Resource Type:
Polypeptide
Name:
XM_017373838.1
Identifier:
XM_017373838.1-protein
Sequence:
MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTS
RGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSP
RKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKA
ITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHS
INGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGS
RAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAK
SINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHAL
NLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDM
DKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSR
VLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHVNQRMPSQHVR
HFLINQMNIVDGRFREPNTVKYSKYESWDDKHKRMASQHVRHSLIDQMNI
VDGRFREPNTVKYSKYESWDDKHKRMASQHVRHSLIDQMNIVDGRFREPN
TVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP
Sequence Length:
648
Sequence Checksum:
5a1e1173ea4a404d6362664bbb802361
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017373838.1, derives from mRNA, XM_017373838.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PHI5 ((Rop guanine nucleotide exchange factor like {ECO:0000313|EMBL:PSR91337.1}))
HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 363/516 (70.35%), Postives = 429/516 (83.14%), Query Frame = 0
HSP 2 Score: 61.2326 bits (147), Expect = 3.710e-7
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0
Match: A0A2R6PHI5 ((Rop guanine nucleotide exchange factor like {ECO:0000313|EMBL:PSR91337.1}))
HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 363/516 (70.35%), Postives = 429/516 (83.14%), Query Frame = 0
Query: 2 MIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHV-NQRMP--SQHVRHFLINQMNIVDGRF 514
M+MRRRLACCTRD+ SLDFD+QE + TYNGLESCI+N+ SYEN+SGTS+GDGCV+DS DED SSCSSSNN GSFSSHWT M +DE+G +E E+++SP+ VKEK Y ++ DVE MK++FAKLLLG+DITGGRKG+S+ALALS ITNLAA VFGELWKLEPLSE+ K KWR+EMDW+LSPTNYM+ELVPAKQH NG+TMEIMTPKAR D+H+NLPALQKLDSMLIETL+SMV TEFWY EGGSRAEGR RQS RWWLP P+VP +GLS+TERKKLLNQGKVVHQVFKAAKSIN++VLLEM VP I++ALPKSGKA+LGE+LY ++AES + EE++ +LNLKSEH ALE INRLEAA LAWK R+ E+ + +SP+ TS SF+KD S+MDKME+LL+Q E L +++K R+P L Q+FLDV KIQYGKDVG +ILEAYSRVL NLAF ILSRIGD+LQE++LSNPNSP FPGVN N P VRH LI+QMN VD +F
Sbjct: 1 MMMRRRLACCTRDREISLDFDEQERITTYNGLESCILNSHSYENESGTSKGDGCVSDSLDEDASSCSSSNNGFGSFSSHWTMMKRDEQGLDEWEVTESPKHFYVKEKPVYSVQFSDVETMKERFAKLLLGEDITGGRKGLSTALALSNGITNLAASVFGELWKLEPLSEDTKSKWRREMDWLLSPTNYMVELVPAKQHDANGRTMEIMTPKARGDVHINLPALQKLDSMLIETLESMVSTEFWYAEGGSRAEGR----RQSRRWWLPLPQVPTSGLSETERKKLLNQGKVVHQVFKAAKSINESVLLEMPVPTIIKDALPKSGKASLGEELYRILSAESISAEEMIDSLNLKSEHSALETINRLEAAVLAWKDRIAEQSSGKSPVRTSWSFIKDPISEMDKMEFLLDQAEDLARQLKTRYPNLAQTFLDVVKIQYGKDVGHSILEAYSRVLRNLAFKILSRIGDILQEDILSNPNSPVPPCCFPGVNLTGNSDSPVLGHPVRHSLIDQMNKVDEQF 512
HSP 2 Score: 61.2326 bits (147), Expect = 3.710e-7
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 581 VRHSLIDQMNIVDGRFREPNTVKYSKYESWD-----DKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
VRHSLIDQMN VD +F Y++ + D + KTS VT TP +SRVWC+GR+AC +SP++SP
Sbjct: 497 VRHSLIDQMNKVDEQFYN----SYARNNASDLEISCAEPKTSSVTATPSRSRVWCIGRDAC---RDISPQNSP 562
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TFE1 ((Uncharacterized protein {ECO:0000313|EMBL:CBI29214.3}))
HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0
Identity = 371/584 (63.53%), Postives = 449/584 (76.88%), Query Frame = 0
HSP 2 Score: 51.2174 bits (121), Expect = 6.790e-4
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0
Match: D7TFE1 ((Uncharacterized protein {ECO:0000313|EMBL:CBI29214.3}))
HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0
Identity = 371/584 (63.53%), Postives = 449/584 (76.88%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSM--MKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFN-FPGVNHVNQR---MPSQHVRHFLINQMNIVDGRFREPNTVKYSKYE-SWDD--------------KHKRMASQHVRHSLIDQMNIVDG--RFREPNTV 561
MM+MRRRLACCTR++ SLD D+QE +MTYNGLE+CI+N SYEN+S TSRGDGC TDS DED +SCSSS +A GSFSS W +M KDE G +E E+ +SP+ VKEK Y + DVE+MK++F+KLLLG+DITGG+KG++SALALS AITNLA VFGELWKLEPLSEERK KW++EMDW+LSPTNYM+ELVPAKQ NG+T+EIMTPKARADIHMNLPALQKLDSMLIETLDSMV TEFWY EGGSRAEGR+ S QS RWWLPSP+VP GLSD ERKKLL+Q KVVHQVFKAA++IN+NVLLEM VP IR+AL KSGKANLGE+LY +TAES + EE+L +LNLKSEH ALE INRLEAA AWK R+ E+ + +SP+ TS SF+KD +++DKME +L + E+L+Q+++ R+P LPQSFLDV KIQYGKD+G +ILEAYSRVL NLA SIL R+ D+LQE+V SNPNSP AT + FPG+N PS +RH LI+QMN+VDGRFR+PN E S+ D K+K+ + H++ +N + G RF P V
Sbjct: 1 MMVMRRRLACCTRERELSLDLDEQERIMTYNGLENCILNGHSYENESHTSRGDGCATDSLDEDDTSCSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSVRFSDVEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQREMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVDTEFWYAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFKAARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHSALEAINRLEAAVFAWKERITEQVSGKSPVRTSWSFIKDPTTELDKMELILFRAEALLQQLRTRYPNLPQSFLDVAKIQYGKDIGHSILEAYSRVLGNLASSILCRMRDILQEDVFSNPNSPIATTSCFPGINLTGMTETPTPSLRIRHSLIDQMNMVDGRFRDPNAGASPDCEASYSDSRRSSVMATPSRSRKYKKKTTTHLKSRFEQGLNYIMGLPRFSRPKGV 584
HSP 2 Score: 51.2174 bits (121), Expect = 6.790e-4
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0
Query: 578 SQHVRHSLIDQMNIVDGRFREPNTVKYSKYE-SWDDKHKTSLVTGTPGQSRVW 629
S +RHSLIDQMN+VDGRFR+PN E S+ D ++S V TP +SR +
Sbjct: 502 SLRIRHSLIDQMNMVDGRFRDPNAGASPDCEASYSDSRRSS-VMATPSRSRKY 553
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AWU5 ((Putative rop guanine nucleotide exchange factor 14 {ECO:0000313|EMBL:MPA60468.1}))
HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0
Identity = 365/529 (69.00%), Postives = 441/529 (83.36%), Query Frame = 0
HSP 2 Score: 72.4034 bits (176), Expect = 1.094e-10
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 0
Match: A0A5B7AWU5 ((Putative rop guanine nucleotide exchange factor 14 {ECO:0000313|EMBL:MPA60468.1}))
HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0
Identity = 365/529 (69.00%), Postives = 441/529 (83.36%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHV---NQRMPSQHVRHFLINQMNIVDGRFREPNTVKYSKYE 526
MM+MR+RLACCTRD+ S+DFD+QE +MTYNGLESCI+N +SY N+SGTSRGDGCVTDS DED SSCSSSNNA GSFSSHW M KDE+G +E E+S SP+ VKEK Y I+ DVE MK++FAKLLLG+D+TGG KG+S+ALALS AITNLAA VFGELWKLEPL EERK KWR+EMDW+LSPTN+M+ELVPAKQ+ NG+++EIMTPKARADIHMNLPALQKLDSMLIETLDSMV TEFWY EGGSRAEGRS S+RQS RWWLPSP+VP +GLSDTERKKLL QGK+V QV KAAKSIN+NVLLEM VP I++ALPKSG+A+LGE++Y +TAES ++EE+L++LNLKSEH LE INRLEAA AWK ++ E+ + +SP+ TS +F+KD S++ K ++LL + E+L+Q++K R+P LPQ+FLDVTKIQYGKDVG++ILEAYSRVL NLAFSILSRIGD+LQEEVLSNPNSP T +FPG+N + + Q +RH LI+ MN V+G+F + N S E
Sbjct: 1 MMMMRKRLACCTRDREISIDFDEQERIMTYNGLESCILNIESYGNESGTSRGDGCVTDSFDEDDSSCSSSNNAFGSFSSHWMMMKKDEEGMDEWEVSKSPQHFYVKEKPTYTIQLSDVETMKERFAKLLLGEDVTGGHKGISTALALSNAITNLAASVFGELWKLEPLPEERKSKWRREMDWLLSPTNHMVELVPAKQNGANGRSLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEGGSRAEGRSRSARQSKRWWLPSPQVPNSGLSDTERKKLLYQGKMVRQVLKAAKSINENVLLEMPVPTIIKDALPKSGRASLGEEVYRILTAESNSIEEMLNSLNLKSEHSVLEAINRLEAAVFAWKEKITEQASGKSPVRTSWTFIKDPISELYKTQFLLERAEALLQQLKTRYPNLPQTFLDVTKIQYGKDVGRSILEAYSRVLGNLAFSILSRIGDILQEEVLSNPNSPVPTCSFPGINLTRVSDSPVLGQRIRHSLIDHMNKVNGQFCDSNAGNASDLE 529
HSP 2 Score: 72.4034 bits (176), Expect = 1.094e-10
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 0
Query: 579 QHVRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
Q +RHSLID MN V+G+F + N S E + KTS +T TP +SRVWC+GREAC S+LSP +SP
Sbjct: 500 QRIRHSLIDHMNKVNGQFCDSNAGNASDLELSCGEAKTSWLTPTPSRSRVWCIGREAC---SSLSPRNSP 566
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AV64 ((Putative rop guanine nucleotide exchange factor 14 {ECO:0000313|EMBL:MPA60469.1}))
HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 362/520 (69.62%), Postives = 435/520 (83.65%), Query Frame = 0
HSP 2 Score: 64.6994 bits (156), Expect = 3.437e-8
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0
Match: A0A5B7AV64 ((Putative rop guanine nucleotide exchange factor 14 {ECO:0000313|EMBL:MPA60469.1}))
HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 362/520 (69.62%), Postives = 435/520 (83.65%), Query Frame = 0
Query: 2 MIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNH---VNQRMPSQHVRHFLINQMNIVDGRFREPN 518
M+MRRRLACCTRD SLDFD+QE +MTYNGL+SCI N+ SYEN+SGTSRGDGC TDS DED SSCSSSNNA GSFSSHW M +DE+ ++ E+S+SP+ VKEK AY I+ DVE MK++FAKLLLG+DITGG KG+S+ALALS AITNLAA +FGELWKLEPL EERK KWR+EMDW+LSPTN+M+ELVPAKQ+ NG+T+EIMTP+ RADIH+NLPALQKLDSMLIETLDSMV TEFWY EGGSRAEGRS S+RQS RWWLPSP+VP +GLS+T RKKLL QGKVVHQV KAAKSIN+NVLLEM VP I++ALPKSGKA+LGE+LY +TAES ++EE+L++LN+KSEH LE INRLEAA AW+ ++ E+ + SP+ TS SF+KD S++DK E+LL + E+L+Q +K R+P LPQ+FLDVTKIQYGKDVG +ILEAYSR+L NLAFSILSRIG++LQE+VLSNPNSP A +FPG N V+ + +H+RH LI+QMN VD +F E N
Sbjct: 1 MMMRRRLACCTRDNEISLDFDEQERVMTYNGLQSCIFNSHSYENESGTSRGDGCATDSLDEDDSSCSSSNNAFGSFSSHWMIMKRDEEAMDDWEVSESPQHFHVKEKPAYTIQFSDVETMKERFAKLLLGEDITGGCKGISTALALSNAITNLAASIFGELWKLEPLPEERKSKWRREMDWLLSPTNHMVELVPAKQNGANGRTLEIMTPRTRADIHLNLPALQKLDSMLIETLDSMVNTEFWYAEGGSRAEGRSRSARQSKRWWLPSPQVPISGLSETRRKKLLYQGKVVHQVLKAAKSINENVLLEMPVPTIIKDALPKSGKASLGEELYRILTAESNSIEEILNSLNMKSEHSVLEAINRLEAAVFAWREKITEQASGNSPVRTSWSFIKDPISELDKTEFLLERAEALLQHLKTRYPNLPQTFLDVTKIQYGKDVGHSILEAYSRILRNLAFSILSRIGEILQEDVLSNPNSPVAICSFPGTNLTRIVDSPILGEHIRHSLIDQMNRVDRQFCELN 520
HSP 2 Score: 64.6994 bits (156), Expect = 3.437e-8
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 579 QHVRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLS 640
+H+RHSLIDQMN VD +F E N S E + KTS TP +SR WC+G+EAC S+S
Sbjct: 499 EHIRHSLIDQMNRVDRQFCELNASIPSDLELSCAEPKTSSAAVTPSRSRAWCIGKEACSSVS 560
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9MUG6 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 732.635 bits (1890), Expect = 0.000e+0
Identity = 381/650 (58.62%), Postives = 458/650 (70.46%), Query Frame = 0
Match: B9MUG6 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 732.635 bits (1890), Expect = 0.000e+0
Identity = 381/650 (58.62%), Postives = 458/650 (70.46%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSS-NNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHVNQRMPSQHVRHFLINQMNIVDGRFREPNTVKYSKYESWDDKHKRMASQHVRHSLI-DQMNIVDGRFREPNTVKYSKYESWDDKHKRMASQHVRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
MMI+RRRLACCTRD+ SLDFD+QE +MTYNGLESCIINNQSYEN+SGTSRG+GCV+DS D+DG S SS +A GSFSS W +M KDE G + EL+ SP+ KEK Y I+ DVE MK+KFAKLLLG+DITGG+ G+S+ALALS AITNLAA VFGELWKLEPL EERK KW++EMDW+LSPTNYM+ELVPAKQ+ NG+ +EIMTPKARADIH+NLPALQKLDSMLI+TLD+MV TEFWY E GSRAEGR+ S++QS RWWLP P+VP GLSD+ RKKLLNQ KVV+QVFKAAKS+N+ VLLEM VP I++ALPKSGKANLGE+LY +TA+S T EE+L++L+LKSEH ALE +N+LEAA AWK R+ + + SP+ TS SF+KD S+ DKME LL+ ESL+Q +K+R+P LPQ+FLD TK+QYGKDVG AILEAYSRVL N+AFSILSRI DV+QE+ L+NP+SPAAT FPG+N HV H VRHSLI D+MN VDG++RE N S E + YS + +TS TP +SRVWC+G +AC S LSP +SP
Sbjct: 1 MMILRRRLACCTRDREISLDFDKQERIMTYNGLESCIINNQSYENESGTSRGEGCVSDSFDDDGCSSCSSSKDAFGSFSSKWLTMKKDEHGLNDWELARSPQHFYDKEKPCYSIQYSDVETMKEKFAKLLLGEDITGGQSGLSTALALSNAITNLAATVFGELWKLEPLPEERKTKWQREMDWLLSPTNYMVELVPAKQNCANGRMLEIMTPKARADIHVNLPALQKLDSMLIDTLDAMVNTEFWYSEVGSRAEGRTKSAKQSKRWWLPLPQVPTTGLSDSGRKKLLNQSKVVYQVFKAAKSVNETVLLEMPVPTIIKDALPKSGKANLGEELYKVLTADSNTAEEMLNSLDLKSEHSALEAVNKLEAAIFAWKERVTAQVSGRSPVRTSWSFVKDPVSEFDKMESLLDSAESLLQLLKSRYPNLPQTFLDSTKVQYGKDVGHAILEAYSRVLGNVAFSILSRIADVMQEDSLTNPSSPAATCCFPGINSSGYVETPVHVLH--------------------------------------VRHSLIIDEMNNVDGKYRESNASHISDQE----------------------------------LSYS-------EARTSSAIATPSRSRVWCIGGDACRS---LSPTNSP 568
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R4J5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 363/527 (68.88%), Postives = 431/527 (81.78%), Query Frame = 0
HSP 2 Score: 59.6918 bits (143), Expect = 1.184e-6
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0
Match: A0A5N6R4J5 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 363/527 (68.88%), Postives = 431/527 (81.78%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHVNQRMPSQHVRHFLINQMNIVDGRFREPNTVKYSKYES 527
MM MRRRLACCTRD+ S+DFD+QE +MTYNGLESCI+NNQSYEN+S TS+GD CVTDS D+ GSSCSSS +A GSFSS W +M +DE+ +E ELS+SP+ VKEK +Y I+ DVE MK+KFAKLLLG+D+TGG KG ++ALALS ITNLAA VFGELWKLEPL EE K KWR+EMDW+LSPTNYM+ELVPAKQ+ NG+T+EIMTPKARADIHMNLPALQKLDSMLIETLDSMV TEFWY EGGSRAEGR+NS RQS RWWLPSP VP GLSDTERKKLL+QG+VVHQVFKAAKSIN+NVLLEM VP I++ALPKSGKA+LGE+LY + AES + +E+L++LNLK EHRALEVINRLEAA AWK ++ E + +SP+ TS SF+KDS S+MDKME LL++ E+L+ +K R+P LP +FL+VTKIQYGKDVG +ILEAYSRVL NLA+SILSRI D+L+E+ LSNPNSP A F G+NH VRH LI+QMN V G + + N+ + ES
Sbjct: 1 MMGMRRRLACCTRDREISIDFDEQERIMTYNGLESCILNNQSYENESRTSKGDECVTDSLDDGGSSCSSSKDAFGSFSSKWLTMKRDEQSYDEWELSESPQHFYVKEKPSYAIQFADVEAMKEKFAKLLLGEDVTGGCKGQTTALALSNGITNLAATVFGELWKLEPLPEESKSKWRKEMDWLLSPTNYMVELVPAKQNGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEGGSRAEGRNNSGRQSKRWWLPSPHVPKTGLSDTERKKLLHQGRVVHQVFKAAKSINENVLLEMPVPAIIKDALPKSGKASLGEELY-KLFAESSSSDEILNSLNLKFEHRALEVINRLEAAIFAWKVKVTEHVSGKSPVRTSWSFIKDSMSEMDKMELLLDRAEALLHHLKIRYPNLPHTFLNVTKIQYGKDVGHSILEAYSRVLGNLAYSILSRIRDILEEDGLSNPNSPVAMPYFSGINHCETSAVDVDVRHSLIDQMNKVHGHYCDSNSSSTCELES 526
HSP 2 Score: 59.6918 bits (143), Expect = 1.184e-6
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0
Query: 581 VRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
VRHSLIDQMN V G + + N+ + ES K S V TP +R+WC+ RE C S +SP+SSP
Sbjct: 498 VRHSLIDQMNKVHGHYCDSNSSSTCELESSFSDAKASSVATTPSWNRLWCIDREVCVS---VSPKSSP 562
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6M2F2I2 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0
Identity = 354/531 (66.67%), Postives = 427/531 (80.41%), Query Frame = 0
HSP 2 Score: 62.3882 bits (150), Expect = 1.506e-7
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0
Match: A0A6M2F2I2 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0
Identity = 354/531 (66.67%), Postives = 427/531 (80.41%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSS-NNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHVNQRMPSQHVRH----FLINQMNIVDGRFREPNTVKYSKYE 526
MMI+RRRLACCTRD+ S+DFD+QE +MTYNGLESCIINNQSYEN+SGTSRG+GCV+DS D+DG S SS +A GSFSS W +M KDE G + EL+ SP+ KEK Y I+ DVE MK+KFAKLLLG+DITGGR G+S+ALALS AITNLAA VFGELWKLEPL EERK KW++EMDW+LSPTNYM+ELVPAKQ+ NG+ +EIMTPKARADIH+NLPALQKLDSMLI+TLD+MV TEFWY E GSRAEGR+ S++QS RWWLP P+VP GLSD+ RKKLLNQ KVV+QVFKAAKS+N+ +LLEM VP I++ALPKSGKANLGE+LY +TA+S T EE+L++L+LKSEH ALE +N+LEAA AWK R+ + + SP+ TS SF+KD S+ D+ME LL+ ESLVQ +K+R+P LPQ+FLD TK+QYGKDVG AILEAYSRVL N+AFSILSRI DV+QE+ L+NP+SPAAT FPG+N HV H +I++MN VDG++RE N S E
Sbjct: 1 MMILRRRLACCTRDREISIDFDKQERIMTYNGLESCIINNQSYENESGTSRGEGCVSDSFDDDGCSSCSSSKDAFGSFSSKWLTMKKDEHGLNDWELAGSPQHFYDKEKPCYSIQYSDVETMKEKFAKLLLGEDITGGRSGLSAALALSNAITNLAATVFGELWKLEPLPEERKSKWQREMDWLLSPTNYMVELVPAKQNCANGRMLEIMTPKARADIHVNLPALQKLDSMLIDTLDAMVNTEFWYSEVGSRAEGRTKSAKQSKRWWLPLPQVPTTGLSDSGRKKLLNQSKVVYQVFKAAKSVNETILLEMPVPTIIKDALPKSGKANLGEELYKVLTADSNTAEEMLNSLDLKSEHSALEAVNKLEAAIFAWKERVTAQVSGRSPVRTSWSFVKDPVSEFDRMESLLDSAESLVQLLKSRYPNLPQTFLDSTKVQYGKDVGHAILEAYSRVLGNVAFSILSRIADVMQEDSLTNPSSPAATCCFPGINSSGYVETPGHVLHVRQSLIIDEMNNVDGKYRESNASHISDQE 531
HSP 2 Score: 62.3882 bits (150), Expect = 1.506e-7
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0
Query: 580 HVRHSLI-DQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
HVR SLI D+MN VDG++RE N S E + +TS TP + RVWC+G +AC S LSP +SP
Sbjct: 502 HVRQSLIIDEMNNVDGKYRESNASHISDQELSYSEARTSSAIATPSRGRVWCIGGDACRS---LSPTNSP 568
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061G8A5 ((RHO guanyl-nucleotide exchange factor 14 isoform 1 {ECO:0000313|EMBL:EOY25392.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 361/516 (69.96%), Postives = 429/516 (83.14%), Query Frame = 0
HSP 2 Score: 55.0694 bits (131), Expect = 3.099e-5
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Match: A0A061G8A5 ((RHO guanyl-nucleotide exchange factor 14 isoform 1 {ECO:0000313|EMBL:EOY25392.1}))
HSP 1 Score: 725.317 bits (1871), Expect = 0.000e+0
Identity = 361/516 (69.96%), Postives = 429/516 (83.14%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVN-HVNQRMPS--QHVRHFLINQMNIVDGR 513
MM+MR+RL CCTRD+ SLDFD+Q+ +MTYNGLESCI+NN+SYEN+S TSRGDGC +DS D+D SSCSSS +A GSFSS W +M +DE+G +E ELS+SP+K KEK AY I+ D+E MK+KF+KLLLG+DITGGRKGVS+ALALS AITNLAA VFGELWKLEPL+EERK KWR+EMDW+LSPTNYM+ELVPAKQ NG+TMEIMTPKARADIHMNLPALQKLDSMLIETL+SMV TEFWY E GSRAEGR+ S+++S RWWLP P+VP GLSDTERKKL +GKVVHQVFKAAKSIN+NVLLEM VP IR+ALPKS KANL +DLY +T ES +VE++ +LNLKSEH ALE INRLEAA AWK R+ E+ + +SP+ TS SF+KD S+MDKME LL++ E+LVQ+IK+ +P LPQ+FLD TKIQYGKDVG +ILEAYSRVL NLAFSI+SRIG++LQE+ LSNPNSP AT FPG+N N + P+ R LI+QMN DG+
Sbjct: 68 MMLMRKRLVCCTRDREISLDFDEQDRIMTYNGLESCILNNESYENESRTSRGDGCASDSLDDDFSSCSSSKDAFGSFSSKWMTMKRDEQGSDEWELSESPKKFYAKEKPAYAIQFSDIETMKEKFSKLLLGEDITGGRKGVSTALALSNAITNLAASVFGELWKLEPLAEERKNKWRREMDWLLSPTNYMVELVPAKQSGANGRTMEIMTPKARADIHMNLPALQKLDSMLIETLESMVNTEFWYAEVGSRAEGRNKSAKESKRWWLPLPQVPKTGLSDTERKKLQCKGKVVHQVFKAAKSINENVLLEMPVPSIIRDALPKSAKANLSDDLYKVLTMESSSVEDMFISLNLKSEHNALEPINRLEAAVFAWKERIAEQASGKSPVRTSWSFIKDPISEMDKMELLLDRAEALVQQIKSTYPNLPQTFLDATKIQYGKDVGHSILEAYSRVLRNLAFSIMSRIGEILQEDTLSNPNSPVATLCFPGMNMKGNLQTPACGPRARQSLIDQMNRADGK 583
HSP 2 Score: 55.0694 bits (131), Expect = 3.099e-5
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 580 HVRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
R SLIDQMN DG++ + ++ YS+ E ++ + S V TP +SRVWC+G+EAC +SP +SP
Sbjct: 568 RARQSLIDQMNRADGKYCDSDSSSYSEREVSYNEARRSCVNATPSRSRVWCIGKEACIG---VSPRNSP 633
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5NQA3 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 354/531 (66.67%), Postives = 427/531 (80.41%), Query Frame = 0
HSP 2 Score: 63.929 bits (154), Expect = 5.513e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Match: A0A4U5NQA3 (PRONE domain-containing protein {ECO:0000259|PROSITE:PS51334})
HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 354/531 (66.67%), Postives = 427/531 (80.41%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSS-NNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVNHVNQRMPSQHVRH----FLINQMNIVDGRFREPNTVKYSKYE 526
MMI+RRRLACCTRD+ SLDFD+QE +MTYNGLESCIINNQSYEN+SGTSRG+GCV+DS D+DG S SS +A GSFSS W ++ KDE G + EL+ SP+ KEK Y I+ DVE MK+KFAKLLLG+DITGGR G+S+ALALS AITNLAA VFGELWKLEPL EERK KW++EMDW+LSPTNYM+ELVPAKQ+ NG+ +EIMTPKARADIH+NLPALQKLDSMLI+TLD+MV TEFWY E GSRAEGR+ S++QS RWWLP P+VP GLSD+ RKKLLNQ KVV+QVFKAAKS+N+ +LLEM VP I++ALPKSGKANLGE+LY +TA+S T EE+L++L+LKSEH ALE +N+LEAA AWK R+ + + SP+ TS SF+KD S+ DKME LL+ ESL+Q +K+R+P LPQ+FLD TK+QYGKDVG AILEAYSRVL N+AFSILSRI DV+QE+ L+NP+SPAAT FPG+N HV H +I++MN VDG++RE N S E
Sbjct: 1 MMILRRRLACCTRDREISLDFDKQERIMTYNGLESCIINNQSYENESGTSRGEGCVSDSFDDDGCSSCSSSKDAFGSFSSKWLTVKKDEHGLNDWELAGSPQHFYDKEKPCYSIQYSDVETMKEKFAKLLLGEDITGGRSGLSTALALSNAITNLAATVFGELWKLEPLPEERKTKWQREMDWLLSPTNYMVELVPAKQNCANGRMLEIMTPKARADIHVNLPALQKLDSMLIDTLDAMVNTEFWYSEVGSRAEGRTKSAKQSKRWWLPLPQVPTTGLSDSGRKKLLNQSKVVYQVFKAAKSVNETILLEMPVPTIIKDALPKSGKANLGEELYKVLTADSNTAEEMLNSLDLKSEHSALEAVNKLEAAIFAWKERVTAQVSGRSPVRTSWSFVKDPVSEFDKMESLLDSAESLLQLLKSRYPSLPQTFLDSTKVQYGKDVGHAILEAYSRVLGNVAFSILSRIADVMQEDSLTNPSSPAATCCFPGINSSGYVETPGHVLHVRQSLIIDEMNNVDGKYRESNASHISDQE 531
HSP 2 Score: 63.929 bits (154), Expect = 5.513e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 580 HVRHSLI-DQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
HVR SLI D+MN VDG++RE N S E + +TS TP +SRVWC+G +AC S LSP +SP
Sbjct: 502 HVRQSLIIDEMNNVDGKYRESNASHISDQELSYSEARTSSAIATPSRSRVWCIGGDACRS---LSPTNSP 568
BLAST of XM_017373838.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061GEC5 ((RHO guanyl-nucleotide exchange factor 14 isoform 2 {ECO:0000313|EMBL:EOY25394.1}))
HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0
Identity = 361/516 (69.96%), Postives = 429/516 (83.14%), Query Frame = 0
HSP 2 Score: 55.0694 bits (131), Expect = 3.043e-5
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Match: A0A061GEC5 ((RHO guanyl-nucleotide exchange factor 14 isoform 2 {ECO:0000313|EMBL:EOY25394.1}))
HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0
Identity = 361/516 (69.96%), Postives = 429/516 (83.14%), Query Frame = 0
Query: 1 MMIMRRRLACCTRDQNTSLDFDQQESMMTYNGLESCIINNQSYENDSGTSRGDGCVTDSHDEDGSSCSSSNNASGSFSSHWTSMMKDEKGREELELSDSPRKLCVKEKQAYKIEKLDVEIMKQKFAKLLLGDDITGGRKGVSSALALSKAITNLAALVFGELWKLEPLSEERKKKWRQEMDWILSPTNYMIELVPAKQHSINGQTMEIMTPKARADIHMNLPALQKLDSMLIETLDSMVGTEFWYVEGGSRAEGRSNSSRQSNRWWLPSPKVPAAGLSDTERKKLLNQGKVVHQVFKAAKSINKNVLLEMSVPDFIREALPKSGKANLGEDLYSNMTAESPTVEEVLHALNLKSEHRALEVINRLEAAALAWKHRMLEKRNYESPIHTSLSFLKDSESDMDKMEYLLNQTESLVQEIKARFPKLPQSFLDVTKIQYGKDVGQAILEAYSRVLANLAFSILSRIGDVLQEEVLSNPNSPAATFNFPGVN-HVNQRMPS--QHVRHFLINQMNIVDGR 513
MM+MR+RL CCTRD+ SLDFD+Q+ +MTYNGLESCI+NN+SYEN+S TSRGDGC +DS D+D SSCSSS +A GSFSS W +M +DE+G +E ELS+SP+K KEK AY I+ D+E MK+KF+KLLLG+DITGGRKGVS+ALALS AITNLAA VFGELWKLEPL+EERK KWR+EMDW+LSPTNYM+ELVPAKQ NG+TMEIMTPKARADIHMNLPALQKLDSMLIETL+SMV TEFWY E GSRAEGR+ S+++S RWWLP P+VP GLSDTERKKL +GKVVHQVFKAAKSIN+NVLLEM VP IR+ALPKS KANL +DLY +T ES +VE++ +LNLKSEH ALE INRLEAA AWK R+ E+ + +SP+ TS SF+KD S+MDKME LL++ E+LVQ+IK+ +P LPQ+FLD TKIQYGKDVG +ILEAYSRVL NLAFSI+SRIG++LQE+ LSNPNSP AT FPG+N N + P+ R LI+QMN DG+
Sbjct: 1 MMLMRKRLVCCTRDREISLDFDEQDRIMTYNGLESCILNNESYENESRTSRGDGCASDSLDDDFSSCSSSKDAFGSFSSKWMTMKRDEQGSDEWELSESPKKFYAKEKPAYAIQFSDIETMKEKFSKLLLGEDITGGRKGVSTALALSNAITNLAASVFGELWKLEPLAEERKNKWRREMDWLLSPTNYMVELVPAKQSGANGRTMEIMTPKARADIHMNLPALQKLDSMLIETLESMVNTEFWYAEVGSRAEGRNKSAKESKRWWLPLPQVPKTGLSDTERKKLQCKGKVVHQVFKAAKSINENVLLEMPVPSIIRDALPKSAKANLSDDLYKVLTMESSSVEDMFISLNLKSEHNALEPINRLEAAVFAWKERIAEQASGKSPVRTSWSFIKDPISEMDKMELLLDRAEALVQQIKSTYPNLPQTFLDATKIQYGKDVGHSILEAYSRVLRNLAFSIMSRIGEILQEDTLSNPNSPVATLCFPGMNMKGNLQTPACGPRARQSLIDQMNRADGK 516
HSP 2 Score: 55.0694 bits (131), Expect = 3.043e-5
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 580 HVRHSLIDQMNIVDGRFREPNTVKYSKYESWDDKHKTSLVTGTPGQSRVWCLGREACGSLSTLSPESSP 648
R SLIDQMN DG++ + ++ YS+ E ++ + S V TP +SRVWC+G+EAC +SP +SP
Sbjct: 501 RARQSLIDQMNRADGKYCDSDSSSYSEREVSYNEARRSCVNATPSRSRVWCIGKEACIG---VSPRNSP 566
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PHI5 | E-Value: 3.710e-7, PID: 70.35 | (Rop guanine nucleotide exchange factor like {ECO:... [more] |
| D7TFE1 | E-Value: 6.790e-4, PID: 63.53 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2921... [more] |
| A0A5B7AWU5 | E-Value: 1.094e-10, PID: 69.00 | (Putative rop guanine nucleotide exchange factor 1... [more] |
| A0A5B7AV64 | E-Value: 3.437e-8, PID: 69.62 | (Putative rop guanine nucleotide exchange factor 1... [more] |
| B9MUG6 | E-Value: 0.000e+0, PID: 58.62 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5N6R4J5 | E-Value: 1.184e-6, PID: 68.88 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A6M2F2I2 | E-Value: 1.506e-7, PID: 66.67 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A061G8A5 | E-Value: 3.099e-5, PID: 69.96 | (RHO guanyl-nucleotide exchange factor 14 isoform ... [more] |
| A0A4U5NQA3 | E-Value: 5.513e-8, PID: 66.67 | PRONE domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A061GEC5 | E-Value: 3.043e-5, PID: 69.96 | (RHO guanyl-nucleotide exchange factor 14 isoform ... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |