Resource Type:
Polypeptide
Name:
XM_017372737.1
Identifier:
XM_017372737.1-protein
Sequence:
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGS
KTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKG
KDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDG
RHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDES
FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM
QGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSG
PPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAF
EQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFI
MITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDE
FEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTK
VARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRI
TAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICG
DAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCR
HNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGG
QKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTD
KGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKS
VEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVA
EIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKR
TRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRAHELESERRRDREKSG
SRERDDGRDKGRERDRDRRRRMK
Sequence Length:
973
Sequence Checksum:
2d139e1e8761460a511ef43658f6c324
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017372737.1, derives from mRNA, XM_017372737.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A524 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51737.1}))
HSP 1 Score: 1499.18 bits (3880), Expect = 0.000e+0
Identity = 803/971 (82.70%), Postives = 874/971 (90.01%), Query Frame = 0
Match: A0A5B7A524 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51737.1}))
HSP 1 Score: 1499.18 bits (3880), Expect = 0.000e+0
Identity = 803/971 (82.70%), Postives = 874/971 (90.01%), Query Frame = 0
Query: 3 SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSR-DKEREN------EGDRDKERHRDRAHELESERRRD----REKSGSRERDD-GRDKG 961
SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSK FVRGGT+NPN+KLKTD+EGGNSKDGVSGSKKGSRYVPSF+PPP+ATKG++++KKKE+E+ K+KEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRH +NS+ SSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V EDDHLRHVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP KSPE EKESG+TYAAGRSRR+E ERTLTD+QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKET IPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSG+ GV+PFHSICGDAPE+EKK + DT D K NQDAALAM KGAA +ELLNLP+ ELERRCRHNGLSL+GGRE MV RLLYLEEAEKQRGYELNDDLKYAQ HSSSGRY+ G+KET EME G S DE+ SQG+ S LAPTIPIPQPEL+AFT+KG+N+P+L SKWAR+DDE DDEQ S RDLGL+YSSSGSENA+D K+ E+++ TDAS+ PD+G+ EEQRQ LRR+EV+L+EYRESLEDRGI + EIE+KV IHRK L+SE+GL+ SNE+ +K+ SS+RR+RRD SRESSRKR S SRS+SPQRKSS D+ERE+ E RD++R RDRA +LESER RD REKSGSRERDD +DKG
Sbjct: 2 SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTLNPNEKLKTDSEGGNSKDGVSGSKKGSRYVPSFIPPPLATKGREYDKKKEEEKSKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGENSAPSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPLEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTVKSPEHEKESGTTYAAGRSRRVELERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETSIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEKKTSSEDTGDGGKINQDAALAMDKGAAMKELLNLPLAELERRCRHNGLSLLGGRELMVVRLLYLEEAEKQRGYELNDDLKYAQNHSSSGRYSSGRKETNVEMEPMGLSGWNHYGEDEMRSQGRWSTPLAPTIPIPQPELKAFTNKGKNDPVLPVSKWAREDDESDDEQKRSPRDLGLSYSSSGSENASDGPGKADEIELETDASIPAQPDSGMNEEQRQKLRRLEVALMEYRESLEDRGISSLDEIERKVTIHRKRLQSEYGLLDSNEDISGNKRSSSERRDRRDNSRESSRKRPHSSSRSKSPQRKSSSIDRERESDMDRDRERHRDRDRDRDRAQDLESERGRDREPGREKSGSRERDDHDKDKG 972
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9P2 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51733.1}))
HSP 1 Score: 1493.79 bits (3866), Expect = 0.000e+0
Identity = 792/963 (82.24%), Postives = 863/963 (89.62%), Query Frame = 0
Match: A0A5B7A9P2 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51733.1}))
HSP 1 Score: 1493.79 bits (3866), Expect = 0.000e+0
Identity = 792/963 (82.24%), Postives = 863/963 (89.62%), Query Frame = 0
Query: 3 SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRA---------HELESERRRDREKSGSRERDD 956
SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSK FVRGGT+NPN+KLKTD+EGGNSKDGVSGSKKGSRYVPSF+PPP+ATKG++++KKKE+E+ K+KEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRH +NS+ SSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V EDDHLRHVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP KSPE EKESG+TYAAGRSRR+E ERTLTD+QRDEFED LRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKET IPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSG+ GV+PFHSICGDAPE+EKK + DT D K NQDAALAMGKGAA +ELLNLP+ ELERRCRHNGLSLVGGRE MV RLLYLEEAEKQRGYEL+DDLKYAQ HSSSGR++ G+KET +ME G S RN DE+ SQGK S L T IPQPEL+AF +KG+ +P+L ASKWAR+DDE DDEQ S R+LGL+YSSSGSENA D K+ E+++ TD+SV D+G+ EEQRQ LRR+EV+LIEYRESLEDRGIK + EIE+KVAIHRK L+SE+GL+ SNE+ +KK S +RR+RRD+S ESSRKR RS SRS+SPQRKSS ++RE++ DRD+ERH DR E +R RDREKSGSRERDD
Sbjct: 2 SFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTLNPNEKLKTDSEGGNSKDGVSGSKKGSRYVPSFIPPPLATKGREYDKKKEEEKSKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGENSAPSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPLEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTVKSPEHEKESGTTYAAGRSRRVELERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETSIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEKKTSSEDTGDGGKINQDAALAMGKGAAMRELLNLPLAELERRCRHNGLSLVGGREMMVQRLLYLEEAEKQRGYELDDDLKYAQSHSSSGRFSSGRKETNVDMEPMGLSGWSRNGEDEMRSQGKESVPLGLTNFIPQPELKAFPNKGKADPVLPASKWAREDDESDDEQKRSPRNLGLSYSSSGSENAGDGPSKAEEMELATDSSVPAPSDSGMNEEQRQKLRRLEVALIEYRESLEDRGIKSLEEIERKVAIHRKRLQSEYGLLDSNEDTG-NKKSSLERRDRRDDSHESSRKRHRSQSRSKSPQRKSS-SRDRESDMDRDRERHHDRDRDRGARDPESERGRDRERDREKSGSRERDD 962
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KUG0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018561:mrna}))
HSP 1 Score: 1492.63 bits (3863), Expect = 0.000e+0
Identity = 780/955 (81.68%), Postives = 857/955 (89.74%), Query Frame = 0
Match: A0A7N2KUG0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018561:mrna}))
HSP 1 Score: 1492.63 bits (3863), Expect = 0.000e+0
Identity = 780/955 (81.68%), Postives = 857/955 (89.74%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSS-RDKEREN--EGDRDKERHRDRAHELESERRRDREKSGS 951
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLY EFVESFQ D+ PGSK+FVRGGTINPNDK+K D+EG SKDGVS KKGSRYVPSFLPPPMA KGK+ EKKKE+E+PKEKEKGKSRNIDHFMEELKHEQEMRERRNQ+REHWRDGR ++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PEDDHL HVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP AKSP+ EKESGSTYAAGRSRR+E ERTLTDSQRDEFEDMLRALTLERSQIKEAMGF+LDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEA+LPDI+ESFNDLYRS++GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSGS GVVPFHSICGDA E+EKK + DT + K NQDAALAMGKGAAT+EL++LPI ELERRCRHNGLSLVGGRE MV+RLL LEEAE+QRGYEL+DDLKYAQ HSSSG+Y+ Q E E E AG S R DE+ +QGKG LAPT+PIPQP+L+AF K +NEP+L ASKWAR+DD+ DDEQ +S R LGL YSSSGSENA D+ K+ E++ T S+ DTG+ EEQRQ LRR+EV+LIEYRESLE+RGIK EIEKKVA RK L+SE+GL+HSNE++ +K+ SS+RR+RRD++R+ SRKR RS S+S SP RKSS RDKERE+ + DR++ R RDR H++ESE+ RDREKSGS
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYQEFVESFQGDTTPGSKSFVRGGTINPNDKVKIDSEGEKSKDGVSVPKKGSRYVPSFLPPPMAAKGKESEKKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWRDGRQNEHSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVVPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTAKSPDHEKESGSTYAAGRSRRMESERTLTDSQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEASLPDIMESFNDLYRSVTGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGSSGVVPFHSICGDALEIEKKTSSEDTGEGGKGNQDAALAMGKGAATKELMSLPIAELERRCRHNGLSLVGGREMMVSRLLSLEEAERQRGYELDDDLKYAQSHSSSGKYSNSQSEMNVEPELAGLSGWNRYGEDEVQAQGKGFIPLAPTLPIPQPDLKAFMKKEKNEPVLPASKWAREDDDSDDEQKSSGRGLGLGYSSSGSENAGDDPSKADEMEFATGTSIPAQTDTGMNEEQRQKLRRLEVALIEYRESLEERGIKSSEEIEKKVATRRKQLQSEYGLLHSNEDSSANKRTSSERRDRRDDTRDPSRKRHRSESQSESPPRKSSNRDKEREHALDRDRERHRDRDRTHDIESEKGRDREKSGS 955
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G7B6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5936527.1}))
HSP 1 Score: 1492.25 bits (3862), Expect = 0.000e+0
Identity = 781/954 (81.87%), Postives = 862/954 (90.36%), Query Frame = 0
Match: A0A7J7G7B6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5936527.1}))
HSP 1 Score: 1492.25 bits (3862), Expect = 0.000e+0
Identity = 781/954 (81.87%), Postives = 862/954 (90.36%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRK-SSRDKERENEGDRDKERHRDRAHELESERRRDREKSGSRE 953
M+SFS+TRKKTPFQKHREEEEAKKKRAEDETARLY EFVESFQ +++PGSK FVRGGTIN ND K D+EGGNSKDGVSGSKKGSRYVPSFLPPP +TKGK++EKKKE+E+PKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDG H++NS+ S+RFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PED HLRHVIDTMAL++LDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP AKSPELEKESGSTYAAGRSRR+E ERTLTD+QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVWADWFLFSDAY+NGLRATFLRSG+ GV+ FHS+CGDAPE+EKK + D SD NQDAALAMGKGAA +ELL+LP+ ELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGY L+DDLKYAQ SSS RY+ G+KET EME G S R DE+ SQG S LA TIP PQPEL+ T+KG+N+P+L ASKWAR+D+ DDEQ S RDLGL+YSSSGSENA D +++ EV+ +AS+ PD+G+ EEQRQ LRR+EV+ +EYRESLE+RG+K++ EIEKKVAIHR+ LE+E+GL+ SN+N +K+ S +RR+R+D SRE RKR RS S S SPQRK SS+D+E+EN+ D+D+ERHRDRAH+ ES R+RDREKSGSRE
Sbjct: 1 MTSFSVTRKKTPFQKHREEEEAKKKRAEDETARLYQEFVESFQGENIPGSKVFVRGGTINVNDVPKIDSEGGNSKDGVSGSKKGSRYVPSFLPPP-STKGKEYEKKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGIHSENSAPSTRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPPEDGHLRHVIDTMALFVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTAKSPELEKESGSTYAAGRSRRLELERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYMNGLRATFLRSGNSGVISFHSVCGDAPEIEKKTSSEDASDG-GINQDAALAMGKGAAMKELLSLPLAELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYALDDDLKYAQSQSSSSRYSSGRKETNVEMEPVGLSGWSRYGEDEMHSQGSVSVPLAQTIPTPQPELKGLTNKGKNDPVLPASKWAREDEGSDDEQKKSPRDLGLSYSSSGSENAGDGPNRADEVEFAAEASIAALPDSGMNEEQRQKLRRLEVASMEYRESLEERGLKNLEEIEKKVAIHRRRLEAEYGLLDSNDNVTANKR-SLERRDRKD-SRECLRKRHRSQSGSESPQRKSSSKDREKENDVDKDRERHRDRAHDSESGRKRDREKSGSRE 950
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RZH4 ((U2 snRNP-associated SURP motif-containing protein {ECO:0000313|EMBL:EXC01118.1}))
HSP 1 Score: 1481.46 bits (3834), Expect = 0.000e+0
Identity = 762/982 (77.60%), Postives = 849/982 (86.46%), Query Frame = 0
Match: W9RZH4 ((U2 snRNP-associated SURP motif-containing protein {ECO:0000313|EMBL:EXC01118.1}))
HSP 1 Score: 1481.46 bits (3834), Expect = 0.000e+0
Identity = 762/982 (77.60%), Postives = 849/982 (86.46%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTE--------------------GGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRES-SRKRTRSHSRSRSPQRKSSRDKERENE----GDRDKERHRDRAHELESERRRDREKSGSRERDD 956
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSKTFVRGG INPNDK KTD E G SKDGVSG KKGSRYVPSF+PPP+A+KGK+ EKK+E+++P+E+EKGKS+NID +MEELKH QEMR+RR+Q+ E+WR+ RH DNS+LS RFDELPD+FDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PEDDHLRHVIDTMA+Y+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP AKSP+LEKESG+TYAAGRSRR+EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFE TLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLR G+ GV PFHSICGDAPE+EK I+ DT DA KTN+DAALAMGKGAA QEL+NLP ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGYEL++DLKYAQ HSSSGRY+GG++ET E E GSS DE+ SQ KGS LA TIPIPQPEL+ F K +++P+L ASKWAR+DD+ DDEQ S+R LGL YSSSGSENA D K+ E++ D+SV V PD+G++EEQR+ LRR+E +LIEYRESLE+RGI+ EIE+KV +HRK LE+E+GL +SN++A SK+ S +RR+RRD S E+ ++ +R ++RD+ERE++ +R +ER RDR H+ E+ER + REKSGSRERDD
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKTFVRGGMINPNDKSKTDNEVLLPGHINKSMDLFIHSRMAGEKSKDGVSGPKKGSRYVPSFIPPPLASKGKEPEKKREEDKPREREKGKSKNIDLYMEELKHAQEMRDRRSQDHENWRE-RHNDNSALS-RFDELPDEFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVVPPEDDHLRHVIDTMAIYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPDLEKESGATYAAGRSRRVEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEGTLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRLGNSGVTPFHSICGDAPEIEKIISFEDTGDAGKTNEDAALAMGKGAAMQELMNLPFAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDEDLKYAQGHSSSGRYSGGRRETNVEGEPMGSSGWNHYAGDEIDSQAKGSVPLAQTIPIPQPELKPFVKKEKSDPVLPASKWAREDDDSDDEQKRSSRGLGLGYSSSGSENAGDGPSKADEMESAADSSV-VQPDSGMSEEQRKKLRRLEAALIEYRESLEERGIRSPEEIERKVTMHRKRLEAEYGLSNSNKDAAGSKRASLERRDRRDNSHETSRKRHRSRSRSDSPTRRSTNRDREREHDLDRDRERHRERDRDRGHDFENERGK-REKSGSRERDD 978
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7BWN1 ((U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:KAF5726281.1}))
HSP 1 Score: 1475.3 bits (3818), Expect = 0.000e+0
Identity = 739/927 (79.72%), Postives = 828/927 (89.32%), Query Frame = 0
Match: A0A7J7BWN1 ((U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:KAF5726281.1}))
HSP 1 Score: 1475.3 bits (3818), Expect = 0.000e+0
Identity = 739/927 (79.72%), Postives = 828/927 (89.32%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSS-RDKERENEGD 925
MSSFSITRKKTPFQKHREEEEAKKKR+EDETARLYAEF+ESFQ DS PGSKTFVRGGTINPNDK K+D+EG SKDG+S KKGSRYVPSF+PPPMATKGK+ +KKKED+RPKEKEKGK+RNID+FMEELKHEQEMRERRNQEREHW DGRH+++S+ SRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+P VDE+FLLRTFGRFGPIASVKIMWPRTEEE+RRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPGHMAIRSKEGATV+LS SGPPVTS+P+QNSELVLTPNVPDI V PED+HLRHVIDTM+LY+LDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PP LP KS E EK SGSTYAAGRSRR+EPERTLTD QRDEFEDMLR+LTLER QI+E MGFALDNADAAGEIVEVL+ESLTLKETPIP+KVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGS GVVPFHSICGDAPE+EKK + D + +K NQD+ALAMGKGAATQEL++LP+ ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGYEL+DDLK++Q HS S R++ G+ + E + AGSS D L SQG+ S LA TIPIPQPEL+ F K +++P+L ASKWARDDDE DDEQ S+R+LGL+YSSSGSENA D K+ +V++ TDAS+ + PD+GI EEQRQ LRR+EV+LIEY ESLE+RG+K + EIE+KVAIHRK L+SE+GL+ SNE+ +K+ SS+R++ D++R+ S+KR RS SRS SP KS+ RD++REN+ D
Sbjct: 19 MSSFSITRKKTPFQKHREEEEAKKKRSEDETARLYAEFLESFQGDSTPGSKTFVRGGTINPNDKFKSDSEGEKSKDGLSVPKKGSRYVPSFIPPPMATKGKESDKKKEDDRPKEKEKGKARNIDNFMEELKHEQEMRERRNQEREHWGDGRHSESSAPPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPTVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVVLSDQSGPPVTSIPNQNSELVLTPNVPDIIVAPPEDEHLRHVIDTMSLYVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPLLPTTKSLEHEKVSGSTYAAGRSRRVEPERTLTDPQRDEFEDMLRSLTLERRQIRETMGFALDNADAAGEIVEVLSESLTLKETPIPSKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYISITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSSGVVPFHSICGDAPEVEKKTSSEDPREGVKINQDSALAMGKGAATQELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDDLKFSQNHSGSSRHSSGRSQFSVEQDLAGSSGWNHYGEDGLQSQGQVSVPLATTIPIPQPELKPFAKKEKSDPLLPASKWARDDDESDDEQKRSSRELGLSYSSSGSENAGDGAGKADDVELATDASIPLQPDSGINEEQRQKLRRLEVALIEYHESLEERGVKSLEEIERKVAIHRKRLQSEYGLLDSNEDITGNKRTSSERKDWLDDARD-SKKRNRSQSRSESPSLKSTNRDRDRENDPD 944
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H346 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46875.1}))
HSP 1 Score: 1474.92 bits (3817), Expect = 0.000e+0
Identity = 773/962 (80.35%), Postives = 854/962 (88.77%), Query Frame = 0
Match: F6H346 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46875.1}))
HSP 1 Score: 1474.92 bits (3817), Expect = 0.000e+0
Identity = 773/962 (80.35%), Postives = 854/962 (88.77%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTG-ITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRAHELESE----RRRDREKSGSRERDD 956
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ D+ PGSKTFVRGGTINPN+++KT++EG SKDGVS KKGSRYVPSF+PPP+A KGK+ +KKKE+E+PKE+EKGKSRNIDHFMEELKHEQEMRERRNQER+ WRDGRH D+S+L SRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVP+QNSELVLTPNVPDI V+ PEDDHL HVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP +SPE EKESG+T+AAGRSRR+E ERTLTD QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRS++GRITAEALKERV+KVLQVWADWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE+EKK + DT + K+NQDAALAMGKGAA +ELL+LPI ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGY+L+DDLKYAQ HS+SGRY +KE E ES G S R DE+ SQGKGS LAPTIPIPQPEL+AFT+KG+ +P+L ASKWAR+DD+ DDEQ S R LGL+YSSSGSENA D K+ E++ T++S+ PD+G + EE RQ LRR+EV+LIEYRESLE+RGIK EIE+KVAIHRK L+SE+GL SNE+ +K+ S++RR+RRD+SRE++RKR RS S+S D D+ERHRDR+H+ ESE R RDREKSGSRER+D
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERVKTESEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQERDQWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVSPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTVRSPEHEKESGTTFAAGRSRRVELERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEKKTSSEDTGEGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYPSSRKEIGVETESVGLSGWNRYGEDEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDSRETTRKRHRSRSQSE----------------DGDRERHRDRSHDPESEKGRDRERDREKSGSRERED 946
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FVD7 ((Uncharacterized protein {ECO:0000313|EMBL:KDO67407.1}))
HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 758/925 (81.95%), Postives = 818/925 (88.43%), Query Frame = 0
Match: A0A067FVD7 ((Uncharacterized protein {ECO:0000313|EMBL:KDO67407.1}))
HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 758/925 (81.95%), Postives = 818/925 (88.43%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRS-PQRKSS-RDKEREN 922
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSK FVRGGTI+PNDKLK + EG SKDGVS KKGSRYVPSF+PPP+A KGKD E+KKE+ERP+EK++GKSRNID+FMEELKHEQEMRERRNQEREHWRDGRHT++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVT+VPSQNSELVLTPNVPDI V PED HLRHVIDT+ALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP +KSPE EKESG+TYAAGRSRR EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE++KK N DT D KTNQD ALAMGKGAA +EL+NLP+ ELERRCRHNGLSLVGGRE MVARLL LE+AEKQRGYEL+DDLK A SSSGRY+ G KET E ES G S DE SQ GS L + PQPE++AFT K +N+P+L ASKWA +DDE DDEQ S+R LGL+YSSSGSENA D K+ +VD T DAS+ V PD+G+ EEQRQ LRR+EVSLIEYRESLE+RGIK EIEKKVAIHRK LESE+GL NE+ +K RR+RRDE + SRKR RS S+S S P RKSS RD+ERE+
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLK-EAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK-----RRDRRDEILD-SRKRHRSQSQSESPPPRKSSIRDRERES 918
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UBT1 ((Uncharacterized protein {ECO:0000313|EMBL:ESR63502.1}))
HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 758/925 (81.95%), Postives = 818/925 (88.43%), Query Frame = 0
Match: V4UBT1 ((Uncharacterized protein {ECO:0000313|EMBL:ESR63502.1}))
HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 758/925 (81.95%), Postives = 818/925 (88.43%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRS-PQRKSS-RDKEREN 922
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSK FVRGGTI+PNDKLK + EG SKDGVS KKGSRYVPSF+PPP+A KGKD E+KKE+ERP+EK++GKSRNID+FMEELKHEQEMRERRNQEREHWRDGRHT++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVT+VPSQNSELVLTPNVPDI V PED HLRHVIDT+ALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP +KSPE EKESG+TYAAGRSRR EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE++KK N DT D KTNQD ALAMGKGAA +EL+NLP+ ELERRCRHNGLSLVGGRE MVARLL LE+AEKQRGYEL+DDLK A SSSGRY+ G KET E ES G S DE SQ GS L + PQPE++AFT K +N+P+L ASKWA +DDE DDEQ S+R LGL+YSSSGSENA D K+ +VD T DAS+ V PD+G+ EEQRQ LRR+EVSLIEYRESLE+RGIK EIEKKVAIHRK LESE+GL NE+ +K RR+RRDE + SRKR RS S+S S P RKSS RD+ERE+
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLK-EAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK-----RRDRRDEILD-SRKRHRSQSQSESPPPRKSSIRDRERES 918
BLAST of XM_017372737.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5NX15 ((Uncharacterized protein {ECO:0000313|EMBL:GAY44365.1}))
HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0
Identity = 758/931 (81.42%), Postives = 818/931 (87.86%), Query Frame = 0
Match: A0A2H5NX15 ((Uncharacterized protein {ECO:0000313|EMBL:GAY44365.1}))
HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0
Identity = 758/931 (81.42%), Postives = 818/931 (87.86%), Query Frame = 0
Query: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQDDSVPGSKTFVRGGTINPNDKLKTDTEGGNSKDGVSGSKKGSRYVPSFLPPPMATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ------GVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRS-PQRKSS-RDKEREN 922
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQ DS PGSK FVRGGTI+PNDKLK + EG SKDGVS KKGSRYVPSF+PPP+A KGKD E+KKE+ERP+EK++GKSRNID+FMEELKHEQEMRERRNQEREHWRDGRHT++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ GV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVT+VPSQNSELVLTPNVPDI V PED HLRHVIDT+ALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP +KSPE EKESG+TYAAGRSRR EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE++KK N DT D KTNQD ALAMGKGAA +EL+NLP+ ELERRCRHNGLSLVGGRE MVARLL LE+AEKQRGYEL+DDLK A SSSGRY+ G KET E ES G S DE SQ GS L + PQPE++AFT K +N+P+L ASKWA +DDE DDEQ S+R LGL+YSSSGSENA D K+ +VD T DAS+ V PD+G+ EEQRQ LRR+EVSLIEYRESLE+RGIK EIEKKVAIHRK LESE+GL NE+ +K RR+RRDE + SRKR RS S+S S P RKSS RD+ERE+
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGGTIDPNDKLK-EAEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQDLFYVTGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK-----RRDRRDEILD-SRKRHRSQSQSESPPPRKSSIRDRERES 924
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A524 | E-Value: 0.000e+0, PID: 82.70 | (Putative U2 snRNP-associated SURP motif-containin... [more] |
| A0A5B7A9P2 | E-Value: 0.000e+0, PID: 82.24 | (Putative U2 snRNP-associated SURP motif-containin... [more] |
| A0A7N2KUG0 | E-Value: 0.000e+0, PID: 81.68 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| A0A7J7G7B6 | E-Value: 0.000e+0, PID: 81.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5936... [more] |
| W9RZH4 | E-Value: 0.000e+0, PID: 77.60 | (U2 snRNP-associated SURP motif-containing protein... [more] |
| A0A7J7BWN1 | E-Value: 0.000e+0, PID: 79.72 | (U2 snRNP-associated SURP motif-containing protein... [more] |
| F6H346 | E-Value: 0.000e+0, PID: 80.35 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4687... [more] |
| A0A067FVD7 | E-Value: 0.000e+0, PID: 81.95 | (Uncharacterized protein {ECO:0000313|EMBL:KDO6740... [more] |
| V4UBT1 | E-Value: 0.000e+0, PID: 81.95 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6350... [more] |
| A0A2H5NX15 | E-Value: 0.000e+0, PID: 81.42 | (Uncharacterized protein {ECO:0000313|EMBL:GAY4436... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |