GDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKI-SSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREG-QQEPLQNGI 595
KK +P+ + T++ K ESPK RQ+ N+E KDGT KKQKQCNC+NSRCLKLYCECFA+GIYC+GCNCTNCHNNVEHE+AR+EAVGATLERNPNAFR KIA SPH S+D R Q AGEVT VGKHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H NVM F+Q + FG P A KKRK Q L G + NR AQ E+ LT+ SS L + AT+L SS YRS LA I +D +ELCS LVVVS+EA+ LA KK + AE+DQ ETS +S Q K +K LSG D+ Q GSD ++Q++ AMSPGT LMCDEQD F+ A SP+ V GCS+ + SSS +G T++YAEQERLVLT F + LNRL+TSGS++ S + + G QQEP+QNG+
Sbjct: 79 KKVVPGQPQLRPTLQVFKTESPKSRQRCNIEGKDGTPKKQKQCNCRNSRCLKLYCECFASGIYCDGCNCTNCHNNVEHEAARQEAVGATLERNPNAFRPKIANSPHGSRDGREQ--AGEVTMVGKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALCHGDHANVMEFIQQAANAAINGAIGASGFG-TPPATKKRKNQQLVFGYTSNDQSINRIAQS-ELESHLTASGASSSL-LSAPLSGTGTATVLSSSKFKYRSPLAGILQPQDVRELCSLLVVVSSEATKTLADKKHIMDRQAEVDQIETSVVSSTQESKGSEKEHDVEDQLSGNQADRFQMDDCGSDGGEVQNDMAMSPGTRALMCDEQDTEFMAAGSPTGVAGCSQDTTLKSSSYVKGLTEVYAEQERLVLTKFWSFLNRLITSGSIKETMCSPLKKTKTGSQQEPVQNGL 536
HSP 2 Score: 59.3066 bits (142), Expect = 1.361e-6
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query: 12 PAKTAARQLDFTAICRASAATAILPDHPQAQLQSKLLAL 50
P K ARQLDF+A+CRAS AILP+HPQAQLQS+LLAL
Sbjct: 19 PQKKLARQLDFSAMCRASV-NAILPEHPQAQLQSELLAL 56
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DBM7 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 464.537 bits (1194), Expect = 8.408e-151
Identity = 285/627 (45.45%), Postives = 363/627 (57.89%), Query Frame = 0
Match: A0A4S4DBM7 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 464.537 bits (1194), Expect = 8.408e-151
Identity = 285/627 (45.45%), Postives = 363/627 (57.89%), Query Frame = 0
Query: 17 ARQLDFTAICRASAATAILPDHPQAQLQSKLLALA------LKRQAEAEPK-----------------GNAARPDPEVD-PKVKRAVQGDGVVGSGGEKANLSKVESPKPRQHSHAESIRPQHSHVELLRSRQHINSELKKAESPKPRHPINVELKKTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-GYI-------PQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAG----------------------------KKLTANENAEIDQCETSSTTSNQLHKDKVESRVQV------LSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGF-TDLYAEQERLVLTNFLNCLNRLVTSGSMQVMH 576
ARQLDFT +CRASA AILPDHPQAQLQSKLLALA L+ Q ++ P+ + RP P + P VK A Q D V +A+ + + P+ ++ + S L+S+ +L+ P+P+ P+ + + +P+ + T+ ESPK RQ+ N E KDGT KKQKQCNC+NSRCLKLYCECFA+GIYC+GCNCTNCHNNVEH++AR+ AVGATLERNPNAFR KIA SPH+SQD R EA EV+ V KHNKGCNCKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE RAL G+H N ++ +Q + A G I P A KKRK Q L G P++ +++ QE +L + SS L S P+ A+ + + SS YRS LA + +D KELCS LV+ SAEA+ LAG ++ ++ E DQ E S+ +S H+ K+E VQ LSG S SD D Q R +SP T+ LMCDEQD F+ SP CS + SS QGF T+LYAEQERLVL F LNRL+T GS++ ++
Sbjct: 23 ARQLDFTVMCRASA-NAILPDHPQAQLQSKLLALARSQASQLQSQPQSVPQLQIQPRPKQPVPIMPRVAHQGRPQPRLTLPVVKLARQLDFTVMC---RASANAILPDHPQAQLQSKLLALARSQASQLQSQPQTVPQLQI--QPRPKQPVPIMPRVAHQGRPQPRPTLPVVMTESPKSRQRCNTEVKDGTPKKQKQCNCRNSRCLKLYCECFASGIYCDGCNCTNCHNNVEHDAARQLAVGATLERNPNAFRPKIANSPHKSQDGRE--EAEEVSVVAKHNKGCNCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHGDHANFISHVQQATNLAINGAIGTSGLGTPPASKKRKYQQLIFGPTPSDQ-SILGIEQFQQENYLRPSATSSSLLSAPVSCTASAS--MGSSKLTYRSPLADVLRSQDVKELCSLLVIASAEATKVLAGYTKYGGSALYAFIQHKICFLNFNLSFSDRERKMDKQVERDQLEDSAVSS--AHQGKIEGIVQTAIPDDRLSGNQADIADDSISDGSDAQTRRPLSPATIALMCDEQDAMFMAVGSPDAAASCSGNTTLKSSHGQGFITELYAEQERLVLMKFWKFLNRLITCGSIKELY 636
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251L644 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 402.905 bits (1034), Expect = 8.188e-131
Identity = 233/463 (50.32%), Postives = 293/463 (63.28%), Query Frame = 0
Match: A0A251L644 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 402.905 bits (1034), Expect = 8.188e-131
Identity = 233/463 (50.32%), Postives = 293/463 (63.28%), Query Frame = 0
Query: 152 SPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GYI-PQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDKVESRVQVLSG-------GDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGG--CSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQNG 594
+P P+Q K ESPK + + N E KDGT K+QKQCNCK+SRCLKLYCECFA+G YC+GCNC NC+NNVE+E+ARREAV ATLERNPNAFR KIA SPH +QD+R E GE +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N +A+MQ + A GY P KKRK+Q LF G + +R Q + + SS L + P+ AA+ AT L S YRS LA I +D KELCS LVVVS EA+ L+ ++ A E +Q ETS S+T +L K ++++ DKV S SD D+ R MSPGTL LMCDEQD F+ A SP+ + G CS ++ QG T++YAEQER+VLT F +CLNRL+T G ++ SS ++T Q++ L NG
Sbjct: 79 APPPQQHLPARILKPESPKSKPRPNAELKDGTPKRQKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTQDSRE--ENGEGLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEETQALFHGDHANNIAYMQQATNAALTGAIGSSGYASPPVSKKRKVQELFFGPTAKDPSFHRLGH-LQQVVHIRPSATSSSLSTNPVARAASTAT-LGPSKFTYRSLLADIIQPQDLKELCSVLVVVSGEAAKTLSDQR-NATEQQVQNQTETSLASSTQERLQSQKETDVEKIIADDCSSANQADKVGPYDSSSDGADVPKGRPMSPGTLALMCDEQDTIFMAAASPNRLTGHVCSGTSQLPCG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETKCSSLAKTELGNQKDQLSNG 534
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FI40 ((Tesmin/TSO1-like CXC domain-containing protein {ECO:0000313|EMBL:GFY98360.1}))
HSP 1 Score: 400.593 bits (1028), Expect = 3.204e-130
Identity = 231/448 (51.56%), Postives = 285/448 (63.62%), Query Frame = 0
HSP 2 Score: 41.2022 bits (95), Expect = 6.579e-1
Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = 0
Match: A0A7J0FI40 ((Tesmin/TSO1-like CXC domain-containing protein {ECO:0000313|EMBL:GFY98360.1}))
HSP 1 Score: 400.593 bits (1028), Expect = 3.204e-130
Identity = 231/448 (51.56%), Postives = 285/448 (63.62%), Query Frame = 0
Query: 165 KIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GY-IPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETSSTTSNQLHKDKVESR----VQVLSGGD------KVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVGGCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQN 593
K ESP+ R +++VE KDGT KKQK CNCK+SRCLKLYCECFAAGIYC+GCNC NCHNNVE+E+ARREAV ATLERNPNAFR KI SPH ++DNR E G+ +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+HTN +A++Q + A GY P KKRK Q LF G + +R AQ Y Q + + ++S L SIP AA + S YRS LA I +D KELCS L V SAEA + LA ++ AE D+ E+S +S D++ES+ VQ D + + SD VD+ R MSPGTL LMCDEQD F+ A SP + G + QG T++YAEQER+VLT F +CLNRLVT G ++ SS ++T GQ EP+ N
Sbjct: 87 KPESPRARARASVEVKDGTPKKQKHCNCKHSRCLKLYCECFAAGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIDGSPHGTRDNRE--EPGDALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHTNSVAYIQQAANAAITGAIGSSGYGSPPLSKKRKGQELFFGPTAKDPSIHRLAQ-YQQANHIKASAHSPSLSSIP--AARVNSATTGPSKFTYRSLLADIIQPQDLKELCSVLTVFSAEAGNALADQRDAMERQAE-DRMESSLASSAH---DRLESQKECEVQKAVADDCSSANHAEKISPTSSDGVDLSKARPMSPGTLALMCDEQDTMFMAAASPKGLMGHGRNTSSQLPHGQGMTEVYAEQERVVLTKFRDCLNRLVTLGEIKETTCSSLARTDSGGQSEPISN 525
HSP 2 Score: 41.2022 bits (95), Expect = 6.579e-1
Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = 0
Query: 12 PAKTAARQLDFTAICRASAATAILPDHPQ 40
PAK ARQLDFT ASAA +LPDHPQ
Sbjct: 23 PAKKLARQLDFTGFSSASAAV-VLPDHPQ 50
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4PI77 ((protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:0000313|RefSeq:XP_017643336.1}))
HSP 1 Score: 401.364 bits (1030), Expect = 4.158e-130
Identity = 232/461 (50.33%), Postives = 290/461 (62.91%), Query Frame = 0
Match: A0A6P4PI77 ((protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:0000313|RefSeq:XP_017643336.1}))
HSP 1 Score: 401.364 bits (1030), Expect = 4.158e-130
Identity = 232/461 (50.33%), Postives = 290/461 (62.91%), Query Frame = 0
Query: 153 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 594
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + S + YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F++A S + GCS ++ QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSRE--DAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSMPVSCAATTAAVGMSKFT-YRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKAPSNGLTDHGCSTSSQLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2G4R6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 5.500e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Match: A0A5D2G4R6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 5.500e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Query: 153 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 594
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + +S YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F+++ S + GCS + QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSRE--DAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSVPVSCAATTAA-VGTSKFTYRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKSPSNGLTDHGCSTSSPLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5VAV0 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 5.500e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Match: A0A5J5VAV0 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 5.500e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Query: 153 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 594
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + +S YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F+++ S + GCS + QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSRE--DAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSVPVSCAATTAA-VGTSKFTYRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKSPSNGLTDHGCSTSSPLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AZN6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 6.045e-130
Identity = 239/473 (50.53%), Postives = 302/473 (63.85%), Query Frame = 0
Match: A0A5J5AZN6 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.979 bits (1029), Expect = 6.045e-130
Identity = 239/473 (50.53%), Postives = 302/473 (63.85%), Query Frame = 0
Query: 149 KTESPKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQAF-------GY-IPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDKVESRVQVLSGGD--------KVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSS-SQTVREGQQEPLQNGIKDFKLQ 601
++++P P +V K ESP+ R + N E KDGT KKQKQCNCK+SRCLKLYCECFA+GIYC+GCNC NCHNNVE+E+ARREAV ATLERNPNAFR KIA SPH ++DNR EAGE KHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H++ MA++Q + A GY P KKRK Q LF G + +R AQ + Q + + + SS L SIP+ A A L S YRS LA I +D KELCS LVV S EA+ LA ++ + AE D ETS S+T ++L K ES ++ S D KV T S SD D+ R MSPGTL LMCDEQD + A SP ++G GC+ ++ Q + YAEQER+VLT F +CLN+L+T G ++ SS ++T GQ++P+ NG D + +
Sbjct: 89 QSQAPHP----SVRPVKPESPRARPRQNAEVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNRE--EAGEALVSVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHSS-MAYIQQAANAAITGAIGSSGYGSPPISKKRKGQDLFFGPTSKDPSIHRLAQ-FQQANHIKASAPSS-LSSIPV-ARAGNMAALGPSKFTYRSLLADIIQPQDLKELCSVLVVYSGEAAKTLADRRNATEKQAE-DSMETSLASSTQDRLQSQK-ESDIEKASLDDYSSGNQAEKVGTDESSSDGADVSKGRPMSPGTLALMCDEQDTMLMAAASPKLMGHGCNTSSQLPCG--QVMAEAYAEQERIVLTKFRDCLNKLITLGEIKETKCSSLARTESGGQKDPVSNGTADARTE 547
BLAST of XM_017375456.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2YSF9 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.593 bits (1028), Expect = 6.676e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Match: A0A5D2YSF9 (CRC domain-containing protein {ECO:0000259|PROSITE:PS51634})
HSP 1 Score: 400.593 bits (1028), Expect = 6.676e-130
Identity = 231/461 (50.11%), Postives = 289/461 (62.69%), Query Frame = 0
Query: 153 PKPRQQNTVEFKKIESPKVRQQSNVEFKDGTIKKQKQCNCKNSRCLKLYCECFAAGIYCNGCNCTNCHNNVEHESARREAVGATLERNPNAFRSKIAKSPHRSQDNRTQIEAGEVTTVGKHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCEGSEEARALRQGEHTNVMAFMQHGSTQA---------FGYIPQAIKKRKIQSLFTGEAPANTLDNRSAQKYSQETFLTSLSNSSHLPSIPLHAAAARATMLRSSDSMYRSQLAAIRGLKDAKELCSRLVVVSAEASSKLAGKKLTANENAEIDQCETS--STTSNQLHKDK-------VESRVQVLSGGDKVQTGSSGSDPVDIQHERAMSPGTLELMCDEQDRTFLEAQSPSVVG-GCSKQPKISSSTTQGFTDLYAEQERLVLTNFLNCLNRLVTSGSMQVMHPSSSQTVREGQQEPLQNG 594
P P + K ESPKV+ + E KDGT KKQKQCNCK+SRCLKLYCECFA+G+YC+GCNC NC+NNVE+E+ARR+A+ ATLERNPNAFR KIA SPH ++D+R +AGEV +GKHNKGC+CKKS CLKKYCECFQANI+CSENC+C+DCKN EGSEE +AL G+H N MA++Q + A F IP + KKRK Q LF G +T + S + T + S+ PS+P+ AA A + +S YRS LA I +D KELCS LVV+S EA+ LA + + AE DQ ETS S+T ++L K V + DKV S SD D ER MSPGTL LMCDEQD F+++ S + GCS + QG T++YAEQER+VLT F +CLNRL+T G ++ SS + G Q L NG
Sbjct: 92 PPPLTTASSRVIKPESPKVKPRP-TELKDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCVNCYNNVENEAARRDAIEATLERNPNAFRPKIASSPHGARDSRE--DAGEVLVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAVGSSGFASIPVS-KKRKGQELFFG----STAKDPSVLRLGHFPQATHIRTSAPSPSVPVSCAATTAA-VGTSKFTYRSLLADIIQKQDLKELCSVLVVLSGEAAKTLADQGSLTEKQAE-DQTETSFVSSTQDRLQSQKDFDAEKTVADDCSSANQADKVVPEDSSSDGADTPKERPMSPGTLALMCDEQDTMFMKSPSNGLTDHGCSTSSPLPYG--QGMTEIYAEQERIVLTKFRDCLNRLITFGEIKETQCSSLARIEIGSQRSLSNG 540
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A2I4 | E-Value: 1.180e-161, PID: 56.36 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5A629 | E-Value: 1.568e-153, PID: 56.37 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A4S4DBM7 | E-Value: 8.408e-151, PID: 45.45 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A251L644 | E-Value: 8.188e-131, PID: 50.32 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A7J0FI40 | E-Value: 3.204e-130, PID: 51.56 | (Tesmin/TSO1-like CXC domain-containing protein {E... [more] |
| A0A6P4PI77 | E-Value: 4.158e-130, PID: 50.33 | (protein tesmin/TSO1-like CXC 5 isoform X1 {ECO:00... [more] |
| A0A5D2G4R6 | E-Value: 5.500e-130, PID: 50.11 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5VAV0 | E-Value: 5.500e-130, PID: 50.11 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5J5AZN6 | E-Value: 6.045e-130, PID: 50.53 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A5D2YSF9 | E-Value: 6.676e-130, PID: 50.11 | CRC domain-containing protein {ECO:0000259|PROSITE... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |