XM_017363766.1 | CarrotOmics

Resource Type:

Polypeptide

Name:

XM_017363766.1

Identifier:

XM_017363766.1-protein

Sequence:

MLLSTDIRWACSCTSGNFLTKYYNHGQSGGDRRIAEMKEQESQTAIEDVM
YMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMI
KEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMR
HRLELSLTDLNYDLRPNTGSRLSLSDFWSYGLNLAFGRVQNKHVTTVGEA
SCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEK
SGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN

Sequence Length:

297

Sequence Checksum:

dde2335c3ef80ad6d4612450efd8ef52

View location in JBrowse:

DCARv2_Chr1:50918634..50920997-

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, XM_017363766.1, derives from mRNA, XM_017363766.1.

Blast Results:

The following BLAST results are available for this feature:

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AGK6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55434.1}) (Fragment))

HSP 1 Score: 401.749 bits (1031), Expect = 1.532e-137
Identity = 191/269 (71.00%), Postives = 230/269 (85.50%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGS--RLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE+KE E Q ++EDV+YMLI YKFS+IRVHLVPRLS+CIYNGRLEI+P++DWELESIHS EVLEMI+E+L  V+GW+A+SNVT NWATT + ++ LCRVYAASILYGYFLKSA++RH L+LSL+++NYDL  ++GS   L LS+  S GL N+AFGR  +   T+VG+ SC+Q KK EKL  YVMGFDPE LQMCAKPKSKEA +L+EKH CALFGDEK+GL+E+DEVISTSL+S KR VLEAVAFGSFLWD+EEYVDS YKL +N
Sbjct:  151 RRIAELKEHECQASVEDVIYMLIFYKFSDIRVHLVPRLSRCIYNGRLEIWPARDWELESIHSFEVLEMIREYLTTVVGWKANSNVTENWATTAVRRIHLCRVYAASILYGYFLKSATLRHHLDLSLSEVNYDLGISSGSDTHLPLSELCSCGLKNIAFGRTSSVRSTSVGQESCSQGKKREKLRCYVMGFDPETLQMCAKPKSKEAADLVEKHICALFGDEKTGLLETDEVISTSLSSLKRMVLEAVAFGSFLWDAEEYVDSVYKLNEN 419

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AH65 ((Putative F21O3.2 protein {ECO:0000313|EMBL:MPA55435.1}))

HSP 1 Score: 400.979 bits (1029), Expect = 2.416e-137
Identity = 191/269 (71.00%), Postives = 229/269 (85.13%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGS--RLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE+KE E Q A+EDV+YMLI YKFS+IRVHLVPRLS+CIYNGRLEI+P++DWELESIHS EVLEMI+E+L  V+GW+A+SNVT NWATT + ++ LCRVYAASILYGYFLKSA++RH L+LSL+++NYDL  ++GS   L LS+  S GL N+AFGR  +   T+VG+ SC+Q K  EKL  YVMGFDPE LQMCAKPKSKEA +L+EKH CALFGDEK+GL+E+DEVISTSL+S KR VLEAVAFGSFLWD+EEYVDS YKL +N
Sbjct:  147 RRIAELKENECQAAVEDVIYMLIFYKFSDIRVHLVPRLSRCIYNGRLEIWPARDWELESIHSFEVLEMIREYLTTVVGWKANSNVTENWATTAVRRIHLCRVYAASILYGYFLKSATLRHHLDLSLSEVNYDLGISSGSDTHLPLSELCSCGLKNIAFGRTSSVRSTSVGQESCSQGKTREKLRCYVMGFDPETLQMCAKPKSKEAADLVEKHICALFGDEKTGLLETDEVISTSLSSLKRMVLEAVAFGSFLWDAEEYVDSVYKLNEN 415

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HPR6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5954649.1}))

HSP 1 Score: 398.282 bits (1022), Expect = 4.816e-135
Identity = 187/267 (70.04%), Postives = 225/267 (84.27%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            +RIAE++E E + A+EDVMYML+ +KFSEIRVHLVPRLS+CIYNGRLEI+PSKDWELESIH+ EVLEMI+EHL AVIGWRADSNVT+NWATT I +L+LC VYAASILYGYFLKS S+RH LELS+ + N DL     + L  S+ WS G+ N+AFGR+ N    +VG+ SC++ KK EKL  Y+MGFDPE LQM AKPK+KE +NL+EKHSCALFGDEK+GL+E++EVI TSL+S KR VLEAVAFGSFLWD+EEYVD+ YKLK+N
Sbjct:  238 QRIAELREHECEIAVEDVMYMLVLHKFSEIRVHLVPRLSRCIYNGRLEIWPSKDWELESIHNFEVLEMIREHLTAVIGWRADSNVTDNWATTQIPRLQLCGVYAASILYGYFLKSISLRHHLELSVAEANCDLGITFRNPLPQSELWSCGIKNIAFGRISNTQSISVGQDSCSRGKKREKLRRYIMGFDPETLQMRAKPKTKEVVNLVEKHSCALFGDEKTGLIETNEVILTSLSSLKRIVLEAVAFGSFLWDTEEYVDAVYKLKEN 504

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WPU8 ((Uncharacterized protein {ECO:0000313|EMBL:THG17817.1}))

HSP 1 Score: 394.045 bits (1011), Expect = 9.962e-135
Identity = 187/266 (70.30%), Postives = 224/266 (84.21%), Query Frame = 0

Query:   33 RIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RIAE++E E + A+EDVMYML+ +KFSEIRVHLVPRLS+CIYNGRLEI+PSKDWELESIH+ EVLEMI+EHL AVIGWRADSNVT+NWATT I +L+LC VYAASILYGYFLKS S+RH LELS+ + N DL     + L  S+ WS G+ N+AFGR+ N    +VG+ SC++ KK EKL  Y+MGFDPE LQM AKPK+KE +NL+EKHSCALFGDEK+GL+E++EVI TSL+S KR VLEAVAFGSFLWD+EEYVD+ YKLK+N
Sbjct:  144 RIAELREHECEIAVEDVMYMLVLHKFSEIRVHLVPRLSRCIYNGRLEIWPSKDWELESIHNFEVLEMIREHLTAVIGWRADSNVTDNWATTQIPRLQLCGVYAASILYGYFLKSISLRHHLELSVAEANCDLGITCRNPLPQSELWSCGIKNIAFGRISNTQSISVGQDSCSRGKKREKLRRYIMGFDPETLQMRAKPKTKEVVNLVEKHSCALFGDEKTGLIETNEVILTSLSSLKRIVLEAVAFGSFLWDTEEYVDAVYKLKEN 409

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PPF5 ((UV-B-induced protein {ECO:0000313|EMBL:PSR94951.1}))

HSP 1 Score: 387.882 bits (995), Expect = 3.376e-134
Identity = 182/267 (68.16%), Postives = 221/267 (82.77%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE++ QE Q AIEDVMYM++ +KF EI VHLVPRLS C+YNGRLEI+PS+DW+LES HS EVLEMI+EHL AVIGWR+DS+VT+NWATT I +L LC+VYAASILYGYFLKSAS+RH LEL+L + N+DL       L L + WS+GL + AFG V +   T+VG+ SC+Q  K+E+L  YVMGF+PE LQMCAKPK+KEA +LI KHSCALFGDEK+GL+E+DEVI TSL+S KR VLEAVAFGSFLWD+EEYV++ YKL +N
Sbjct:   12 RRIAELRGQECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCVYNGRLEIWPSRDWQLESFHSFEVLEMIREHLTAVIGWRSDSSVTDNWATTQIPRLHLCQVYAASILYGYFLKSASLRHHLELNLAEANHDLGMTYSKPLPLPELWSFGLKDTAFGYVSSTRSTSVGQESCSQGMKHEELRGYVMGFNPETLQMCAKPKTKEAASLIAKHSCALFGDEKTGLIETDEVIRTSLSSLKRMVLEAVAFGSFLWDTEEYVNTVYKLTEN 278

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GRA4 ((Phosphoserine aminotransferase, putative {ECO:0000313|EMBL:GFZ13337.1}))

HSP 1 Score: 388.652 bits (997), Expect = 8.357e-133
Identity = 183/266 (68.80%), Postives = 221/266 (83.08%), Query Frame = 0

Query:   33 RIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RIAE++ QE Q AIEDVMYM++ +KF EI VHLVPRLS C+YNGRLEI+PS+DW+LESIHS EVLEMI+EHL AVIGWR+DS+VT+NWATT I +L LC+VYAASILYGYFLKSAS+RH LEL+L   N+DL     + L L + WS+GL + AFG V +   T+VG+ SC+Q  K+E+L  YVMGF+PE LQMCAKPK+KEA +LI KHSCALFGDEK+GL+E+DEVI TSL+S KR VLEAVAFGSFLWD+EEYVD+ YKL +N
Sbjct:  126 RIAELRGQECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCVYNGRLEIWPSRDWQLESIHSFEVLEMIREHLTAVIGWRSDSSVTDNWATTQIPRLHLCQVYAASILYGYFLKSASLRHHLELNLAKANHDLGMTYSNPLPLPELWSFGLKDTAFGYVSSTRSTSVGQESCSQGMKHEELRGYVMGFNPETLQMCAKPKTKEAASLIAKHSCALFGDEKTGLIETDEVIQTSLSSLKRMVLEAVAFGSFLWDTEEYVDTVYKLTEN 391

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FM00 ((Phosphoserine aminotransferase, putative {ECO:0000313|EMBL:GFY99406.1}))

HSP 1 Score: 378.637 bits (971), Expect = 1.504e-130
Identity = 183/266 (68.80%), Postives = 215/266 (80.83%), Query Frame = 0

Query:   33 RIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RIAE++ +E Q AIEDVMYM++ +KF EI VHLVPRLS CIYNGRLEI+PS+DW+LESIHS EVLEMI+EHL AVIGWR+DS VT+NWA T I +L LCRVYAASILYGYFLKSAS+RH LEL+L + NYDL     + L L + WS GL + AFG V     T+VG+ SC+Q  K E+L  YVM FD E L+MCAKPK+KEA +LIEKHSCALFGDEK+GL+E+DEVI TSL S KR VLEAVAFGSFLWD+EEYVD+ YKL +N
Sbjct:   12 RIAELRGRECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCIYNGRLEIWPSRDWQLESIHSFEVLEMIREHLTAVIGWRSDSRVTDNWAKTQIPRLHLCRVYAASILYGYFLKSASLRHHLELNLAEANYDLGITYSNPLPLPELWSCGLKDNAFGYVSGTRSTSVGQESCSQGMKREELRGYVMRFDAETLRMCAKPKTKEAASLIEKHSCALFGDEKTGLIEADEVIRTSLLSLKRMVLEAVAFGSFLWDTEEYVDTVYKLTEN 277

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSM7 ((UV-B-induced protein {ECO:0000313|EMBL:PSS14109.1}))

HSP 1 Score: 379.793 bits (974), Expect = 2.264e-129
Identity = 180/267 (67.42%), Postives = 217/267 (81.27%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE++ +E Q AIEDVMYM++ +KF EI VHLVPRLS C+YNGRLEI+PS+DW+LESIHS EVLEMI+EHL AVIGWR+DS VT+NWA T I +L LCRVYAASILYGYFLKSAS+RH LEL+L + NYDL     + L L + W+ GL + AFG + +   T+VG+ SC+Q  K E+L  YVM FDPE L+MCAKPK+ EA +L+EKHSCALFGDEK+GL+E+DEVI TSL S KR VLEAVAFGSFLWD+EEYVD+ YKL +N
Sbjct:  125 RRIAELRGRECQVAIEDVMYMMVLHKFDEIGVHLVPRLSTCVYNGRLEIWPSRDWQLESIHSFEVLEMIREHLTAVIGWRSDSRVTDNWAKTQIPRLHLCRVYAASILYGYFLKSASLRHHLELNLAEANYDLGITYSNPLPLPELWACGLKDNAFGYINSTRSTSVGQESCSQGMKREELRGYVMRFDPETLRMCAKPKTMEAASLLEKHSCALFGDEKTGLIETDEVIRTSLLSLKRMVLEAVAFGSFLWDTEEYVDTVYKLTEN 391

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438I820 ((UV-B-induced protein, chloroplastic {ECO:0000313|EMBL:RVW92807.1}))

HSP 1 Score: 364.385 bits (934), Expect = 8.684e-125
Identity = 180/268 (67.16%), Postives = 218/268 (81.34%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGL-NLAFGRVQNKHVTTVGEASCNQVKKNE-KLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE+KE+E Q A+EDVMY+LI YKFSEIRVHLVPRLS+CIYNGRLEI+P++DW LE IH+ EVLEMIKEHL  V+GW+  SNVT NWATT I + +L ++YAASILYGYFLKSAS+RH LE+SL   ++DL P++    ++S FWSYGL +L  G   +   T++GEAS  Q +K E KL  YVMGFDP+ LQ CAK KSKEA+NL+EKHSCALFGDEK+GL+E+D+VISTS +S KR VLEAVAFGSFLWD+EEYV S Y LK+N
Sbjct:   24 RRIAELKERECQIAVEDVMYLLIFYKFSEIRVHLVPRLSRCIYNGRLEIWPARDWALECIHNFEVLEMIKEHLTTVLGWKPKSNVTENWATTQIRRFQLGQIYAASILYGYFLKSASLRHHLEMSLVHTHHDL-PSS----NVSGFWSYGLKDLFLGPNCSSQPTSLGEASSRQEEKEEKKLRCYVMGFDPDTLQRCAKLKSKEAVNLVEKHSCALFGDEKTGLLETDDVISTSFSSMKRLVLEAVAFGSFLWDTEEYVGSVYNLKEN 286

[Close]

BLAST of XM_017363766.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UT89 ((UV-B-induced protein At3g17800, chloroplastic {ECO:0000313|RefSeq:XP_027092917.1}))

HSP 1 Score: 367.081 bits (941), Expect = 2.733e-124
Identity = 175/267 (65.54%), Postives = 213/267 (79.78%), Query Frame = 0

Query:   32 RRIAEMKEQESQTAIEDVMYMLISYKFSEIRVHLVPRLSQCIYNGRLEIYPSKDWELESIHSLEVLEMIKEHLGAVIGWRADSNVTNNWATTNISKLRLCRVYAASILYGYFLKSASMRHRLELSLTDLNYDLRPNTGSRLSLSDFWSYGLNLA-FGRVQNKHVTTVGEASCNQVKKNEKLSSYVMGFDPEVLQMCAKPKSKEAMNLIEKHSCALFGDEKSGLVESDEVISTSLASQKRFVLEAVAFGSFLWDSEEYVDSAYKLKQN 297
            RRIAE+KE E Q AIED MY+LI  KF EIRVHLVP+LS+C+YNGRLEI PSKDWELESIHS EVLEMI+EHL   +GWRA+S+VT+ WA T IS+L+LC+VY AS+LYGYFLK+AS+RH LE +L  +N+DL  N GS   ++D W+ G   A FGRV +   T+V E S NQ  K +KL  YVMGFDPE LQMCAKPKSKEA NLIE+ S ALFGDEK+GL+E++EVISTS AS KR+VLEA+AFGS+LWD+EEY+ +  +L+ N
Sbjct:  134 RRIAELKEHECQAAIEDAMYVLICSKFYEIRVHLVPQLSKCMYNGRLEILPSKDWELESIHSFEVLEMIREHLTTFVGWRANSSVTDKWAVTQISRLQLCQVYTASVLYGYFLKAASLRHTLEKNLLHMNFDLGLNVGSHFPVADMWALGSKAAMFGRVLSTRSTSVSEVSSNQANKGDKLRCYVMGFDPESLQMCAKPKSKEAANLIERQSFALFGDEKTGLLETNEVISTSFASLKRYVLEAIAFGSYLWDAEEYISTICELEDN 400


Match Name	Stats	Description
A0A5B7AGK6	E-Value: 1.532e-137, PID: 71.00	(Uncharacterized protein {ECO:0000313\|EMBL:MPA5543... [more]
A0A5B7AH65	E-Value: 2.416e-137, PID: 71.00	(Putative F21O3.2 protein {ECO:0000313\|EMBL:MPA554... [more]
A0A7J7HPR6	E-Value: 4.816e-135, PID: 70.04	(Uncharacterized protein {ECO:0000313\|EMBL:KAF5954... [more]
A0A4V3WPU8	E-Value: 9.962e-135, PID: 70.30	(Uncharacterized protein {ECO:0000313\|EMBL:THG1781... [more]
A0A2R6PPF5	E-Value: 3.376e-134, PID: 68.16	(UV-B-induced protein {ECO:0000313\|EMBL:PSR94951.1... [more]
A0A7J0GRA4	E-Value: 8.357e-133, PID: 68.80	(Phosphoserine aminotransferase, putative {ECO:000... [more]
A0A7J0FM00	E-Value: 1.504e-130, PID: 68.80	(Phosphoserine aminotransferase, putative {ECO:000... [more]
A0A2R6QSM7	E-Value: 2.264e-129, PID: 67.42	(UV-B-induced protein {ECO:0000313\|EMBL:PSS14109.1... [more]
A0A438I820	E-Value: 8.684e-125, PID: 67.16	(UV-B-induced protein, chloroplastic {ECO:0000313\|... [more]
A0A6P6UT89	E-Value: 2.733e-124, PID: 65.54	(UV-B-induced protein At3g17800, chloroplastic {EC... [more]

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.