Resource Type:
Polypeptide
Name:
XM_017380060.1
Identifier:
XM_017380060.1-protein
Sequence:
MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHS
EQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQ
PLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAE
KVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFV
SAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLL
AAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRM
LFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPR
VSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMW
LRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQ
EMRTVDTSKHSNPSAMQFQQTQGITNRMLQHNQMLQQSQPEASFLYSGGE
NQSQAQSQSHLQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDD
QKVSGVGSLVTQFASQVQSPSLDKFTSLQQQSFSDSNGNPVTSPVASPLH
NFTGLFPQDEDSQLNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQ
LQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTS
LLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCID
ETNFLQSHENLVQKDTPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAH
MFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSP
QEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLD
Y
Sequence Length:
901
Sequence Checksum:
d941155c445829efd8fc4284e1b85cec
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017380060.1, derives from mRNA, XM_017380060.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B9D2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1364.75 bits (3531), Expect = 0.000e+0
Identity = 706/909 (77.67%), Postives = 779/909 (85.70%), Query Frame = 0
Match: A0A5B7B9D2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1364.75 bits (3531), Expect = 0.000e+0
Identity = 706/909 (77.67%), Postives = 779/909 (85.70%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNR--MLQHNQMLQQSQPEASFLYSGGENQSQAQS-QSHLQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSSA F +QSPEGE+ CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNE NQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKY KAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGI+D+ LGMNSPLMWLRG+NG + QSLNFQG+GV+PWMQPR+DA MLGM DIYQA+AAAALQ+MR VD SK + PS +QFQQ+Q + NR L QMLQQSQP+ +F+ S E QSQAQ+ LQQQLQHQ+SF+NQ ++ Q QQ +VD Q+VS V S ++QF +SQ QSPSL +S+ QQQ+ S SNGNP T P+ SPLH+ G F QDE + LN RS LL+SAGWPPKRVA+DPLL SG SQ LPQ+ QLG+ + N SQ+A L P+ GR+CSIDQ G ND LLFG NIDS+SLL+QNG+S L GVGSD +ST++PF+SSNY+S G DFSLNP++T SSCIDE+ FLQS EN+ Q + P T+VKVYKSGSFGRSLDI KFSSY ELRSELAHMFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLE LNSVP+QRLS+++CD+Y S+ ESRNLS GI SVGSLDY
Sbjct: 1 MRLSSAGFTQQSPEGERRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAFLPADLGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNENNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYFKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIRDDDLGMNSPLMWLRGENGNRGIQSLNFQGIGVAPWMQPRLDAPMLGMH-GDIYQAIAAAALQDMRAVDPSKQAPPSLLQFQQSQSVPNRPAGLLPPQMLQQSQPQPAFIQSVQETQSQAQTQSHLLQQQLQHQHSFTNQQQQPPPSQ---------QQQQQLVDHQQVSSVVSAMSQFASSSQAQSPSLQAISSMCQQQNLSSSNGNPATGPIVSPLHSLLGSFSQDETAHLLNLPRSDTLLSSAGWPPKRVAIDPLLPSGASQCILPQVGQLGAPNINVSQNAVSLPPFPGRECSIDQEGSNDPQSHLLFGVNIDSSSLLMQNGMSSLRGVGSDSDSTAIPFSSSNYLSTTGTDFSLNPTMTTSSCIDESAFLQSPENVGQANPPTRTYVKVYKSGSFGRSLDITKFSSYQELRSELAHMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLEFLNSVPIQRLSNSSCDDYVSRQESRNLSTGITSVGSLDY 899
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q5S8 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1355.12 bits (3506), Expect = 0.000e+0
Identity = 704/920 (76.52%), Postives = 774/920 (84.13%), Query Frame = 0
Match: A0A2R6Q5S8 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1355.12 bits (3506), Expect = 0.000e+0
Identity = 704/920 (76.52%), Postives = 774/920 (84.13%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEP-FLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGENQSQAQSQSH-------LQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQFA--SQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSS-NYMSNAG---VDFSLNPSITASSCIDETNFLQSHENLVQKDTP-PTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSS F +QSPEGE CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ST++EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+A+EQK+ FLPADL SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDF+QQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAAT SRFTIFYNPR+ PSEFVI LAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPW PGLPSFNGIKD+ LGMNSPLMWL GDNG++ QSLNFQG+GV+PWMQPR+DAS+LGMQ+ +IYQAMAAAALQEMR VD SK + PS +QFQQ Q ++ R L QMLQQSQP+ FL S +NQSQAQ+Q H LQQQLQ QNSF++Q ++ Q + Q +VD Q+VS V S ++ FA SQ QSPSL S+ QQQSFSDSNGN T+ + SPLH+ G F DE S LN RS LL+SAGWPPKRVAVDPLL S SQ LPQ++QLG HTN+SQ+A L P+ GR+CSIDQ G ND H LLFG NIDS+SLL+QNG+S + GVG+D +ST+V FTSS NY+SN G +F LNP +T SSCIDE+ FL+S ENL Q + P TFVKVYKSGSFGRSLDI+KFSSY ELR ELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPW EFVNSVWCIKILSP+EV +MGK GLELLNSVP+QRLS++NCD+Y S ESRNLS+GIASVGSLDY
Sbjct: 1 MRLSSVGFTQQSPEGENRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTHKEVDAHIPNYPSLPPQLICQLHNVTMHADMETDEVYAQMTLQPLSAQEQKDASFLPADLGVLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATISRFTIFYNPRSSPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWLPGLPSFNGIKDDDLGMNSPLMWLHGDNGDRGIQSLNFQGIGVTPWMQPRIDASILGMQS-NIYQAMAAAALQEMRAVDPSKQALPSLLQFQQAQNVSGRSSGLMQPQMLQQSQPQPVFLQSVKDNQSQAQAQVHSQSQPHLLQQQLQRQNSFTSQHQQLQLPL-----SQQQQHQTQLVDHQQVSTVVSTLSPFASNSQAQSPSLQAIASVCQQQSFSDSNGNAATNAIVSPLHSLMGSFNHDETSHLLNLPRSDTLLSSAGWPPKRVAVDPLLPSAASQCILPQVEQLGPPHTNTSQNAISLAPFPGRECSIDQDGSNDPHNHLLFGVNIDSSSLLMQNGMSSIRGVGTDSDSTTVHFTSSNNYLSNTGTTRTNFLLNPVMTPSSCIDESGFLRSPENLGQANPPIRTFVKVYKSGSFGRSLDISKFSSYHELRRELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWCIKILSPEEVHQMGKHGLELLNSVPIQRLSNSNCDDYSSHQESRNLSSGIASVGSLDY 914
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZNM6 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1352.81 bits (3500), Expect = 0.000e+0
Identity = 703/909 (77.34%), Postives = 777/909 (85.48%), Query Frame = 0
Match: A0A5J4ZNM6 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1352.81 bits (3500), Expect = 0.000e+0
Identity = 703/909 (77.34%), Postives = 777/909 (85.48%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNR--MLQHNQMLQQSQPEASFLYSGGENQSQA-QSQSHLQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSSA F +QSPEGE+ CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQL+CQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNE NQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKY KAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGI+D+ LGMNSPLMWLRG+NG + QSLNFQG+GV+PWMQPR+DAS+LGMQ DIYQA+AAAALQ+MR VD SK + PS +QFQQ Q + NR L QMLQQSQP+ +F+ S E+Q Q LQQQLQHQ+SF+NQ ++Q Q + QQ +VD Q+VS V S ++QF +SQ QSPSL +S+ QQQ+FS SNGNP TSP+ SPLH+ G FPQD+ S LN SRS LL+SAGWPPKRVA+DPLL SG SQ LPQ+ QLG + N SQ+A L P+ GR+CSID G ND H LLFG NIDS+SLL+QNG+S L GVGSD +ST++PF SSNY+S G DFSLNP++T SSCIDE+ FLQS EN+ Q + P TFVKV K+GSFGRSLDI KFSSY ELRSELAHMFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSV CIKILSPQEVQ+MGK G+ELL+SVP+QRLS+++CD+Y S+ ES NLS GI SVGSLDY
Sbjct: 1 MRLSSAGFTQQSPEGERRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAFLPADLGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNENNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYFKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDHVRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIRDDDLGMNSPLMWLRGENGNRGIQSLNFQGIGVTPWMQPRLDASVLGMQ-GDIYQAIAAAALQDMRVVDPSKQAPPSLLQFQQPQSVPNRPAGLVAAQMLQQSQPQPAFIQSVQESQVQVQHQPHLLQQQLQHQHSFTNQQQQQAAASQ-------QQQQQQLVDHQQVSSVVSALSQFASSSQAQSPSLQAISSMCQQQNFSSSNGNPATSPIVSPLHSLLGSFPQDDTSHLLNLSRSDTLLSSAGWPPKRVAIDPLLHSGASQCLLPQVGQLGPPNMNISQNAVSLPPFPGRECSIDHEGSNDPHSHLLFGVNIDSSSLLMQNGMSSLRGVGSDSDSTTIPFASSNYLSTTGTDFSLNPAMTTSSCIDESAFLQSTENVGQGNPPTRTFVKVSKAGSFGRSLDITKFSSYHELRSELAHMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVSCIKILSPQEVQQMGKPGVELLSSVPIQRLSNSSCDDYASRQESINLSTGITSVGSLDY 901
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UGD0 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1343.18 bits (3475), Expect = 0.000e+0
Identity = 694/913 (76.01%), Postives = 774/913 (84.78%), Query Frame = 0
Match: A0A2C9UGD0 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1343.18 bits (3475), Expect = 0.000e+0
Identity = 694/913 (76.01%), Postives = 774/913 (84.78%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGENQSQAQSQSH-----LQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKD-TPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSSA FN Q+ EGEK LNSELWHACAGPLVSLPAVG+RVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +LPA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP PFPLRLKRPWPPGLP+F+GIKD+ LGMNSPLMWLRGD G++ QS+NFQG+GV+PW+QPRVDASMLG+QT D+YQAMAAAALQEMR +D SK S S +QFQQ +R L QMLQQSQP +FL ENQ Q QSQS +QQQL HQ++F++Q ++Q QQQ +V+ Q++S V S ++QF ASQ QSP L +SL QQQSFSDSNGNPVTS V SPLH+ G F QDE S LN R+ AL+TS+GWP KR AV+PL+S+G Q LPQ++Q G+ TN SQ+A L P+ GRDCSIDQ D LLFG NI+ +SL++Q+G+S L GVGSD +ST+VPF+SSNYMS G DFSLNP++T SSCIDE+ FLQS EN+ Q + + TFVKV+KSGSFGRSLDI+KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVP+QRLS+ +CD+Y S+ +SRNLS+GI SVGSLDY
Sbjct: 1 MRLSSAGFNPQTQEGEKRVLNSELWHACAGPLVSLPAVGNRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP-PFPLRLKRPWPPGLPTFHGIKDDDLGMNSPLMWLRGD-GDRGIQSMNFQGIGVTPWLQPRVDASMLGLQT-DMYQAMAAAALQEMRAIDPSKPSTASIVQFQQQPNFPSRTGSLMPPQMLQQSQPHTAFLQGVQENQHQPQSQSQTQSHLIQQQLHHQHTFNSQQQQQLPQQQ-------------LVEHQQMSNVVSAISQFASASQSQSPPLQAISSLCQQQSFSDSNGNPVTSSVVSPLHSLMGSFSQDESSHLLNLPRTNALVTSSGWPSKRAAVEPLISAGAPQCVLPQVEQFGAHQTNISQNAVSLPPFPGRDCSIDQDSGTDPQSHLLFGVNIEPSSLILQSGMSSLRGVGSDSDSTTVPFSSSNYMSTTGTDFSLNPAMTPSSCIDESGFLQSPENVGQVNSSTKTFVKVHKSGSFGRSLDISKFSSYNELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPIQRLSNGSCDDYASRQDSRNLSSGITSVGSLDY 897
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EXB2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1336.24 bits (3457), Expect = 0.000e+0
Identity = 699/922 (75.81%), Postives = 771/922 (83.62%), Query Frame = 0
Match: A0A7J0EXB2 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1336.24 bits (3457), Expect = 0.000e+0
Identity = 699/922 (75.81%), Postives = 771/922 (83.62%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEP-FLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGENQSQAQSQSHLQQ---------QLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQFA--SQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSS-NYMSNAG---VDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSS F +QSPEGE CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ST++EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+A+EQK+ FLPADL SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDF+QQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAAT +RFTIFYNPR+ PSEFVI LAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPW PGLPSFNGIKD+ LGMNSPLMWL GDNG++ QSLNFQG+GV+PWMQPR+DAS+LGMQ+ +IYQAMAAAALQEMR VD SK + PS +QFQQ Q ++ R L QMLQQSQP+ FL S +NQSQAQ+QS + QLQ QNSF++Q ++ Q + Q +VD Q+VS V S ++ FA SQ QSPSL S+ QQQSFSDSNGN T+ + SPLH+ G F DE S LN RS LL+SAGWPPKRVAVDPLL S Q LPQ++ LG HTN+SQ+A L P+ GR+CSIDQ G ND H LLFG NIDS+SLL+QNG+S + GVG D +ST+V FTSS NY+SN G +F LNP +T SSCIDE+ FL+S ENL Q + P TFVKVYKSGSFGRSLDI+KFSSY ELR ELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPW EFVNSVWCIKILSP+EV +MGKQGLELLNSVP+QRLS++NCD+Y S+ ESRNLS+GIASVGSLDY
Sbjct: 59 MRLSSVGFTQQSPEGENICLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTHKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKDASFLPADLGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATITRFTIFYNPRSSPSEFVISLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWLPGLPSFNGIKDDDLGMNSPLMWLHGDNGDRGIQSLNFQGIGVTPWMQPRIDASILGMQS-NIYQAMAAAALQEMRAVDPSKQALPSLLQFQQAQNVSGRSSGLMQPQMLQQSQPQPVFLQSVKDNQSQAQAQSQVHSQSQPHLLQQQLQRQNSFTSQHQQLQLPL-----SQQQQHQTQLVDHQQVSTVVSTLSPFASNSQAQSPSLQAIASVRQQQSFSDSNGNAATNVIVSPLHSLVGSFNHDETSHLLNLPRSDTLLSSAGWPPKRVAVDPLLPSAALQCILPQVELLGPPHTNTSQNAISLAPFPGRECSIDQDGSNDPHNHLLFGVNIDSSSLLMQNGMSSIRGVGIDSDSTTVRFTSSNNYLSNTGTTRTNFLLNPVMTPSSCIDESGFLRSPENLGQANPPTRTFVKVYKSGSFGRSLDISKFSSYHELRRELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWCIKILSPEEVHQMGKQGLELLNSVPIQRLSNSNCDDYASRQESRNLSSGIASVGSLDY 974
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067KP61 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1335.86 bits (3456), Expect = 0.000e+0
Identity = 690/909 (75.91%), Postives = 762/909 (83.83%), Query Frame = 0
Match: A0A067KP61 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1335.86 bits (3456), Expect = 0.000e+0
Identity = 690/909 (75.91%), Postives = 762/909 (83.83%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGENQSQAQSQSHLQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQ-GGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRL+SA FN Q+ EGEK LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +LPA+L SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPL KYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSF+G+KD+ LGMNSPLMWLRGD G++ QS+NFQGLGV+PWMQPRVDASMLG+QT D+Y AMAAAALQEMR +D SK SN S +QFQQ + +R L QMLQ SQP+ +FL S ENQ Q Q+Q+ Q Q+ Q + Q Q Q QQ +V+ Q++ V S ++QF ASQ QSP L +SL QQQSFSDSNGNPVTS V SPLH+ G F QDE S L N R+ L+TS+ WP KR AV+PL+SSG Q LPQ++QLG N S + L P+ GR CS+DQ G D SH LLFG NI+ +SLL+Q+G+SGL GVGSD +ST++PF+SSNYMS G DFSLNP++T SSCIDE+ FLQS EN+ Q + P TFVKVYKSGSFGRSLDI KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVP+QRLS+ +CD+Y S+ +SRNLS GI SVGSLDY
Sbjct: 1 MRLASAGFNPQTQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDTYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDLGMNSPLMWLRGD-GDRGIQSMNFQGLGVTPWMQPRVDASMLGLQT-DMYHAMAAAALQEMRAIDPSKPSNTSLLQFQQHVNLPSRTAALMQPQMLQSSQPQQAFLQSVQENQHQPQAQT------QTQSHLLQQQLQHQHSLSTQQQQQPLPQQQQLVEHQQIQNVVSSISQFASASQSQSPPLQAISSLCQQQSFSDSNGNPVTSSVVSPLHSLMGSFSQDETSHLMNMPRTNPLMTSSAWPSKRAAVEPLISSGAPQCVLPQVEQLGPPQANISHSSVSLPPFPGRGCSLDQEGADPQSH--LLFGVNIEPSSLLLQSGMSGLRGVGSDSDSTTIPFSSSNYMSTTGSDFSLNPAMTPSSCIDESGFLQSPENVGQVNPPSRTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPIQRLSNGSCDDYASRQDSRNLSTGITSVGSLDY 899
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZC01 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1335.47 bits (3455), Expect = 0.000e+0
Identity = 708/932 (75.97%), Postives = 779/932 (83.58%), Query Frame = 0
Match: A0A5J4ZC01 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1335.47 bits (3455), Expect = 0.000e+0
Identity = 708/932 (75.97%), Postives = 779/932 (83.58%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNR--MLQHNQMLQQSQPEASFLYSGGENQSQAQSQSHL-QQQLQHQNSF-----------------------SNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSLQQQ-SFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPPTFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLS-SNNCDNYPSQHESRNLSNGIASVGSLDY 901
M++SSA F +Q PEGEK CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+PFLPADL SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD VRW +SHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKD+ LGMNSPLMWLRG+NG++ QSLNFQG+GV+PWM PR+DA M GMQ+ DIYQAMAAAALQEMR D SK + PS +QFQQ Q + NR L QMLQQSQ + +FL S ENQSQ+Q Q HL QQQLQ QNSF Q ++QQQQQQ Q Q + QQ +VD Q+VS + S + QF +SQ SPS+ +S+ QQ + S SNG P+T P+ SPLH+ G FPQDE S LN RS ALL+ GWPPKRVA+DPLL SG SQ LPQ +QLG +TN SQ++ L P+ GR+CSIDQ G ND LLFG NIDS+SLL+QNGIS L G+GSD +ST++PF SSNY+S G DFSLNP++T SSCIDE+ FLQS EN+ Q + T+VKVYK GSFGRSLDI+KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSP EVQ+MGKQGLELLNSVP+QRLS S++CD+Y S+ ESRNLS+GI SVGSLDY
Sbjct: 1 MKISSAGFTQQWPEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDPFLPADLGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDDDLGMNSPLMWLRGENGDRGIQSLNFQGIGVTPWMHPRLDAPMFGMQS-DIYQAMAAAALQEMRAADLSKQAPPSLLQFQQPQSVHNRPSGLILPQMLQQSQLQPTFLQSIQENQSQSQIQPHLIQQQLQQQNSFISQQQQQHLPSPQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQLVDQQQVSTIVSSLPQFASSSQAPSPSVQAISSMCQQQNLSSSNGKPMTGPLVSPLHSLLGSFPQDEASHLLNLPRSDALLSPTGWPPKRVAIDPLLPSGASQCILPQAEQLGLPNTNVSQNSISLPPFPGRECSIDQEGSNDPQSHLLFGVNIDSSSLLMQNGISSLRGIGSDSDSTTIPFASSNYLSTTGTDFSLNPAMTPSSCIDESAFLQSPENVGQANPTRTYVKVYKLGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPPEVQQMGKQGLELLNSVPIQRLSNSSSCDDYVSRQESRNLSSGITSVGSLDY 931
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N9EJN6 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1329.31 bits (3439), Expect = 0.000e+0
Identity = 700/916 (76.42%), Postives = 762/916 (83.19%), Query Frame = 0
Match: A0A0N9EJN6 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1329.31 bits (3439), Expect = 0.000e+0
Identity = 700/916 (76.42%), Postives = 762/916 (83.19%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEP-FLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGL-GVSPWMQPRVDASMLGMQTADIYQ-AMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGEN-----QSQAQSQSHLQQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQ-LNFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MR SSA F +QSPEGEK CLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPNH +L PQLICQLHN+TMHAD ETDEVYAQMTLQPL+ EEQK+ FLPADL A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKA YHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPP LP+F+GIK+E LGMNSPL+WLRGDNG++ QSLNFQG+ GV+PWMQPR+D SMLGMQ+ DIYQ AAAA+QEMR VD SK P MQFQ+ Q + R + QMLQQS P+ FL S EN LQQQLQHQ SF+NQ ++Q Q Q +VD Q VS V S ++QF +SQ QSPSL +S+ QQQSFSDSNGNP T+ V SPLH+F G F QDE S L+ RS ALL+SAGWP KRVAVDPLL S SQ LPQ++QLG HT +SQ+A L P+ GR+CSIDQ G ND LLFG NIDS+SL++QNGIS + GVGSDG+S ++PF SSNY+S G DFSLNP +T SSCIDE+ FLQS EN+ Q + P TFVKV+KSGSFGRSLDI+KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPW EFVNSVWCIKILSPQEV +MGK+GLELLNSVP QRLS +NCD+Y S ESRNLS+GIAS+GSLDY
Sbjct: 1 MRFSSAGFTQQSPEGEKRCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVTASTNKEVDAHIPNHTSLSPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKDASFLPADLGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPNLPTFSGIKEEDLGMNSPLVWLRGDNGDRGIQSLNFQGIGGVTPWMQPRLDTSMLGMQS-DIYQAMAAAAAVQEMRAVDPSKQGLPYLMQFQRPQSVPGRSAGVMQPQMLQQSHPQPVFLQSVKENQQQAQAQAQAHSHLLQQQLQHQLSFTNQHQQQPLSQ---------QQPQQLVDHQHVSTVVSTMSQFGSSSQTQSPSLQAISSMCQQQSFSDSNGNPATNAVVSPLHSFMGSFSQDETSHLLSLPRSDALLSSAGWPSKRVAVDPLLPSAASQCILPQVEQLGPPHTTTSQNAISLPPFPGRECSIDQEGSNDPQNNLLFGVNIDSSSLIMQNGISSIRGVGSDGDSMTMPFASSNYLSTTGTDFSLNPVVTPSSCIDESGFLQSSENVGQANPPTRTFVKVHKSGSFGRSLDISKFSSYRELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWCIKILSPQEVHQMGKRGLELLNSVPTQRLSDSNCDDYASGQESRNLSSGIASMGSLDY 906
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9U6V8 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 689/913 (75.47%), Postives = 765/913 (83.79%), Query Frame = 0
Match: A0A2C9U6V8 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 689/913 (75.47%), Postives = 765/913 (83.79%), Query Frame = 0
Query: 1 MRLSSASFNRQSPEGEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGITNRM--LQHNQMLQQSQPEASFLYSGGENQ----SQAQSQSHL-QQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
MRLSS FN Q+ EGEK LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV STN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +LPA+L A SKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRR RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKY KAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSF+GIKD+ GMNSPLMWLRGD G++ QS++FQGLGV+PWMQPRVDASMLG+QT D+YQAMAAAALQEMR +D SK S S +QFQQ + +R L QMLQQ Q + +FL ENQ +Q Q+QSHL QQQL Q+S + ++ QQQ Q Q +V+ Q++ V S ++QF ASQ QSP L +SL QQQSFSDSNGNPVTS V SP+H+ G F QDE + L N R++AL+TS+ WP KR AV+PL+SSG Q L Q++QLG TN SQ + L P+ GR+CSIDQ G D LLFG NI+ +SL +Q+G+S L GVGSD +ST++PF+SSNYMS G DFSLNP++T SSCIDE+ FLQS EN+ Q + P TFVKVYKSGSFGRSLDI KFSSY ELRSELA MFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVP+QRLS+ +CD+Y S+ +SRNLS GI SVGSLDY
Sbjct: 1 MRLSSVGFNPQTQEGEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRTNRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYFKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGIKDDDFGMNSPLMWLRGD-GDRGIQSMSFQGLGVTPWMQPRVDASMLGLQT-DMYQAMAAAALQEMRAIDPSKSSTTSLLQFQQHPNLPSRTAALMQPQMLQQPQSQQAFLQGVQENQHQPRTQVQTQSHLVQQQLHSQHSLNGPQQQPQQQ------QQHPLSQQQLVEHQQIPNVVSAMSQFASASQSQSPPLPAISSLCQQQSFSDSNGNPVTSSVVSPMHSLIGSFSQDESTHLINLPRTSALITSSAWPSKRAAVEPLISSGAPQCVLSQVEQLGGPQTNISQSSVSLPPFPGRECSIDQEGGTDPQSHLLFGFNIEPSSLQLQSGMSSLRGVGSDCDSTTIPFSSSNYMSTTGTDFSLNPAMTPSSCIDESGFLQSPENVGQVNPPTRTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPIQRLSNGSCDDYASRQDSRNLSTGITSVGSLDY 905
BLAST of XM_017380060.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A6MWG0 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 687/898 (76.50%), Postives = 752/898 (83.74%), Query Frame = 0
Match: A0A6A6MWG0 (Auxin response factor {ECO:0000256|RuleBase:RU004561})
HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 687/898 (76.50%), Postives = 752/898 (83.74%), Query Frame = 0
Query: 15 GEKSCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVASTNREVDAHIPNHPNLPPQLICQLHNITMHADAETDEVYAQMTLQPLNAEEQKEPFLPADLAAHSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLFLGIRRAIRPQTVMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGIKDESLGMNSPLMWLRGDNGEQAFQSLNFQGLGVSPWMQPRVDASMLGMQTADIYQAMAAAALQEMRTVDTSKHSNPSAMQFQQTQGI-TNRMLQHNQMLQQSQPEASFLYSGGEN----QSQAQSQSHL-QQQLQHQNSFSNQLKKQQQQQQHQHLQSVRSQQHHMVDDQKVSGVGSLVTQF--ASQVQSPSLDKFTSL-QQQSFSDSNGNPVTSPVASPLHNFTGLFPQDEDSQL-NFSRSAALLTSAGWPPKRVAVDPLLSSGVSQSFLPQLQQLGSLHTNSSQDAFPLLPYNGRDCSIDQGGDNDSHRPLLFGANIDSTSLLVQNGISGLGGVGSDGNSTSVPFTSSNYMSNAGVDFSLNPSITASSCIDETNFLQSHENLVQKDTPP-TFVKVYKSGSFGRSLDIAKFSSYIELRSELAHMFGLEGQLEDPIRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPVQRLSSNNCDNYPSQHESRNLSNGIASVGSLDY 901
GEK LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV ASTN+EVDAHIPN+P+LPPQLICQLHN+TMHAD ETDEVYAQMTLQPL+ +EQK+ +LP +L SKQP NYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLH+NEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQL LGIRRA RPQTVMPSSVLS DSMHLGLLAAAAHAAATNSRFTIFYNPRA PSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLD VRW NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP PFPLRLKRPWPPGLPSF+GIKD+ LGMNSPLMWLRGD G++ QS+NFQGLGV+PWMQPRVDASML +QT D+YQAMAAAALQEMR D SK S S +QFQQ + L QMLQQSQP+ +FL E QSQAQ+QSHL QQQL H +S ++Q ++Q QQQ ++ V S ++QF ASQ QSP L +SL QQQSFSDSNGNPVTS V SPLH+ G F QDE S L N R+ L+TS+GWP KR AV+PL+SSG Q LPQ+QQLG TN SQ + L P+ GR+CS+DQ G D LLFG NI+ +SLL+QNG+S L GVGSD +ST+VPF+SSNYM NAG DFSLNP++T SSCIDE+ FLQS EN+ Q + P TFVKVYKSGSFGRSLDI KFSSY ELRSELAHMFGLEGQLEDP+RSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQ+MGK+GLELLNSVP+QRLS+ +CD+Y S+ +SRNLS GI SVGSLDY
Sbjct: 25 GEKRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDAYLPTELGTSSKQPANYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP-PFPLRLKRPWPPGLPSFHGIKDDDLGMNSPLMWLRGD-GDRGIQSMNFQGLGVTPWMQPRVDASMLSLQT-DMYQAMAAAALQEMRAFDPSKSSTASLLQFQQHPNLPRTAALIPPQMLQQSQPQPAFLQGVQEKQHQPQSQAQTQSHLIQQQLHHPHSLNSQQQQQLPQQQQLVEHQ------------QIPNVVSTISQFPSASQSQSPPLQAISSLCQQQSFSDSNGNPVTSSVVSPLHSLMGSFSQDESSHLMNLPRTNPLVTSSGWPSKRAAVEPLISSGAPQGVLPQVQQLGPPQTNISQSSVSLPPFPGRECSMDQDGGTDPQSHLLFGVNIEPSSLLLQNGMSSLRGVGSDSDSTNVPFSSSNYMGNAGTDFSLNPAMTPSSCIDESGFLQSPENVGQVNPPTRTFVKVYKSGSFGRSLDITKFSSYNELRSELAHMFGLEGQLEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQQMGKRGLELLNSVPIQRLSNGSCDDYASRQDSRNLSTGITSVGSLDY 907
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B9D2 | E-Value: 0.000e+0, PID: 77.67 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A2R6Q5S8 | E-Value: 0.000e+0, PID: 76.52 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A5J4ZNM6 | E-Value: 0.000e+0, PID: 77.34 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A2C9UGD0 | E-Value: 0.000e+0, PID: 76.01 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A7J0EXB2 | E-Value: 0.000e+0, PID: 75.81 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A067KP61 | E-Value: 0.000e+0, PID: 75.91 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A5J4ZC01 | E-Value: 0.000e+0, PID: 75.97 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A0N9EJN6 | E-Value: 0.000e+0, PID: 76.42 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A2C9U6V8 | E-Value: 0.000e+0, PID: 75.47 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
| A0A6A6MWG0 | E-Value: 0.000e+0, PID: 76.50 | Auxin response factor {ECO:0000256|RuleBase:RU0045... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |