Resource Type:
Polypeptide
Name:
XM_017384092.1
Identifier:
XM_017384092.1-protein
Sequence:
MAAAKSSVDIEVEDREQADETSKSFEELGVDARLIRALSKKGVNKPTPIQ
CSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVF
IVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPD
ILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKAL
TVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSK
NIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQ
FGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGD
NAVKKKSKRRAKDTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTG
RAHDLGESVSLVAPEEENVFEEIEALLGENGPDSNPIAKFRFPTENAVES
LRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLK
HDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRR
GSQGKSRNRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT
Sequence Length:
596
Sequence Checksum:
eb0612587874438afe31c66730645554
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017384092.1, derives from mRNA, XM_017384092.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BD55 ((Uncharacterized protein {ECO:0000313|EMBL:MPA66802.1}))
HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 420/602 (69.77%), Postives = 484/602 (80.40%), Query Frame = 0
Match: A0A5B7BD55 ((Uncharacterized protein {ECO:0000313|EMBL:MPA66802.1}))
HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 420/602 (69.77%), Postives = 484/602 (80.40%), Query Frame = 0
Query: 1 MAAAKSSVDIEVEDREQADETSKSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK----DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGEN-GPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
MA ++ E +D+E+ +E ++FEELG+D RLI AL+KK V PTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP++QKLFS+ S +K AP FI+VPTRELCQQVY+EA+SLIELCRVQLKVVQ T+ +DL+ LAG P+ILVSTP I CL G+LQ +QDSLS+LVLDEADLLLS+G+ NDLKALT H+PR+CQCLLMSAT S +VE L + +LHNPYILTL + G+ KDEI+ KN+QQ++I CS+RDKLVHILALLKL LVQKKVLIFTNTIDM FRLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD SKEKE+ DG++ V+++ R+ D+E GV RGIDFKNVHTVINFDMPQSA YVHRIGRTGRA+ G SVSLV+PEE FEEI ++ GEN DSN IA F T+NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQ+NPKDLDLLKHDK LSKKAPA HLRDVP YLLDPTTQEASKIVKL A M N N RR+G +GK R N+DPLKSFSA+ K + KGGMKRKG DG+ KSK K +
Sbjct: 1 MANETDNLPQETKDQEEQEE-DQTFEELGLDPRLIHALTKKSVENPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLVQKLFSDSSSKKNLAPTAFILVPTRELCQQVYSEALSLIELCRVQLKVVQLTSTMSASDLRTTLAGPPEILVSTPACIQTCLSKGILQSTSVQDSLSILVLDEADLLLSYGYENDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPYILTLPEVGDVKDEIIPKNVQQFWISCSTRDKLVHILALLKLGLVQKKVLIFTNTIDMGFRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSQSKEKEQ-ADGESHVERRKARKHAKKKLDSEFGVVRGIDFKNVHTVINFDMPQSAAGYVHRIGRTGRAYKTGASVSLVSPEEMETFEEIRSIFGENENKDSNFIAPFPLLTKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQDNPKDLDLLKHDKVLSKKAPATHLRDVPEYLLDPTTQEASKIVKLARAAM-GNTNPTRRKGLKGKFRTNKDPLKSFSAEAPKKAFKGGMKRKGKDGNDSHKSKKKQS 599
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U290 ((Uncharacterized protein {ECO:0000313|EMBL:CDP02636.1}))
HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 404/579 (69.78%), Postives = 474/579 (81.87%), Query Frame = 0
Match: A0A068U290 ((Uncharacterized protein {ECO:0000313|EMBL:CDP02636.1}))
HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0
Identity = 404/579 (69.78%), Postives = 474/579 (81.87%), Query Frame = 0
Query: 23 KSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGE-NGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
+SFE+LG+D RLIRAL KK ++KPTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP+LQKLFS+ + AP FI+ PTRELCQQVY E MSLIELCRVQLKVVQ T+ +DL+ ALAG PDILVSTP + CL GVLQ K +QDSLS++VLDEADLLLS+G+ +DLKALT H+PR+CQCLLMSAT S +VE L R +LHNPYILTL + G+ KD+I+ KN+QQ+YI C++RDKLVHILALLKLELVQKKVLIFTN ID S+RLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD +EK+K G NA +KK+++ AK D E GV RGIDFKNVHTV+NF+MPQSA YVHRIGRTGRA++ G SVSLV+PEE ++FE+I++++GE + DSN IA F T+NAVE LRYRAEDVARSVTK+AVRESRAQDLRNEILNSEKLKAHFQ+NP+DLDLLKHDK LSKK PAPHLRDVP YLLDPTTQEA KIVKL A M NNN+ARR+G +GK R +RDPLK+FSA+ + SKGGM+R+G D+ K K K T
Sbjct: 50 RSFEDLGLDPRLIRALIKKNIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFSDSPSKHNQAPTAFILAPTRELCQQVYAEVMSLIELCRVQLKVVQLTSSMSNSDLRTALAGPPDILVSTPACVHTCLSDGVLQQKAVQDSLSIIVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKRLILHNPYILTLPEVGDLKDDIIPKNVQQFYISCTARDKLVHILALLKLELVQKKVLIFTNAIDTSYRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSQPQEKKKFDSGSNAEQKKARKHAKQKLDAEFGVVRGIDFKNVHTVLNFEMPQSAAGYVHRIGRTGRAYNTGASVSLVSPEENDMFEDIKSIIGESDNMDSNFIAPFPLLTKNAVEGLRYRAEDVARSVTKVAVRESRAQDLRNEILNSEKLKAHFQDNPRDLDLLKHDKVLSKKDPAPHLRDVPEYLLDPTTQEARKIVKLVRAAM-GNNNTARRKGFKGKFRKSRDPLKTFSAEASRRPSKGGMRRRGPGCDASHKRKRKET 627
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BUE2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546609.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 428/611 (70.05%), Postives = 490/611 (80.20%), Query Frame = 0
Match: A0A5J5BUE2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546609.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 428/611 (70.05%), Postives = 490/611 (80.20%), Query Frame = 0
Query: 1 MAAAKSSVDIEVEDREQADETSKSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLIL---------EGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAV-KKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGEN-GPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
MA A S+ E +DRE+ +E ++FEELG+D RLIRAL+KK + PTPIQ A+PLIL EGKDVV RA TGSGKTFAYLLP+LQKLFS S +K+ AP FI VPTRELCQQVY+EA+SLIELCRVQ+KVVQ T+ +DL+ LAG P+ILVSTP I CL G+LQ +QDSLS+LVLDEADLLLS+G+ +DLKALT H+PR CQCLLMSAT S +VE L +LHNPYILTL + G+ KDEI+ KN+QQ++I C +RDKLVHILALLKLELVQK+VLIFTNTIDM FRLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD SKEKE+ GDGD+ V ++K ++ AK D+E GV RGIDFKNVHTVINFDMPQSA YVHRIGRTGRA+ G SVSLV+P+E +FEEI ++LGEN DSN IA F T+NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQ+NPKDLDLLKHDK LSKKAPAPHLRDVP YLLDPTTQEASKIVKL A M N NSARR+G +GK R NRDPLK+FSA+ KN+ KGGMKRKG G KSK K +
Sbjct: 1 MANATDSLLYETKDREEQEE-DQTFEELGLDPRLIRALTKKNIENPTPIQRVAIPLILVCSHFSLFSEGKDVVARAKTGSGKTFAYLLPLLQKLFSNSSSKKRLAPNAFIFVPTRELCQQVYSEALSLIELCRVQMKVVQLTSTMSASDLRTTLAGPPEILVSTPACIQTCLSKGILQPTSVQDSLSILVLDEADLLLSYGYEDDLKALTAHVPRGCQCLLMSATSSADVEKLKNLILHNPYILTLPEVGDVKDEIIPKNVQQFWISCGARDKLVHILALLKLELVQKRVLIFTNTIDMGFRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHSKEKEQ-GDGDSHVERRKGRKHAKKKLDSEFGVVRGIDFKNVHTVINFDMPQSAAGYVHRIGRTGRAYKTGASVSLVSPDEMEIFEEIRSILGENENKDSNFIAPFPLLTKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQDNPKDLDLLKHDKALSKKAPAPHLRDVPEYLLDPTTQEASKIVKLARAAM-GNTNSARRKGLKGKLRKNRDPLKTFSAEAPKNAFKGGMKRKGKGGSDSYKSKKKQS 608
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HZZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5958382.1}))
HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 412/602 (68.44%), Postives = 484/602 (80.40%), Query Frame = 0
Match: A0A7J7HZZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5958382.1}))
HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 412/602 (68.44%), Postives = 484/602 (80.40%), Query Frame = 0
Query: 1 MAAAKSSVDIEVEDREQADETS-KSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGENGP-DSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
MA A + E ED E+ ++ ++FEELG+D RLIRAL+KKG++ PTPIQ A+PLIL GKDVV RA TGSGKTFAY+LP+LQKLFS+ + K AP FI+VPTREL QQVY+EA+SLIELCRVQLKVVQ + +DLK ALAG PDILVSTP I CL GVL +Q+SLS+LVLDEADLLLS+G+ +DLKALT HIPR+CQCLLMSAT S +VE L + +LHNPYILTL + G+ KD+I+ +N+QQ++I CS+RDKLV+ILALLKLELVQKKVLIFTNTIDM FRLKLF EQFGIKSAV NSELP NSR HI+E F+AGLFDY+IATDD SK+++ D + + +KKS++ AK D+E GV RGIDFKNVHTVINFDMPQS Y+HRIGRTGRA++ G SVSLV+PEE +FEEI++ LGE+ DSN IA F T+NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQ+NP+DLDLLKHDK LSKKAPAPHLRDVP YLLDPTTQEASK++KL A M N NS R+G +GK R N +PLKSFSA+ K KGGMKRKG D D G ++K K +
Sbjct: 1 MATATDKLSHENEDHEKEEQDDDQTFEELGLDPRLIRALTKKGIDNPTPIQRVAIPLILAGKDVVARAKTGSGKTFAYVLPLLQKLFSDSASNKNLAPTAFILVPTRELNQQVYSEALSLIELCRVQLKVVQLMSTMSASDLKTALAGPPDILVSTPACIKTCLSKGVLNPTSVQNSLSILVLDEADLLLSYGYEDDLKALTAHIPRRCQCLLMSATSSADVEKLKKLILHNPYILTLPEVGDVKDDIIPQNVQQFWISCSARDKLVYILALLKLELVQKKVLIFTNTIDMGFRLKLFFEQFGIKSAVLNSELPQNSRLHILEEFNAGLFDYLIATDDSQSKKEQADVES-HVEQKKSRKHAKRKLDSEFGVVRGIDFKNVHTVINFDMPQSGAGYIHRIGRTGRAYNTGASVSLVSPEEMEIFEEIKSALGEDETRDSNFIAPFPLLTKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQDNPRDLDLLKHDKVLSKKAPAPHLRDVPEYLLDPTTQEASKVIKLARAAM-GNTNSGHRKGFKGKFRKNSNPLKSFSAEAPKRGFKGGMKRKGKDKDDGHRNKKKQS 600
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6T6J9 ((LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 16-like {ECO:0000313|RefSeq:XP_027073446.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 401/579 (69.26%), Postives = 471/579 (81.35%), Query Frame = 0
Match: A0A6P6T6J9 ((LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 16-like {ECO:0000313|RefSeq:XP_027073446.1}))
HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 401/579 (69.26%), Postives = 471/579 (81.35%), Query Frame = 0
Query: 23 KSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGE-NGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
+SFE+LG+D RLIRAL KK ++KPTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP+LQKLFS+ + AP FI+ PTRELCQQVY E MSLIELCRVQLKVVQ T+ +DL+ ALAG PDILVSTP + CL GVLQ K +QDSLS++VLDEADLLLS+G+ +DLKALT H+PR+CQCLLMSAT S +VE L R +LHNPYILTL + G+ KD+I+ N+QQ+YI C++RDKLVH LALLKLELVQKKVLIFTN ID S+RLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD +EK+K G NA +KK+++ K D E GV RGIDFKNVHTV+NF+MPQSA YVHRIGRTGRA++ G SVSLV+PEE ++FE+I++++GE + DSN IA F T+NAVE LRYRAEDVARSVTK+AVRESRAQDLRNEILNSEKLKAHFQ+NP+DLDLLKHDK LSKK PAPHLRDVP YLLDPTTQEA KIVKL A M NNN+ARR+G +GK R +RDPLK+FSA+ + SKGGM+R+G D+ K K K T
Sbjct: 50 RSFEDLGLDPRLIRALIKKNIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFSDSPSKHNQAPTAFILAPTRELCQQVYAEVMSLIELCRVQLKVVQLTSSMSNSDLRTALAGPPDILVSTPACVHTCLSDGVLQQKAVQDSLSIIVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKRLILHNPYILTLPEVGDLKDDIIPXNVQQFYISCTARDKLVHXLALLKLELVQKKVLIFTNAIDTSYRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSQPQEKKKFDSGSNAEQKKARKHXKQKLDAEFGVVRGIDFKNVHTVLNFEMPQSAXGYVHRIGRTGRAYNTGASVSLVSPEENDMFEDIKSIIGESDNMDSNFIAPFPLLTKNAVEXLRYRAEDVARSVTKVAVRESRAQDLRNEILNSEKLKAHFQDNPRDLDLLKHDKVLSKKDPAPHLRDVPEYLLDPTTQEARKIVKLVRAAM-GNNNTARRKGFKGKFRKSRDPLKTFSAEASRRPSKGGMRRRGPGCDASHKRKRKET 627
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAS4 ((DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:PSR87907.1}))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 406/575 (70.61%), Postives = 471/575 (81.91%), Query Frame = 0
Match: A0A2R6PAS4 ((DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:PSR87907.1}))
HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 406/575 (70.61%), Postives = 471/575 (81.91%), Query Frame = 0
Query: 28 LGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAV-KKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGE-NGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
LG+D RL+RAL+KKGV+KPTPIQ A+PLILEGKDVV RA TGSGKTFAY+LP+LQKLFS+ +KK P F+++PTRELCQQVY+E +SLIELCRVQLKV+Q T+ +DL ALAG PDILVSTP I C GVL+ +QDSLS+LVLDEADLLLS+G+ +DLKALT HIPR+CQCLLMSAT S +VE L + +LHNP+ILTL + G+ KDEI+ KN+QQ++I CS+RDKLV++LALLKLELVQKKVLIFTNTIDMSFRLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD KEK K DGD+ +K+S++ AK D+E GV RGIDFKNVHTVINFDMPQSA YVHRIGRTGRA++ G SVSLV+PEE VFEEI+++LGE DSN IA F T+NAVESLRYRAEDVARSVTKIAVRESRA+DLRNEILNSEKLKAHFQ+NPKDLDLLKHDK LSKKAPA HLRDVP YLLDPTTQEASKIVKL A M N N+ARR+G +GK R ++DPLKS SA+ K KGGMKRKG + D + K K +
Sbjct: 30 LGLDPRLVRALTKKGVDKPTPIQRVAIPLILEGKDVVARATTGSGKTFAYVLPLLQKLFSDSGSKKKLGPTAFVLIPTRELCQQVYSEILSLIELCRVQLKVIQLTSTMSSSDLSTALAGPPDILVSTPACIQSCFSKGVLRPTSVQDSLSMLVLDEADLLLSYGYEDDLKALTAHIPRRCQCLLMSATSSADVEKLKKLILHNPFILTLPEEGDTKDEIIPKNVQQFWISCSARDKLVYVLALLKLELVQKKVLIFTNTIDMSFRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDNQLKEK-KQVDGDSHTERKRSRKHAKQKLDSEFGVVRGIDFKNVHTVINFDMPQSAAGYVHRIGRTGRAYNTGASVSLVSPEEMKVFEEIKSILGERENKDSNFIAPFPLLTKNAVESLRYRAEDVARSVTKIAVRESRAKDLRNEILNSEKLKAHFQDNPKDLDLLKHDKVLSKKAPASHLRDVPEYLLDPTTQEASKIVKLARAAM-GNTNAARRKGFKGKFRKDKDPLKSLSAETPKKGFKGGMKRKGKEKDDSHRHKKKQS 602
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9UDZ9 ((DEAD-box ATP-dependent RNA helicase 16 {ECO:0000313|RefSeq:XP_011099415.1}))
HSP 1 Score: 793.112 bits (2047), Expect = 0.000e+0
Identity = 400/569 (70.30%), Postives = 465/569 (81.72%), Query Frame = 0
Match: A0A6I9UDZ9 ((DEAD-box ATP-dependent RNA helicase 16 {ECO:0000313|RefSeq:XP_011099415.1}))
HSP 1 Score: 793.112 bits (2047), Expect = 0.000e+0
Identity = 400/569 (70.30%), Postives = 465/569 (81.72%), Query Frame = 0
Query: 24 SFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGD--GDNAVKKKSKRRAKDTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGE-NGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGK-SRNRDPLKSFSAQGQKNSSKGGMKRKGTDGDSG 588
SFEELG+D+RLIRALSKK + KPTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP+LQKLF++ +K +APA FI+VPTRELCQQVY+EAMSLIELCRVQLKVVQ T+ +DLK +LAG PDI+VSTP + CL G+LQ + +Q+SLSVLVLDEADLLLS+G+ +DLKALT H+P++CQCLLMSAT S +VE L + +LHNPYILTL + G+ KD+I+ KN+QQ+YI CS+RDKLVHILALLKLELVQKKVLIF N+IDMSFRLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATD + E+ D + KK +R D E GV RGIDFKNVHTV+NF+MPQ+A YVHRIGRTGRA++ G SVSLV+PEE +FEEI++LLGE + DS IA F ++NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQ+NPKDLDLLKHDK LSK APA HLRDVP YLLDPTTQEASKIVKL A M N +S RR+G +GK R+RDPLK+FSA+G K GMKRKG + D G
Sbjct: 44 SFEELGLDSRLIRALSKKSIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFADSPSKKSSAPAAFILVPTRELCQQVYSEAMSLIELCRVQLKVVQLTSTMSPSDLKTSLAGFPDIIVSTPACVQTCLSSGMLQARALQESLSVLVLDEADLLLSYGYEDDLKALTAHVPKRCQCLLMSATSSADVEKLKKLILHNPYILTLPEVGDVKDDIIPKNVQQFYISCSARDKLVHILALLKLELVQKKVLIFANSIDMSFRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQTAEEHNDKESRAPRKKSKKHSKRKLDAEFGVVRGIDFKNVHTVVNFEMPQTAAGYVHRIGRTGRAYNTGASVSLVSPEEMEIFEEIKSLLGESDSVDSKFIAPFPLLSKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQDNPKDLDLLKHDKVLSKNAPAQHLRDVPEYLLDPTTQEASKIVKLARAAM-GNPSSTRRKGFRGKFKRSRDPLKTFSAEGPKRPHGAGMKRKGKNQDDG 611
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TDH2 ((DEAD-box ATP-dependent RNA helicase 16-like {ECO:0000313|RefSeq:XP_027076564.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 405/579 (69.95%), Postives = 476/579 (82.21%), Query Frame = 0
Match: A0A6P6TDH2 ((DEAD-box ATP-dependent RNA helicase 16-like {ECO:0000313|RefSeq:XP_027076564.1}))
HSP 1 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 405/579 (69.95%), Postives = 476/579 (82.21%), Query Frame = 0
Query: 23 KSFEELGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK---DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGE-NGPDSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKSR-NRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
+SFE+LG+D RLIRAL KK ++KPTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP+LQKLFS+ + AP FI+ PTRELCQQVY E MSLIELCRVQLKVVQ T+ +DL+ ALAG PDI+VSTP + CL GVLQ K +QDSLS++VLDEADLLLS+G+ +DLKALT H+PR+CQCLLMSAT S +VE L R +LHNPYILTL + G+ KD+I+ KN+QQ+YI CS+RDKLVHILALLKLELVQKKVLIFTN ID S+RLKLF EQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IATDD +EK+K G NAV+KK+++ AK D E GV RGIDFKNVHTV+NF+MPQSA YVHRIGRTGRA++ G SVSLV+PEE ++FE+I++++GE + DSN IA F T+NAVE LRYRAEDVARSVTK+AVRESRAQDLRNEILNSEKLKAHFQ+NP+DLDLLKHDK LSKK PAPHLRDVP YLLDPTTQEA KIVKL A M NNN+ARR+G +GK R +RDPLK+FSA+ + SKGG++R+G D+G K K K T
Sbjct: 47 RSFEDLGLDPRLIRALIKKNIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFSDSPSKHNQAPTAFILAPTRELCQQVYAEVMSLIELCRVQLKVVQLTSSMSNSDLRTALAGPPDIIVSTPACVHTCLSDGVLQQKAVQDSLSIIVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKRLILHNPYILTLPEVGDLKDDIIPKNVQQFYISCSARDKLVHILALLKLELVQKKVLIFTNAIDTSYRLKLFFEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSQPQEKKKFDSGSNAVQKKARKHAKQKLDAEFGVVRGIDFKNVHTVLNFEMPQSAAGYVHRIGRTGRAYNTGASVSLVSPEENDMFEDIKSIIGESDNMDSNFIAPFPLLTKNAVEGLRYRAEDVARSVTKVAVRESRAQDLRNEILNSEKLKAHFQDNPRDLDLLKHDKLLSKKDPAPHLRDVPEYLLDPTTQEARKIVKLARAAM-GNNNTARRKGFKGKFRKSRDPLKTFSAEASRRPSKGGIRRRGPGCDAGHKRKRKET 624
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7P5W8 ((Dead box ATP-dependent RNA helicase {ECO:0000313|EMBL:GER28193.1}))
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 395/566 (69.79%), Postives = 465/566 (82.16%), Query Frame = 0
Match: A0A5A7P5W8 ((Dead box ATP-dependent RNA helicase {ECO:0000313|EMBL:GER28193.1}))
HSP 1 Score: 790.03 bits (2039), Expect = 0.000e+0
Identity = 395/566 (69.79%), Postives = 465/566 (82.16%), Query Frame = 0
Query: 28 LGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLFSEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNAVKKKSKRRAK--DTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGENGP-DSNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGKS-RNRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGK 589
LG+D+RLIRALSKK + KPTPIQ A+PLILEGKDVV RA TGSGKT AYLLP+LQKLF+E +K APA FI+VPTRELCQQVY+E MSLIELCRV LK +Q + +DL+ +LAG PDI+VSTP + CLK G+L K +Q+SLSVL+LDEADLLLS+G+ +DLKALT H+P++CQCLLMSAT S++VE L + +LHNPYILTL + G+ KD+I+ KN+QQ+YI CS+RDKLVHILALLKLELVQKKVLIF+N+IDMSFRLKLFLEQFGIKSAV N+ELP NSR HI+E F+AGLFDY+IA DD S E++ D + +A K+S+RR + D E GV RGIDFKNVHTV+NFDMPQ+A YVHRIGRTGRA+ G SVS+V+P+E +FEEI+ LLGENG DS IA F T+NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKL AHFQ+NPKDLDLLKHDK LSKK PAPHLRDVP YLLDPTTQEASKIVKL A M N +R++G +GKS ++RDPLK+FSA+G K S +GG KRKG D G+
Sbjct: 52 LGLDSRLIRALSKKSIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFAESPSKKNLAPAAFILVPTRELCQQVYSEVMSLIELCRVPLKTIQLKSMMSTSDLRTSLAGLPDIVVSTPACVQTCLKNGILNSKALQESLSVLILDEADLLLSYGYEDDLKALTAHVPKRCQCLLMSATSSDDVEKLKKLILHNPYILTLPEVGDVKDDIIPKNVQQFYISCSARDKLVHILALLKLELVQKKVLIFSNSIDMSFRLKLFLEQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADDSRSAEEQNDKES-HAPPKRSRRRKQKLDAEFGVVRGIDFKNVHTVVNFDMPQTAAGYVHRIGRTGRAYSTGASVSMVSPDEMEIFEEIKLLLGENGEQDSKFIAPFPLLTKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLMAHFQDNPKDLDLLKHDKILSKKEPAPHLRDVPDYLLDPTTQEASKIVKLARAAM-GNAKPSRQKGLKGKSNKSRDPLKTFSAKGPKRSHRGGSKRKGPKKDDGQ 615
BLAST of XM_017384092.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WRX2 ((DEAD-box ATP-dependent RNA helicase 16 {ECO:0000313|RefSeq:XP_009776985.1}))
HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 396/575 (68.87%), Postives = 468/575 (81.39%), Query Frame = 0
Match: A0A1U7WRX2 ((DEAD-box ATP-dependent RNA helicase 16 {ECO:0000313|RefSeq:XP_009776985.1}))
HSP 1 Score: 780.785 bits (2015), Expect = 0.000e+0
Identity = 396/575 (68.87%), Postives = 468/575 (81.39%), Query Frame = 0
Query: 28 LGVDARLIRALSKKGVNKPTPIQCSAVPLILEGKDVVTRAHTGSGKTFAYLLPVLQKLF-SEVSEQKKAAPAVFIVVPTRELCQQVYNEAMSLIELCRVQLKVVQFTTDAQINDLKVALAGRPDILVSTPGGILKCLKLGVLQGKQIQDSLSVLVLDEADLLLSFGHGNDLKALTVHIPRQCQCLLMSATISEEVETLARPLLHNPYILTLCDNGNEKDEIVSKNIQQYYIKCSSRDKLVHILALLKLELVQKKVLIFTNTIDMSFRLKLFLEQFGIKSAVFNSELPLNSRKHIIEGFSAGLFDYMIATDDGDSKEKEKDGDGDNA---VKKKSKRRAKDTEAGVARGIDFKNVHTVINFDMPQSAVRYVHRIGRTGRAHDLGESVSLVAPEEENVFEEIEALLGENGPD-SNPIAKFRFPTENAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQNNPKDLDLLKHDKPLSKKAPAPHLRDVPAYLLDPTTQEASKIVKLTSAVMRRNNNSARRRGSQGK-SRNRDPLKSFSAQGQKNSSKGGMKRKGTDGDSGKKSKTKHT 596
LGVD RLIRAL+KK + KPTPIQ A+PLILEGKDVV RA TGSGKTFAYLLP+LQKLF S+ K AP I+VPTRELCQQV +EA SLIELCRVQL++VQ T+ +++LK LAG P+I+VSTP I CLK GV+Q K +QDSLS+L+LDEADLLLS+G+ +DLKALT H+PR+CQCLLMSAT S +VE L + +LHNPYILTL + G+ KD+I+ KN+QQ+YI C++RDKLVHILALLKLELVQKKVLIFTN+IDMSFRLKLF EQFGIKSAV N+ELP +SR HI+E F+AGLFDY+IATD+ S+ KE+ D + + KK ++ D E GV RGIDFKNV+TVINF+MPQ+A YVHRIGRTGRA++ G SVSLV+ EE +FEEI++LLGEN S IA F ++NAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQ+NPKDLDLLKHDK LSKKAPAPHLRDVP YL+DPTTQEASKIVKL A M N N++R +GS+G+ R+RDPLK+FSA+ K + KGGMKRK D D+G K K KH+
Sbjct: 20 LGVDPRLIRALTKKSILKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTSQSPSTKNLAPTALILVPTRELCQQVCSEANSLIELCRVQLRLVQLTSSMSVSELKTTLAGPPEIVVSTPACIQTCLKNGVIQAKAVQDSLSILILDEADLLLSYGYEDDLKALTSHVPRRCQCLLMSATSSSDVEKLKKLILHNPYILTLPEVGDTKDDIIPKNVQQFYISCAARDKLVHILALLKLELVQKKVLIFTNSIDMSFRLKLFFEQFGIKSAVLNAELPQSSRLHILEEFNAGLFDYLIATDESQSEGKEQVDDQNGSERKKSKKHRKHKLDAEFGVVRGIDFKNVYTVINFEMPQTAAGYVHRIGRTGRAYNTGASVSLVSAEETEIFEEIKSLLGENEDKVSQFIAPFPLLSKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSEKLKAHFQDNPKDLDLLKHDKMLSKKAPAPHLRDVPDYLVDPTTQEASKIVKLARAAM-GNTNASRGKGSKGRFKRSRDPLKTFSAEAPKRAGKGGMKRKAKDTDNGHKYKKKHS 593
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BD55 | E-Value: 0.000e+0, PID: 69.77 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6680... [more] |
| A0A068U290 | E-Value: 0.000e+0, PID: 69.78 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0263... [more] |
| A0A5J5BUE2 | E-Value: 0.000e+0, PID: 70.05 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A7J7HZZ5 | E-Value: 0.000e+0, PID: 68.44 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5958... [more] |
| A0A6P6T6J9 | E-Value: 0.000e+0, PID: 69.26 | (LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA h... [more] |
| A0A2R6PAS4 | E-Value: 0.000e+0, PID: 70.61 | (DEAD-box ATP-dependent RNA helicase {ECO:0000313|... [more] |
| A0A6I9UDZ9 | E-Value: 0.000e+0, PID: 70.30 | (DEAD-box ATP-dependent RNA helicase 16 {ECO:00003... [more] |
| A0A6P6TDH2 | E-Value: 0.000e+0, PID: 69.95 | (DEAD-box ATP-dependent RNA helicase 16-like {ECO:... [more] |
| A0A5A7P5W8 | E-Value: 0.000e+0, PID: 69.79 | (Dead box ATP-dependent RNA helicase {ECO:0000313|... [more] |
| A0A1U7WRX2 | E-Value: 0.000e+0, PID: 68.87 | (DEAD-box ATP-dependent RNA helicase 16 {ECO:00003... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |