Resource Type:
Polypeptide
Name:
XM_017372744.1
Identifier:
XM_017372744.1-protein
Sequence:
MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQERE
HWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAP
QVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA
AKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVIL
SGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILD
GGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWR
TEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTD
SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKET
PIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRS
ISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPF
HSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGEL
ERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSG
RYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPEL
RAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENAND
EIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRG
IKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRE
SSRKRTRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRAHELESERRRD
REKSGSRERDDGRDKGRERDRDRRRRMK
Sequence Length:
878
Sequence Checksum:
568913d2085afe5c23c2ba46675372c1
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017372744.1, derives from mRNA, XM_017372744.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G7B6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5936527.1}))
HSP 1 Score: 1334.7 bits (3453), Expect = 0.000e+0
Identity = 681/835 (81.56%), Postives = 751/835 (89.94%), Query Frame = 0
Match: A0A7J7G7B6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5936527.1}))
HSP 1 Score: 1334.7 bits (3453), Expect = 0.000e+0
Identity = 681/835 (81.56%), Postives = 751/835 (89.94%), Query Frame = 0
Query: 25 SRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRK-SSRDKERENEGDRDKERHRDRAHELESERRRDREKSGSRE 858
SRNIDHFMEELKHEQEMRERRNQEREHWRDG H++NS+ S+RFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PED HLRHVIDTMAL++LDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP AKSPELEKESGSTYAAGRSRR+E ERTLTD+QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVWADWFLFSDAY+NGLRATFLRSG+ GV+ FHS+CGDAPE+EKK + D SD NQDAALAMGKGAA +ELL+LP+ ELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGY L+DDLKYAQ SSS RY+ G+KET EME G S R DE+ SQG S LA TIP PQPEL+ T+KG+N+P+L ASKWAR+D+ DDEQ S RDLGL+YSSSGSENA D +++ EV+ +AS+ PD+G+ EEQRQ LRR+EV+ +EYRESLE+RG+K++ EIEKKVAIHR+ LE+E+GL+ SN+N +K+ S +RR+R+D SRE RKR RS S S SPQRK SS+D+E+EN+ D+D+ERHRDRAH+ ES R+RDREKSGSRE
Sbjct: 119 SRNIDHFMEELKHEQEMRERRNQEREHWRDGIHSENSAPSTRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPPEDGHLRHVIDTMALFVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTAKSPELEKESGSTYAAGRSRRLELERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYMNGLRATFLRSGNSGVISFHSVCGDAPEIEKKTSSEDASDG-GINQDAALAMGKGAAMKELLSLPLAELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYALDDDLKYAQSQSSSSRYSSGRKETNVEMEPVGLSGWSRYGEDEMHSQGSVSVPLAQTIPTPQPELKGLTNKGKNDPVLPASKWAREDEGSDDEQKKSPRDLGLSYSSSGSENAGDGPNRADEVEFAAEASIAALPDSGMNEEQRQKLRRLEVASMEYRESLEERGLKNLEEIEKKVAIHRRRLEAEYGLLDSNDNVTANKR-SLERRDRKD-SRECLRKRHRSQSGSESPQRKSSSKDREKENDVDKDRERHRDRAHDSESGRKRDREKSGSRE 950
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2KUG0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018561:mrna}))
HSP 1 Score: 1329.31 bits (3439), Expect = 0.000e+0
Identity = 677/835 (81.08%), Postives = 747/835 (89.46%), Query Frame = 0
Match: A0A7N2KUG0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p018561:mrna}))
HSP 1 Score: 1329.31 bits (3439), Expect = 0.000e+0
Identity = 677/835 (81.08%), Postives = 747/835 (89.46%), Query Frame = 0
Query: 26 RNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSS-RDKEREN--EGDRDKERHRDRAHELESERRRDREKSGS 856
RNIDHFMEELKHEQEMRERRNQ+REHWRDGR ++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PEDDHL HVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP AKSP+ EKESGSTYAAGRSRR+E ERTLTDSQRDEFEDMLRALTLERSQIKEAMGF+LDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEA+LPDI+ESFNDLYRS++GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSGS GVVPFHSICGDA E+EKK + DT + K NQDAALAMGKGAAT+EL++LPI ELERRCRHNGLSLVGGRE MV+RLL LEEAE+QRGYEL+DDLKYAQ HSSSG+Y+ Q E E E AG S R DE+ +QGKG LAPT+PIPQP+L+AF K +NEP+L ASKWAR+DD+ DDEQ +S R LGL YSSSGSENA D+ K+ E++ T S+ DTG+ EEQRQ LRR+EV+LIEYRESLE+RGIK EIEKKVA RK L+SE+GL+HSNE++ +K+ SS+RR+RRD++R+ SRKR RS S+S SP RKSS RDKERE+ + DR++ R RDR H++ESE+ RDREKSGS
Sbjct: 121 RNIDHFMEELKHEQEMRERRNQDREHWRDGRQNEHSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVVPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTAKSPDHEKESGSTYAAGRSRRMESERTLTDSQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEASLPDIMESFNDLYRSVTGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGSSGVVPFHSICGDALEIEKKTSSEDTGEGGKGNQDAALAMGKGAATKELMSLPIAELERRCRHNGLSLVGGREMMVSRLLSLEEAERQRGYELDDDLKYAQSHSSSGKYSNSQSEMNVEPELAGLSGWNRYGEDEVQAQGKGFIPLAPTLPIPQPDLKAFMKKEKNEPVLPASKWAREDDDSDDEQKSSGRGLGLGYSSSGSENAGDDPSKADEMEFATGTSIPAQTDTGMNEEQRQKLRRLEVALIEYRESLEERGIKSSEEIEKKVATRRKQLQSEYGLLHSNEDSSANKRTSSERRDRRDDTRDPSRKRHRSESQSESPPRKSSNRDKEREHALDRDRERHRDRDRTHDIESEKGRDREKSGS 955
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9RZH4 ((U2 snRNP-associated SURP motif-containing protein {ECO:0000313|EMBL:EXC01118.1}))
HSP 1 Score: 1321.99 bits (3420), Expect = 0.000e+0
Identity = 676/867 (77.97%), Postives = 762/867 (87.89%), Query Frame = 0
Match: W9RZH4 ((U2 snRNP-associated SURP motif-containing protein {ECO:0000313|EMBL:EXC01118.1}))
HSP 1 Score: 1321.99 bits (3420), Expect = 0.000e+0
Identity = 676/867 (77.97%), Postives = 762/867 (87.89%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRES-SRKRTRSHSRSRSPQRKSSRDKERENE----GDRDKERHRDRAHELESERRRDREKSGSRERDD 861
+A+KGK+ EKK+E+++P+E+EKGKS+NID +MEELKH QEMR+RR+Q+ E+WR+ RH DNS+LS RFDELPD+FDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PEDDHLRHVIDTMA+Y+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP AKSP+LEKESG+TYAAGRSRR+EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFE TLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLR G+ GV PFHSICGDAPE+EK I+ DT DA KTN+DAALAMGKGAA QEL+NLP ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGYEL++DLKYAQ HSSSGRY+GG++ET E E GSS DE+ SQ KGS LA TIPIPQPEL+ F K +++P+L ASKWAR+DD+ DDEQ S+R LGL YSSSGSENA D K+ E++ D+SV V PD+G++EEQR+ LRR+E +LIEYRESLE+RGI+ EIE+KV +HRK LE+E+GL +SN++A SK+ S +RR+RRD S E+ ++ +R ++RD+ERE++ +R +ER RDR H+ E+ER + REKSGSRERDD
Sbjct: 116 LASKGKEPEKKREEDKPREREKGKSKNIDLYMEELKHAQEMRDRRSQDHENWRE-RHNDNSALS-RFDELPDEFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVVPPEDDHLRHVIDTMAIYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPDLEKESGATYAAGRSRRVEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEGTLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRLGNSGVTPFHSICGDAPEIEKIISFEDTGDAGKTNEDAALAMGKGAAMQELMNLPFAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDEDLKYAQGHSSSGRYSGGRRETNVEGEPMGSSGWNHYAGDEIDSQAKGSVPLAQTIPIPQPELKPFVKKEKSDPVLPASKWAREDDDSDDEQKRSSRGLGLGYSSSGSENAGDGPSKADEMESAADSSV-VQPDSGMSEEQRKKLRRLEAALIEYRESLEERGIRSPEEIERKVTMHRKRLEAEYGLSNSNKDAAGSKRASLERRDRRDNSHETSRKRHRSRSRSDSPTRRSTNRDREREHDLDRDRERHRERDRDRGHDFENERGK-REKSGSRERDD 978
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A524 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51737.1}))
HSP 1 Score: 1320.84 bits (3417), Expect = 0.000e+0
Identity = 717/878 (81.66%), Postives = 784/878 (89.29%), Query Frame = 0
Match: A0A5B7A524 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51737.1}))
HSP 1 Score: 1320.84 bits (3417), Expect = 0.000e+0
Identity = 717/878 (81.66%), Postives = 784/878 (89.29%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSR-DKEREN------EGDRDKERHRDRAHELESERRRD----REKSGSRERDD-GRDKG 866
+ATKG++++KKKE+E+ K+KEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRH +NS+ SSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V EDDHLRHVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP KSPE EKESG+TYAAGRSRR+E ERTLTD+QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKET IPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSG+ GV+PFHSICGDAPE+EKK + DT D K NQDAALAM KGAA +ELLNLP+ ELERRCRHNGLSL+GGRE MV RLLYLEEAEKQRGYELNDDLKYAQ HSSSGRY+ G+KET EME G S DE+ SQG+ S LAPTIPIPQPEL+AFT+KG+N+P+L SKWAR+DDE DDEQ S RDLGL+YSSSGSENA+D K+ E+++ TDAS+ PD+G+ EEQRQ LRR+EV+L+EYRESLEDRGI + EIE+KV IHRK L+SE+GL+ SNE+ +K+ SS+RR+RRD SRESSRKR S SRS+SPQRKSS D+ERE+ E RD++R RDRA +LESER RD REKSGSRERDD +DKG
Sbjct: 95 LATKGREYDKKKEEEKSKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGENSAPSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPLEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTVKSPEHEKESGTTYAAGRSRRVELERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETSIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEKKTSSEDTGDGGKINQDAALAMDKGAAMKELLNLPLAELERRCRHNGLSLLGGRELMVVRLLYLEEAEKQRGYELNDDLKYAQNHSSSGRYSSGRKETNVEMEPMGLSGWNHYGEDEMRSQGRWSTPLAPTIPIPQPELKAFTNKGKNDPVLPVSKWAREDDESDDEQKRSPRDLGLSYSSSGSENASDGPGKADEIELETDASIPAQPDSGMNEEQRQKLRRLEVALMEYRESLEDRGISSLDEIERKVTIHRKRLQSEYGLLDSNEDISGNKRSSSERRDRRDNSRESSRKRPHSSSRSKSPQRKSSSIDRERESDMDRDRERHRDRDRDRDRAQDLESERGRDREPGREKSGSRERDDHDKDKG 972
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EZ67 ((Uncharacterized protein {ECO:0000313|EMBL:THG22389.1}))
HSP 1 Score: 1316.21 bits (3405), Expect = 0.000e+0
Identity = 681/863 (78.91%), Postives = 751/863 (87.02%), Query Frame = 0
Match: A0A4S4EZ67 ((Uncharacterized protein {ECO:0000313|EMBL:THG22389.1}))
HSP 1 Score: 1316.21 bits (3405), Expect = 0.000e+0
Identity = 681/863 (78.91%), Postives = 751/863 (87.02%), Query Frame = 0
Query: 25 SRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ----------------------------GVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRK-SSRDKERENEGDRDKERHRDRAHELESERRRDREKSGSRE 858
SRNIDHFMEELKHEQEMRERRNQEREHWRDG H++NS+ S+RFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ GV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V PED HLRHVIDTMAL++LDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP AKSPELEKESGSTYAAGRSRR+E ERTLTD+QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVWADWFLFSDAY+NGLRATFLRSG+ GV+ FHS+CGDAPE+EKK + D SD NQDAALAMGKGAA +ELL+LP+ ELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGY L+DDLKYAQ SSS RY+ G+KET EME G S R DE+ SQG S LA TIP PQPEL+ T+KG+N+P+L ASKWAR+D+ DDEQ S RDLGL+YSSSGSENA D +++ EV+ +AS+ PD+G+ EEQRQ LRR+EV+ +EYRESLE+RG+K++ EIEKKVAIHR+ LE+E+GL+ SN+N +K+ S +RR+R+D SRE RKR RS S S SPQRK SS+D+E+EN+ D+D+ERHRDRAH+ ES R+RDREKSGSRE
Sbjct: 154 SRNIDHFMEELKHEQEMRERRNQEREHWRDGIHSENSAPSTRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGLVFGDFISIMNLWMQWDKGTEDNFCVPGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPPEDGHLRHVIDTMALFVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTAKSPELEKESGSTYAAGRSRRLELERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYMNGLRATFLRSGNSGVISFHSVCGDAPEIEKKTSSEDASDG-GINQDAALAMGKGAAMKELLSLPLAELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYALDDDLKYAQSQSSSSRYSSGRKETNVEMEPVGLSGWSRYGEDEMHSQGSVSVPLAQTIPTPQPELKGLTNKGKNDPVLPASKWAREDEGSDDEQKKSPRDLGLSYSSSGSENAGDGPNRADEVEFAAEASIAALPDSGMNEEQRQKLRRLEVASMEYRESLEERGLKNLEEIEKKVAIHRRRLEAEYGLLDSNDNVTANKR-SLERRDRKD-SRECLRKRHRSQSGSESPQRKSSSKDREKENDVDKDRERHRDRAHDSESGRKRDREKSGSRE 1013
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A9P2 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51733.1}))
HSP 1 Score: 1315.44 bits (3403), Expect = 0.000e+0
Identity = 706/870 (81.15%), Postives = 773/870 (88.85%), Query Frame = 0
Match: A0A5B7A9P2 ((Putative U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:MPA51733.1}))
HSP 1 Score: 1315.44 bits (3403), Expect = 0.000e+0
Identity = 706/870 (81.15%), Postives = 773/870 (88.85%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRA---------HELESERRRDREKSGSRERDD 861
+ATKG++++KKKE+E+ K+KEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRH +NS+ SSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEG+TVILSGPSGPPVTSVPSQNSELVLTPNVPDI V EDDHLRHVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP KSPE EKESG+TYAAGRSRR+E ERTLTD+QRDEFED LRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKET IPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSG+ GV+PFHSICGDAPE+EKK + DT D K NQDAALAMGKGAA +ELLNLP+ ELERRCRHNGLSLVGGRE MV RLLYLEEAEKQRGYEL+DDLKYAQ HSSSGR++ G+KET +ME G S RN DE+ SQGK S L T IPQPEL+AF +KG+ +P+L ASKWAR+DDE DDEQ S R+LGL+YSSSGSENA D K+ E+++ TD+SV D+G+ EEQRQ LRR+EV+LIEYRESLEDRGIK + EIE+KVAIHRK L+SE+GL+ SNE+ +KK S +RR+RRD+S ESSRKR RS SRS+SPQRKSS ++RE++ DRD+ERH DR E +R RDREKSGSRERDD
Sbjct: 95 LATKGREYDKKKEEEKSKDKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGENSAPSSRFDELPDDFDPSGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDITVVPLEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTVKSPEHEKESGTTYAAGRSRRVELERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETSIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEKKTSSEDTGDGGKINQDAALAMGKGAAMRELLNLPLAELERRCRHNGLSLVGGREMMVQRLLYLEEAEKQRGYELDDDLKYAQSHSSSGRFSSGRKETNVDMEPMGLSGWSRNGEDEMRSQGKESVPLGLTNFIPQPELKAFPNKGKADPVLPASKWAREDDESDDEQKRSPRNLGLSYSSSGSENAGDGPSKAEEMELATDSSVPAPSDSGMNEEQRQKLRRLEVALIEYRESLEDRGIKSLEEIERKVAIHRKRLQSEYGLLDSNEDTG-NKKSSLERRDRRDDSHESSRKRHRSQSRSKSPQRKSS-SRDRESDMDRDRERHHDRDRDRGARDPESERGRDRERDREKSGSRERDD 962
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H346 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46875.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/843 (80.07%), Postives = 743/843 (88.14%), Query Frame = 0
Match: F6H346 ((Uncharacterized protein {ECO:0000313|EMBL:CCB46875.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/843 (80.07%), Postives = 743/843 (88.14%), Query Frame = 0
Query: 25 SRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTG-ITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSSRDKERENEGDRDKERHRDRAHELESE----RRRDREKSGSRERDD 861
SRNIDHFMEELKHEQEMRERRNQER+ WRDGRH D+S+L SRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVP+QNSELVLTPNVPDI V+ PEDDHL HVIDTMALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PPPLP +SPE EKESG+T+AAGRSRR+E ERTLTD QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRS++GRITAEALKERV+KVLQVWADWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE+EKK + DT + K+NQDAALAMGKGAA +ELL+LPI ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGY+L+DDLKYAQ HS+SGRY +KE E ES G S R DE+ SQGKGS LAPTIPIPQPEL+AFT+KG+ +P+L ASKWAR+DD+ DDEQ S R LGL+YSSSGSENA D K+ E++ T++S+ PD+G + EE RQ LRR+EV+LIEYRESLE+RGIK EIE+KVAIHRK L+SE+GL SNE+ +K+ S++RR+RRD+SRE++RKR RS S+S D D+ERHRDR+H+ ESE R RDREKSGSRER+D
Sbjct: 120 SRNIDHFMEELKHEQEMRERRNQERDQWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVSPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTVRSPEHEKESGTTFAAGRSRRVELERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIEKKTSSEDTGEGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYPSSRKEIGVETESVGLSGWNRYGEDEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYRESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDSRETTRKRHRSRSQSE----------------DGDRERHRDRSHDPESEKGRDRERDREKSGSRERED 946
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067FVD7 ((Uncharacterized protein {ECO:0000313|EMBL:KDO67407.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/830 (81.33%), Postives = 732/830 (88.19%), Query Frame = 0
Match: A0A067FVD7 ((Uncharacterized protein {ECO:0000313|EMBL:KDO67407.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/830 (81.33%), Postives = 732/830 (88.19%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRS-PQRKSS-RDKEREN 827
+A KGKD E+KKE+ERP+EK++GKSRNID+FMEELKHEQEMRERRNQEREHWRDGRHT++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVT+VPSQNSELVLTPNVPDI V PED HLRHVIDT+ALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP +KSPE EKESG+TYAAGRSRR EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE++KK N DT D KTNQD ALAMGKGAA +EL+NLP+ ELERRCRHNGLSLVGGRE MVARLL LE+AEKQRGYEL+DDLK A SSSGRY+ G KET E ES G S DE SQ GS L + PQPE++AFT K +N+P+L ASKWA +DDE DDEQ S+R LGL+YSSSGSENA D K+ +VD T DAS+ V PD+G+ EEQRQ LRR+EVSLIEYRESLE+RGIK EIEKKVAIHRK LESE+GL NE+ +K RR+RRDE + SRKR RS S+S S P RKSS RD+ERE+
Sbjct: 95 LAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK-----RRDRRDEILD-SRKRHRSQSQSESPPPRKSSIRDRERES 918
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UBT1 ((Uncharacterized protein {ECO:0000313|EMBL:ESR63502.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/830 (81.33%), Postives = 732/830 (88.19%), Query Frame = 0
Match: V4UBT1 ((Uncharacterized protein {ECO:0000313|EMBL:ESR63502.1}))
HSP 1 Score: 1311.98 bits (3394), Expect = 0.000e+0
Identity = 675/830 (81.33%), Postives = 732/830 (88.19%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRS-PQRKSS-RDKEREN 827
+A KGKD E+KKE+ERP+EK++GKSRNID+FMEELKHEQEMRERRNQEREHWRDGRHT++S+ SSRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+PQVDE+FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPG MAIRSKEGATVILSGPSGPPVT+VPSQNSELVLTPNVPDI V PED HLRHVIDT+ALY+LDGGCAFEQAIMERGRGNPLF+FLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP LP +KSPE EKESG+TYAAGRSRR EPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSD+LHNSSAPVKNASAYRTKFEATLPDI+ESFNDLYRSI+GRITAEALKERVLKVLQVW+DWFLFSDAYVNGLRATFLRSG+ GV PFHSICGDAPE++KK N DT D KTNQD ALAMGKGAA +EL+NLP+ ELERRCRHNGLSLVGGRE MVARLL LE+AEKQRGYEL+DDLK A SSSGRY+ G KET E ES G S DE SQ GS L + PQPE++AFT K +N+P+L ASKWA +DDE DDEQ S+R LGL+YSSSGSENA D K+ +VD T DAS+ V PD+G+ EEQRQ LRR+EVSLIEYRESLE+RGIK EIEKKVAIHRK LESE+GL NE+ +K RR+RRDE + SRKR RS S+S S P RKSS RD+ERE+
Sbjct: 95 LAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK-----RRDRRDEILD-SRKRHRSQSQSESPPPRKSSIRDRERES 918
BLAST of XM_017372744.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7BWN1 ((U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:KAF5726281.1}))
HSP 1 Score: 1307.35 bits (3382), Expect = 0.000e+0
Identity = 657/832 (78.97%), Postives = 740/832 (88.94%), Query Frame = 0
Match: A0A7J7BWN1 ((U2 snRNP-associated SURP motif-containing protein isoform X1 {ECO:0000313|EMBL:KAF5726281.1}))
HSP 1 Score: 1307.35 bits (3382), Expect = 0.000e+0
Identity = 657/832 (78.97%), Postives = 740/832 (88.94%), Query Frame = 0
Query: 1 MATKGKDFEKKKEDERPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHTDNSSLSSRFDELPDDFDPSGK-PGSFDDGDPQTTNLYVGNLAPQVDESFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPSQNSELVLTPNVPDIKVTLPEDDHLRHVIDTMALYILDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPELEKESGSTYAAGRSRRIEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIVESFNDLYRSISGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSGGVVPFHSICGDAPELEKKINPGDTSDAIKTNQDAALAMGKGAATQELLNLPIGELERRCRHNGLSLVGGRETMVARLLYLEEAEKQRGYELNDDLKYAQIHSSSGRYAGGQKETITEMESAGSSALIRNRVDELPSQGKGSGILAPTIPIPQPELRAFTDKGRNEPMLTASKWARDDDERDDEQNTSTRDLGLTYSSSGSENANDEIHKSVEVDMTTDASVLVHPDTGITEEQRQILRRIEVSLIEYRESLEDRGIKDVAEIEKKVAIHRKHLESEFGLVHSNENAPISKKPSSDRRERRDESRESSRKRTRSHSRSRSPQRKSS-RDKERENEGD 830
MATKGK+ +KKKED+RPKEKEKGK+RNID+FMEELKHEQEMRERRNQEREHW DGRH+++S+ SRFDELPDDFDPSGK PGSFDDGDPQTTNLYVGNL+P VDE+FLLRTFGRFGPIASVKIMWPRTEEE+RRQRNCGFVAFMNRADGQAAKDEMQGV+VYEYELKIGWGKSV+LPSQALPAPPPGHMAIRSKEGATV+LS SGPPVTS+P+QNSELVLTPNVPDI V PED+HLRHVIDTM+LY+LDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRW+PP LP KS E EK SGSTYAAGRSRR+EPERTLTD QRDEFEDMLR+LTLER QI+E MGFALDNADAAGEIVEVL+ESLTLKETPIP+KVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDI+ESFNDLY SI+GRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGS GVVPFHSICGDAPE+EKK + D + +K NQD+ALAMGKGAATQEL++LP+ ELERRCRHNGLSLVGGRE MVARLL LEEAEKQRGYEL+DDLK++Q HS S R++ G+ + E + AGSS D L SQG+ S LA TIPIPQPEL+ F K +++P+L ASKWARDDDE DDEQ S+R+LGL+YSSSGSENA D K+ +V++ TDAS+ + PD+GI EEQRQ LRR+EV+LIEY ESLE+RG+K + EIE+KVAIHRK L+SE+GL+ SNE+ +K+ SS+R++ D++R+ S+KR RS SRS SP KS+ RD++REN+ D
Sbjct: 114 MATKGKESDKKKEDDRPKEKEKGKARNIDNFMEELKHEQEMRERRNQEREHWGDGRHSESSAPPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPTVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVVLSDQSGPPVTSIPNQNSELVLTPNVPDIIVAPPEDEHLRHVIDTMSLYVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPLLPTTKSLEHEKVSGSTYAAGRSRRVEPERTLTDPQRDEFEDMLRSLTLERRQIRETMGFALDNADAAGEIVEVLSESLTLKETPIPSKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYISITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGSSGVVPFHSICGDAPEVEKKTSSEDPREGVKINQDSALAMGKGAATQELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDDLKFSQNHSGSSRHSSGRSQFSVEQDLAGSSGWNHYGEDGLQSQGQVSVPLATTIPIPQPELKPFAKKEKSDPLLPASKWARDDDESDDEQKRSSRELGLSYSSSGSENAGDGAGKADDVELATDASIPLQPDSGINEEQRQKLRRLEVALIEYHESLEERGVKSLEEIERKVAIHRKRLQSEYGLLDSNEDITGNKRTSSERKDWLDDARD-SKKRNRSQSRSESPSLKSTNRDRDRENDPD 944
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7G7B6 | E-Value: 0.000e+0, PID: 81.56 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5936... [more] |
| A0A7N2KUG0 | E-Value: 0.000e+0, PID: 81.08 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| W9RZH4 | E-Value: 0.000e+0, PID: 77.97 | (U2 snRNP-associated SURP motif-containing protein... [more] |
| A0A5B7A524 | E-Value: 0.000e+0, PID: 81.66 | (Putative U2 snRNP-associated SURP motif-containin... [more] |
| A0A4S4EZ67 | E-Value: 0.000e+0, PID: 78.91 | (Uncharacterized protein {ECO:0000313|EMBL:THG2238... [more] |
| A0A5B7A9P2 | E-Value: 0.000e+0, PID: 81.15 | (Putative U2 snRNP-associated SURP motif-containin... [more] |
| F6H346 | E-Value: 0.000e+0, PID: 80.07 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4687... [more] |
| A0A067FVD7 | E-Value: 0.000e+0, PID: 81.33 | (Uncharacterized protein {ECO:0000313|EMBL:KDO6740... [more] |
| V4UBT1 | E-Value: 0.000e+0, PID: 81.33 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6350... [more] |
| A0A7J7BWN1 | E-Value: 0.000e+0, PID: 78.97 | (U2 snRNP-associated SURP motif-containing protein... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |