XM_017374629.1

Resource Type: 
Polypeptide
Name: 
XM_017374629.1
Identifier: 
XM_017374629.1-protein
Sequence: 
MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGL
EKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEK
RDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDN
SKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEE
IPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLME
CLRLLLATLDMGSFSYVISDVKERAKAIAEEWQPKLVDLDLDASNGNSLE
AHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPG
VIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSA
NASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAK
ADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVY
DRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH
Sequence Length: 
545
Sequence Checksum: 
aad636fad7f24931a939ba59b3cfece4
View location in JBrowse: 
DCARv2_Chr1:51149084..51151985-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017374629.1, derives from mRNA, XM_017374629.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A4C6 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 848.581 bits (2191), Expect = 0.000e+0
Identity = 408/546 (74.73%), Postives = 470/546 (86.08%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELESHRA+TLN+KW+QLEEHFHGLEKSLKRRFN+LEGQE+EYK KT+ ARE L KREA ++AKEQASL  LQEKRDAA  AI +      K   +EP  +T++ Q G+ LVEEKPPD MA++ N + MK  ++N NVE  S PQLV+LCQ  DSEGLHKFIS+NRKNLA ++EEIP+AL A+ADPA LVLDSL+GFYS++   LDGKKDS LLGLRRTCIMLMEC  +LL  LD+G  S VIS DVKERAKAIAEEW+PKL +LD+DASNGNSLEAHAFLQL+ATFGI+SD+DQE LSK+IPMVSRR+QTADLCR LGLS++MPGVIDVLV+NGRQIDAVNLAF+FELTE+YSP+SLL+SYLTEA++ +SP KS N SP VQ EVNEREL ALKAVIKCIEDH+LE+QYP+DPLQK+V QLEKAKADKKRATEVAKP PKRPRANG G  PR  NVA ++NFY RMTDRY QY+YDRPY Y GPTDNHI S+LG A+YNLSP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIQQLQKAFAELESHRAITLNLKWKQLEEHFHGLEKSLKRRFNELEGQEKEYKTKTMEAREILEKREAAVMAKEQASLETLQEKRDAAFSAIVNALEKHGKLFSVEPAVITSEGQGGVPLVEEKPPDAMAAESNLEDMKNSSENGNVEVNSNPQLVKLCQEMDSEGLHKFISDNRKNLATLREEIPLALKAAADPACLVLDSLKGFYSMEVPSLDGKKDSNLLGLRRTCIMLMECFSILLTNLDLGPVSDVISEDVKERAKAIAEEWKPKLDNLDVDASNGNSLEAHAFLQLLATFGINSDFDQEDLSKLIPMVSRRRQTADLCRFLGLSDKMPGVIDVLVNNGRQIDAVNLAFAFELTEQYSPISLLKSYLTEARKVSSPVKSGNTSP-VQNEVNERELTALKAVIKCIEDHKLEEQYPLDPLQKRVQQLEKAKADKKRATEVAKPLPKRPRANGVGYGPRVTNVATDKNFYARMTDRYTQYMYDRPYVYPGPTDNHIPSLLGSAAYNLSPSHGNYFGNGYQYQAPYLH 545
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A5R8 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0
Identity = 407/549 (74.13%), Postives = 474/549 (86.34%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCI-EPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRA--NGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELES+RA+TLN+KW+QLEEHFHGLEKSLKRRFNDLE QE+EY+ KT++A+E L KREA ++AKEQASL RLQEKRDA V AI++    KHKK    EPT VT++ Q G   +EEKPPD+MA++ N + +K  ++N  VE +SYPQLV+LCQ  DSEG+HKFIS+NRKNLAAI+EEIPIA  A+ADPA LVLDSL+GFY ++   LDGKKDS LLGLRRTCIMLMECL +LL  LD+ S S VIS DVKERAK IAEEW+P+L DLD+DA+NGNSLEAHAFLQL+ATFGI+SD+DQE LSK+IPMVSRR+QTADLCR LGLS++MPGVIDVLV+NGRQIDAVNLAF+FELTE++SPVSLL+SYLTEA++ +SP KS N SPTVQ E NEREL ALKAVIKCIEDH+LE+QY  DPLQK+V QLEK KADKKRATEVAKPQPKRPRA  NG G  PR  NVA ++NFY RMTDRYPQY+YDRPY YTGPTDNH+ S+LG A+YNLSP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIQQLQKAFAELESYRAITLNLKWKQLEEHFHGLEKSLKRRFNDLEDQEKEYETKTMKAQEMLEKREAAVMAKEQASLERLQEKRDAVVSAIAN-AIEKHKKLFPDEPTVVTSEGQVGAPFMEEKPPDVMAAESNLEDIKNSSENGYVEVKSYPQLVKLCQEMDSEGIHKFISDNRKNLAAIREEIPIAFKAAADPACLVLDSLKGFYRMEVPNLDGKKDSNLLGLRRTCIMLMECLSILLTNLDLSSVSDVISEDVKERAKTIAEEWKPRLDDLDVDANNGNSLEAHAFLQLLATFGINSDFDQEDLSKLIPMVSRRRQTADLCRFLGLSDKMPGVIDVLVNNGRQIDAVNLAFAFELTEQFSPVSLLKSYLTEARKVSSPVKSGNTSPTVQNEFNERELTALKAVIKCIEDHKLEEQYSPDPLQKRVQQLEKVKADKKRATEVAKPQPKRPRASPNGVGYGPRVTNVATDKNFYARMTDRYPQYIYDRPYVYTGPTDNHLPSLLGSATYNLSPSHGNYFGNGYQYQAPYLH 548
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D334 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 841.647 bits (2173), Expect = 0.000e+0
Identity = 404/547 (73.86%), Postives = 475/547 (86.84%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVISD-VKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANG-TGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATL++STT+KIQQLQKAFAELESHRA+TLN+KW+QLEEHFHGLEKSLKRRF +LE QE+E++ KT++ARE L KREA ++AKE ASL RLQEKRDAAV+AI++      K   +EP   ++++Q G   VEEKPPD MA++ N + MKK+++N NV   + PQLV+LCQ  DSEGLHKFIS+NRKNLA IKEEIPIAL A+ADPA+LVLDSL+GFYS++ + +DGKKDS LLGLRRTCIMLMECL +LL  LD+ S S +IS+ VKERAKAIAEEW+PKL DLD DA+NGNSLEAHAFLQL+ATFGI SD+D E LSK+IPMVSRR+QTADLCRSLGLSE+MPGVI+VLVSNGRQIDAVNLAF+F LTE++SPVSLL+SYLTEAK+ +SPSKS N SPTVQ EVNEREL ALKAVIKCIEDH+LE+QYP+DPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANG  G  PR  NVAA++NFYPR+TDRYPQY+YDRPY Y GPTDNH+ SV+G  +Y +SP HGN+F NG+QYQAPYLH
Sbjct:  151 MEDTQSVATLVDSTTSKIQQLQKAFAELESHRAITLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEFETKTMKAREMLKKREAAVMAKEHASLERLQEKRDAAVFAITNALQKHRKVSSVEPAVDSSEDQGGAPFVEEKPPDSMAAESNFEDMKKYSENQNVVVNN-PQLVKLCQEMDSEGLHKFISDNRKNLATIKEEIPIALKAAADPASLVLDSLKGFYSMEVSNMDGKKDSNLLGLRRTCIMLMECLSILLTNLDLSSVSNLISEKVKERAKAIAEEWKPKLDDLDADANNGNSLEAHAFLQLLATFGIDSDFDHEDLSKLIPMVSRRRQTADLCRSLGLSEKMPGVINVLVSNGRQIDAVNLAFAFGLTEQFSPVSLLKSYLTEAKKVSSPSKSGNTSPTVQNEVNERELTALKAVIKCIEDHKLEQQYPMDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGVVGHGPRFTNVAADKNFYPRVTDRYPQYIYDRPYVYPGPTDNHVPSVMGSPAY-MSPVHGNFFGNGFQYQAPYLH 695
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A8Z9 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 841.647 bits (2173), Expect = 0.000e+0
Identity = 407/547 (74.41%), Postives = 474/547 (86.65%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCI-EPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELES+RA+TLN+KW+QLEEHFHGLEKSLKRRFNDLE QE+EY+ KT++A+E L KREA ++AKEQASL RLQEKRDA V AI++    KHKK    EPT VT++ Q G   +EEKPPD+MA++ N + +K  ++N  VE +SYPQLV+LCQ  DSEG+HKFIS+NRKNLAAI+EEIPIA  A+ADPA LVLDSL+GFY ++   LDGKKDS LLGLRRTCIMLMECL +LL  LD+ S S VIS DVKERAK IAEEW+P+L DLD+DA+NGNSLEAHAFLQL+ATFGI+SD+DQE LSK+IPMVSRR+QTADLCR LGLS++MPGVIDVLV+NGRQIDAVNLAF+FELTE+YSP+SLL+SYLTEA++ +SP KS N SP VQ EVNEREL ALKAVIKCIEDH+LE+QYP+DPLQK+V QLEKAKADKKRATEVAKP PKRPRANG G  PR  NVA ++NFY RMTDRY QY+YDRPY Y GPTDNHI S+LG A+YNLSP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIQQLQKAFAELESYRAITLNLKWKQLEEHFHGLEKSLKRRFNDLEDQEKEYETKTMKAQEMLEKREAAVMAKEQASLERLQEKRDAVVSAIAN-AIEKHKKLFPDEPTVVTSEGQVGAPFMEEKPPDVMAAESNLEDIKNSSENGYVEVKSYPQLVKLCQEMDSEGIHKFISDNRKNLAAIREEIPIAFKAAADPACLVLDSLKGFYRMEVPNLDGKKDSNLLGLRRTCIMLMECLSILLTNLDLSSVSDVISEDVKERAKTIAEEWKPRLDDLDVDANNGNSLEAHAFLQLLATFGINSDFDQEDLSKLIPMVSRRRQTADLCRFLGLSDKMPGVIDVLVNNGRQIDAVNLAFAFELTEQYSPISLLKSYLTEARKVSSPVKSGNTSP-VQNEVNERELTALKAVIKCIEDHKLEEQYPLDPLQKRVQQLEKAKADKKRATEVAKPLPKRPRANGVGYGPRVTNVATDKNFYARMTDRYTQYMYDRPYVYPGPTDNHIPSLLGSAAYNLSPSHGNYFGNGYQYQAPYLH 545
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061DLP5 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 392/546 (71.79%), Postives = 462/546 (84.62%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELESHRA+TLNMKW++LEEHFHGLEKSLKRRF++LE QE+E++ KT +ARE L KREA ++AKEQASL RLQEKRDAAV+AI++      K    EP  V+     G L VEEKPPD +AS+ N + +K   +N N E +SYPQLV+LC+  DSEGLHKFIS+NRKNLAA+KEEIP AL A+A PA LVL+SL+GFY  +   +DGKKDS LLGLRRTCIMLMECL  LL+ LD+ S   VIS D+KE+AK+IAEEW+PKL  LD+DASNGNSLEAHAFLQL++TFGI+SD+++E LS++IPMVSRR+QTADLCRSLGLSE+MPGVI+VLV+NGRQIDAVNLAF+FELTE++SPV LL+SYL EA++ +SP K  NASP+ QTEVNEREL ALKAVIKCIE+H LE+QYPIDPLQK+VL LEKAKADKKRATE AKPQPKRPRANG G  PR  N AA++ FYPR+TDRYPQYVYDRPY YTGP DNH  S+LG A+YN SP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIQQLQKAFAELESHRAITLNMKWKELEEHFHGLEKSLKRRFHELEDQEKEFETKTRKAREILQKREAAVVAKEQASLLRLQEKRDAAVFAITNSLEKHRKLSSEEPADVSCDGDSGELSVEEKPPDSVASESNLEDIKSSFENGNFEVKSYPQLVKLCEEMDSEGLHKFISDNRKNLAALKEEIPWALKAAASPACLVLESLEGFYLSEVPNVDGKKDSNLLGLRRTCIMLMECLSFLLSNLDVVSVCAVISEDIKEQAKSIAEEWKPKLDSLDIDASNGNSLEAHAFLQLLSTFGIASDFNEEELSRLIPMVSRRRQTADLCRSLGLSEKMPGVIEVLVNNGRQIDAVNLAFAFELTEQFSPVPLLKSYLKEARKASSPVKPGNASPSAQTEVNERELTALKAVIKCIEEHNLEEQYPIDPLQKRVLLLEKAKADKKRATEAAKPQPKRPRANGAGYGPRVTNGAADKAFYPRVTDRYPQYVYDRPYVYTGPADNHGPSLLGSATYNFSPSHGNYFGNGYQYQAPYLH 546
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J0ZHW3 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 391/546 (71.61%), Postives = 461/546 (84.43%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELESHRA+TLNMKW++LEEHFHGLEKSLKRRF++LE QE+E++ KT +ARE L KREA ++AKEQASL RLQEKRDAAV+AI++      K    EP  V+     G L VEEKPPD + S+ N + +K   +N N E +SYPQLV+LC+  DSEGLHKFIS+NRKNLAA+KEEIP AL A+A PA LVL+SL+GFY  +   +DGKKDS LLGLRRTCIMLMECL  LL+ LD+ S   VIS D+KE+AK+IAEEW+PKL  LD+DASNGNSLEAHAFLQL++TFGI+SD+++E LS++IPMVSRR+QTADLCRSLGLSE+M GVI+VLV+NGRQIDAVNLAF+FELTE++SPV LL+SYL EA++ +SP K  NASP+ QTEVNEREL ALKAVIKCIE+H LE+QYPIDPLQK+VL LEKAKADKKRATE AKPQPKRPRANG G  PR  NVAA++ FYPR+TDRYPQYVYDRPY YTGP DNH  S+LG A+YN SP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIQQLQKAFAELESHRAITLNMKWKELEEHFHGLEKSLKRRFHELEDQEKEFETKTRKAREMLQKREAAVVAKEQASLFRLQEKRDAAVFAITNALEKHRKLSSEEPADVSCDGDSGELSVEEKPPDSVPSESNLEDIKSSFENGNFEVKSYPQLVKLCEEMDSEGLHKFISDNRKNLAALKEEIPWALKAAASPACLVLESLEGFYLSEVPNVDGKKDSNLLGLRRTCIMLMECLSFLLSNLDVVSVCAVISEDIKEQAKSIAEEWKPKLDALDIDASNGNSLEAHAFLQLLSTFGIASDFNEEELSRLIPMVSRRRQTADLCRSLGLSEKMTGVIEVLVNNGRQIDAVNLAFAFELTEQFSPVPLLKSYLKEARKASSPVKPGNASPSAQTEVNERELTALKAVIKCIEEHNLEEQYPIDPLQKRVLLLEKAKADKKRATEAAKPQPKRPRANGAGYGPRVTNVAADKAFYPRITDRYPQYVYDRPYVYTGPADNHGPSLLGSATYNFSPSHGNYFGNGYQYQAPYLH 546
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0GRC6 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 385/549 (70.13%), Postives = 459/549 (83.61%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQY---QAPYLH 545
            ME+T+SVATLI+STT+KI++LQKAF ELESHRA+TLN+KW+QLEEHFHGLEKSLKRRF +LE QE+EY+ KT+ A E L KREAD++AKEQASL RLQEKRDAAV AI++      K    EP  +T +NQ G   VEEKPPD+MA++ N   MKK ++   VE   YPQLV LC+A DSEGLHKFIS+NRKNLA+I+EEIP+AL A+ DPA+LVLDSL GFY ++ + LDGKKDS LLGLRRTCIMLMECL +LLA LD  S S++IS +V+E+AKA+ EEW+PKL +LD+DA+NGNSLEAHAFLQL++TFGI SD+DQE LSK+IPMVSRR+QTADLCR LGLS++MPGVI+VLV+NGRQIDAVNLAF FELTE++SPV+LL+SYL EAK+ +SP K  N SP+VQ EV+EREL ALKAVIKC+EDH+LE  YP+DPLQK+VLQLEKAKADKKRA EVAKPQPKRPRANG G  PR  N AA++NFY RMTDRY QY+YDRPY Y GPTDNH+ S+LG A Y + P HGN+F NG+QY   QAPYLH
Sbjct:    1 MEDTQSVATLIDSTTSKIKELQKAFTELESHRAITLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEYETKTMEAWEMLEKREADVMAKEQASLERLQEKRDAAVSAIANAFQKHRKISSGEPAAITNENQGGSPSVEEKPPDMMAAESNLDDMKKTSEKECVEVMCYPQLVNLCRAMDSEGLHKFISDNRKNLASIREEIPLALKAATDPASLVLDSLNGFYCMEVSDLDGKKDSNLLGLRRTCIMLMECLSILLANLDHSSVSHIISENVREQAKAVVEEWKPKLDNLDMDANNGNSLEAHAFLQLLSTFGIDSDFDQEDLSKLIPMVSRRRQTADLCRFLGLSDKMPGVINVLVNNGRQIDAVNLAFEFELTEQFSPVTLLKSYLNEAKKVSSPVKKGNTSPSVQNEVSERELTALKAVIKCVEDHKLEALYPLDPLQKRVLQLEKAKADKKRAPEVAKPQPKRPRANGVGHGPRVTNAAADKNFYARMTDRYSQYMYDRPYVYPGPTDNHVPSLLGSAGYAMPPGHGNFFRNGFQYQAVQAPYLH 549
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C585 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 397/547 (72.58%), Postives = 462/547 (84.46%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPC-IEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVA LI+STT+KIQQLQKAFAELESHRAV LN+KW+QLEEHFHGLEKSLKRRFN+LE QE+EY+ KT+ ARE L KREA +IAKEQASL  LQEKRDAA +++ +    KH+    +EP  +T++ Q G   VEEKPPD MA++ N + +K   +N NVE +SYPQLV+LCQ  DSEGLHKFIS+NRKNLA ++EEIP+AL A+ADPA LVLDSL+GFYS++         S LLGLRRTCIMLMECL  LL  LD+GS S VIS DVKERAK IAEEW+PKL DLD+DASNGNSLEAHAFLQL+ATFGI+SD+DQE LSK+IPMVSRR+QTADLCRSLGLS++MPGVIDVLV+NGRQIDAVNLA +FEL E++SPVSLL+SYLTEA++ +SP KS N SPTVQ EVNEREL ALKAVIKCIEDH+LE+QY  +PLQK+V  LEKAKADKKR TEVAKPQ KRPRANG G  PR  NVA ++N+YPRMTDRYPQY+YDRPY YTGPTDNH+ S+LG A+YNLSP+HGNYF NGYQYQAPYLH
Sbjct:    1 MEDTQSVAMLIDSTTSKIQQLQKAFAELESHRAVALNLKWKQLEEHFHGLEKSLKRRFNELEDQEKEYETKTMEAREMLEKREAAVIAKEQASLETLQEKRDAA-FSVIANALEKHRTFFPVEPAVITSEGQGGAPFVEEKPPDAMAAESNLEEVKNSFENGNVEVKSYPQLVKLCQEMDSEGLHKFISDNRKNLATLREEIPLALKAAADPACLVLDSLKGFYSMEMPH------SNLLGLRRTCIMLMECLSSLLTDLDLGSVSDVISEDVKERAKVIAEEWKPKLDDLDVDASNGNSLEAHAFLQLLATFGINSDFDQEKLSKLIPMVSRRRQTADLCRSLGLSDKMPGVIDVLVNNGRQIDAVNLASAFELMEQFSPVSLLKSYLTEARKVSSPVKSGNTSPTVQNEVNERELTALKAVIKCIEDHKLEEQYSREPLQKRVQLLEKAKADKKRGTEVAKPQSKRPRANGVGYGPRVTNVATDKNYYPRMTDRYPQYIYDRPYVYTGPTDNHMPSLLGSATYNLSPSHGNYFGNGYQYQAPYLH 540
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P6L9 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012} (Fragment))

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 383/547 (70.02%), Postives = 463/547 (84.64%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCI-EPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATLI+STT+KIQQLQKAFAELESHRAVTLN+KW+QLEEHFHGLEKSLKRRF +LE QE+EY+ KT++ARE L KREA ++AKE  SL RLQEKR+AAV AI++    KH+K    EP  V++++Q G  +VEEKPPD M +++N K M+K++ N   E ++YPQLV+LCQ  +SEGLHKFIS+NRK+LA ++EEIP AL A+ DPA+L+LDSL+GFYS++ + LDGKKD  LLGLRRTCIMLMECL +LL  LD    S VI+ ++KERAKAIAE+W+PKL DLD+DASNGNSLEAHAFLQL+ATFGI SD+DQ  LSK+IPMVSRR+QTADLCRSLGLSE+MPGVI+VLV+NGRQIDAVNLAF+FELTE++SP+SLL+SYLTEA++ +S  KS N S TVQ EVNEREL ALKAVIKCIEDH+LE+QYP+DPLQK VLQLEK KAD KRATEVAKPQPKRPRANG G  PR  N +A++NFY R+TDRYPQY+YD+PY Y G TD H+ S+LG A+Y + P HGN+F NG+QYQA YLH
Sbjct:    5 MEDTQSVATLIDSTTSKIQQLQKAFAELESHRAVTLNLKWKQLEEHFHGLEKSLKRRFTELEDQEKEYETKTMKAREMLEKREAAVMAKEHTSLERLQEKRNAAVSAIAN-AFQKHRKVSFPEPVVVSSEDQGGAPIVEEKPPDAMTTENNFKDMRKYSANEIPEVKAYPQLVKLCQEMNSEGLHKFISDNRKSLATVREEIPTALKAAGDPASLILDSLKGFYSLEVSNLDGKKDPNLLGLRRTCIMLMECLSVLLTNLDPSFVSNVITGNIKERAKAIAEDWKPKLDDLDVDASNGNSLEAHAFLQLLATFGIDSDFDQVDLSKLIPMVSRRRQTADLCRSLGLSEKMPGVINVLVNNGRQIDAVNLAFAFELTEQFSPLSLLKSYLTEARKNSSAVKSGNTSSTVQNEVNERELTALKAVIKCIEDHKLEEQYPVDPLQKLVLQLEKVKADSKRATEVAKPQPKRPRANGVGHAPRVTNFSADKNFYARVTDRYPQYIYDKPYVYHGHTDAHVPSLLGSATYTVPPGHGNFFGNGFQYQATYLH 550
[Close]
BLAST of XM_017374629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FSX3 (FRIGIDA-like protein {ECO:0000256|RuleBase:RU364012})

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 383/546 (70.15%), Postives = 459/546 (84.07%), Query Frame = 0
 
Query:    1 MEETRSVATLIESTTTKIQQLQKAFAELESHRAVTLNMKWQQLEEHFHGLEKSLKRRFNDLEGQEQEYKNKTLRARETLVKREADIIAKEQASLNRLQEKRDAAVYAISSKTTAKHKKPCIEPTFVTTKNQCGILLVEEKPPDIMASQDNSKSMKKFTQNVNVEGQSYPQLVRLCQANDSEGLHKFISENRKNLAAIKEEIPIALSASADPANLVLDSLQGFYSIQGAQLDGKKDSYLLGLRRTCIMLMECLRLLLATLDMGSFSYVIS-DVKERAKAIAEEWQPKLVDLDLDASNGNSLEAHAFLQLIATFGISSDYDQEVLSKMIPMVSRRQQTADLCRSLGLSERMPGVIDVLVSNGRQIDAVNLAFSFELTEKYSPVSLLESYLTEAKQTTSPSKSANASPTVQTEVNERELAALKAVIKCIEDHRLEKQYPIDPLQKQVLQLEKAKADKKRATEVAKPQPKRPRANGTGSVPRTANVAAERNFYPRMTDRYPQYVYDRPYAYTGPTDNHIQSVLGPASYNLSPAHGNYFANGYQYQAPYLH 545
            ME+T+SVATL+ STT+KIQQLQKAFAELES+RAVTLN+KW+QLEEHFHGLEKSLKRR+ +LE QE+EY+ KT+RARE L KREA ++AKE  SL RLQEKRDAAV AI++      K    EP  V+ ++Q G  +VEEKPPD M +++N + M+K+  N   E ++YPQLV+LCQ  DSEGLHKFIS+NRK+L AI+EEIP AL AS DPA+L+LDSL+GFYS++ + +DGKKD  LLGLRRTCIMLMECL +LL  LD    S VI+ ++KERAKAIAE+W+PKL DLD+DA+NGNSLEAHAFLQL+ATFGI SD+DQ  LSK+IPMVSRR+QTADLCRSLGLSE+MPGVI+VLV+NGRQIDAVNLAF+FELTE++SPVSLL+SYLTEA++ +SP KS N SPTVQ EVNEREL ALKAVIKCIEDH+LE+QYP+DPLQK VLQLEK KADKKRATEVAKPQPKRPRANG G  PR  N  A++NFY R+TDRYPQY+YD+PY Y G TD H+ S+LG A+Y + P+HG +F NG+QYQA YLH
Sbjct:    1 MEDTQSVATLMNSTTSKIQQLQKAFAELESYRAVTLNLKWKQLEEHFHGLEKSLKRRYTELEDQEKEYETKTMRAREMLEKREAAVMAKECTSLERLQEKRDAAVSAIANAVQKHRKVSFPEPAVVSREDQGGAPIVEEKPPDAMTAENNFEGMRKYFANEIPEVKAYPQLVKLCQEMDSEGLHKFISDNRKSLTAIREEIPTALKASGDPASLILDSLRGFYSMEVSNMDGKKDPNLLGLRRTCIMLMECLSILLTNLDPCFVSNVITGNIKERAKAIAEDWKPKLDDLDVDANNGNSLEAHAFLQLLATFGIDSDFDQVDLSKLIPMVSRRRQTADLCRSLGLSEKMPGVINVLVNNGRQIDAVNLAFAFELTEQFSPVSLLKSYLTEARKNSSPVKSGNTSPTVQNEVNERELTALKAVIKCIEDHKLEEQYPVDPLQKLVLQLEKVKADKKRATEVAKPQPKRPRANGVGHAPRVTNFVADKNFYARVTDRYPQYIYDKPYVYHGHTDAHVPSLLGSAAYTVPPSHGKFFGNGFQYQATYLH 546
Match NameStatsDescription
A0A5B7A4C6E-Value: 0.000e+0, PID: 74.73FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A5B7A5R8E-Value: 0.000e+0, PID: 74.13FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A4S4D334E-Value: 0.000e+0, PID: 73.86FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A5B7A8Z9E-Value: 0.000e+0, PID: 74.41FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A061DLP5E-Value: 0.000e+0, PID: 71.79FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A6J0ZHW3E-Value: 0.000e+0, PID: 71.61FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A7J0GRC6E-Value: 0.000e+0, PID: 70.13FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A5J5C585E-Value: 0.000e+0, PID: 72.58FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A2R6P6L9E-Value: 0.000e+0, PID: 70.02FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
A0A7J0FSX3E-Value: 0.000e+0, PID: 70.15FRIGIDA-like protein {ECO:0000256|RuleBase:RU36401... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.