Resource Type:
Polypeptide
Name:
XM_017377247.1
Identifier:
XM_017377247.1-protein
Sequence:
MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVHQNPQLLPPLEPQV
DSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQP
RHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQK
EANNNNTQSPSSSADQVVANHFNPFSSQQPLNLAALHDLNNHYGAAAGST
SSYGGFKTGLSDMRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAP
GSNLFSYQGQASEGASAGLVKVEEAGRGLNLSRQLLNISNQNNSNHNESN
QYWGSTRGGNSWTTDFTSQVTNTSSPTPFL
Sequence Length:
330
Sequence Checksum:
e77f72a5ad91593927001d500fb85b8d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017377247.1, derives from mRNA, XM_017377247.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BP25 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 233.802 bits (595), Expect = 1.977e-72
Identity = 164/337 (48.66%), Postives = 197/337 (58.46%), Query Frame = 0
Match: A0A5J5BP25 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 233.802 bits (595), Expect = 1.977e-72
Identity = 164/337 (48.66%), Postives = 197/337 (58.46%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVHQNPQLLPPLEP-QVD--SSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHFNPFSSQQPLNLAALHDLNNHYGAAAGS--TSSYGGFKTGLSD-MRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSYQGQASEGASAGLV------------------KVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M FSS VP+Y ++ NWH QLQQQ NHQ V +N L PP QV S G I+PGS VDRARLA+IP PEAG+NCPRCDST TKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR+VPVGGGCRRNKRSKS S+KS + N S S D V+ HF SSQ P +AAL +L + G G G G +D M FQ+G + S S++IL+ WRLP L+GF+ P +NL++YQ GAS+ ++ K+EE+ +GLNLSR IS N YWG+ GN+WT
Sbjct: 1 MVFSS-VPIY--LENPNWH-QLQQQ----NHQEGTVSENHHLPPPPPAPQVSGGSGGSIRPGSMVDRARLARIPQPEAGLNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKSSSSKSQSAAAAAEQHTGPKSTNASPSSCSTD--VSGHFPQTSSQLPF-MAALQNLTQYVGGNIGGFQPQMVGAGGAGQTDHMGFQIG--SDSGGSNNILSAGAADHWRLPFLTGFD--PHTNLYAYQNDQVVGASSSVIGDGQQLRSVTSSSRITQLKMEES-QGLNLSRPFTGIS---------ENNYWGT---GNTWT 309
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UMH9 ((Putative zinc finger, Dof-type {ECO:0000313|EMBL:OTG24259.1}))
HSP 1 Score: 226.483 bits (576), Expect = 1.031e-69
Identity = 154/348 (44.25%), Postives = 190/348 (54.60%), Query Frame = 0
Match: A0A251UMH9 ((Putative zinc finger, Dof-type {ECO:0000313|EMBL:OTG24259.1}))
HSP 1 Score: 226.483 bits (576), Expect = 1.031e-69
Identity = 154/348 (44.25%), Postives = 190/348 (54.60%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQ----QQSHNNHQLQVVHQNPQLLPPL-EPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKS---------KSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHF---NPFSSQQPLNLAALHDLNNHYGAAAGSTSSYGGFKTGLSDMRFQLGHHTPSSVS-SSILTGKGGQGWRLPILSGFEQAPGSNLFSYQGQASEGASAGL----------VKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWTTDFTSQV 320
M FSS P F H NWH QLQQ QQ ++ +NP PL PQ G I+PGS VDRARLAK+P+PE G+NCPRCDST TKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR+VPVGGGCRRNKRS K TKSL+ SPS + + +A +P S Q P ++++ G A+ SS GGF T FQLG ++ + ++IL+ G+ WRLP L+GFE P + F YQ + + A A VKVEE R LNLS+Q+LNI N + W G N+ +T T+ +
Sbjct: 1 MVFSSVAP---FLDHHNWHQQLQQSNNPQQGNDGGS-----ENPNFQSPLVPPQRGGEGSIRPGSMVDRARLAKLPMPEPGLNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKHSRSKSPSQKGTKSLNG----------------SPSRCSTENIATSTQIPHPPSLQMPF-------MSSYGGVASNIISSVGGFHTQSEIGNFQLGTGGSNATNLNNILSIGSGETWRLPFLAGFE-VPNNTNFLYQSEVAVEAPASTMLENSRVNPPVKVEE-NRDLNLSKQILNIPENTNQQPWQVGNNWAEFSGVNASSTPTTNFI 315
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WNM2 ((Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:PHT46760.1}))
HSP 1 Score: 224.942 bits (572), Expect = 4.785e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Match: A0A2G2WNM2 ((Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:PHT46760.1}))
HSP 1 Score: 224.942 bits (572), Expect = 4.785e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVH---QNPQLL---PPLEPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLD-------NITTNSNQKEANNNNTQSPSSSADQVVANHFNPFSSQQPLN----LAALHDLNNHYGA--AAGSTSSYGGFKTGLSDMRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSY-QGQASEGASAGLVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M FSS PVY H N H QLQQ H QV + +NPQL PP S G I+PGS VDRARLAKIPLPEAG+ CPRCDST TKFCYFNNY+L+QPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKS + + N TT ++ ++ + + SPSS +++ + Q P+ +AA +LN+HYG S+ G G +M FQ+G T S+ + S +G WRLP L A +NL+ + QG+ E +S + ++ +GLN ++Q L + N +NQYW GGN+WT
Sbjct: 1 MVFSS-FPVY--LDHPNLH-QLQQPDGHQ----QVGNPGLENPQLTALQPPPVQMGASPGSIRPGSMVDRARLAKIPLPEAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSSTNNNSSKTTGSNVNSTTTADPRQIGTSTSASPSSCNTEIITGRHHFPHEQSPVQFTPLMAAFQNLNHHYGGFQPPPLVSTQGAATLGHPEMGFQIGSTTNSTNNLSAPSGVSDHQWRLPSL-----AASTNLYPFHQGEGIESSSGNSIAHDD--QGLNSTKQFL------GTMENNTNQYW----GGNAWT 308
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8H0G9 ((dof zinc finger protein DOF3.6 {ECO:0000313|RefSeq:XP_016576870.1}))
HSP 1 Score: 224.942 bits (572), Expect = 5.331e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Match: A0A1U8H0G9 ((dof zinc finger protein DOF3.6 {ECO:0000313|RefSeq:XP_016576870.1}))
HSP 1 Score: 224.942 bits (572), Expect = 5.331e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVH---QNPQLL---PPLEPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLD-------NITTNSNQKEANNNNTQSPSSSADQVVANHFNPFSSQQPLN----LAALHDLNNHYGA--AAGSTSSYGGFKTGLSDMRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSY-QGQASEGASAGLVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M FSS PVY H N H QLQQ H QV + +NPQL PP S G I+PGS VDRARLAKIPLPEAG+ CPRCDST TKFCYFNNY+L+QPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKS + + N TT ++ ++ + + SPSS +++ + Q P+ +AA +LN+HYG S+ G G +M FQ+G T S+ + S +G WRLP L A +NL+ + QG+ E +S + ++ +GLN ++Q L + N +NQYW GGN+WT
Sbjct: 1 MVFSS-FPVY--LDHPNLH-QLQQPDGHQ----QVGNPGLENPQLTALQPPPVQMGASPGSIRPGSMVDRARLAKIPLPEAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSSTNNNSSKTTGSNVNSTTTADPRQIGTSTSASPSSCNTEIITGRHHFPHEQSPVQFTPLMAAFQNLNHHYGGFQPPPLVSTQGAATLGHPEMGFQIGSTTNSTNNLSAPSGVSDHQWRLPSL-----AANTNLYPFHQGEGIESSSGNSIAHDD--QGLNSTKQFL------GTMENNTNQYW----GGNAWT 308
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CBK8 ((Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:PHU16111.1}))
HSP 1 Score: 224.942 bits (572), Expect = 5.331e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Match: A0A2G3CBK8 ((Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:PHU16111.1}))
HSP 1 Score: 224.942 bits (572), Expect = 5.331e-69
Identity = 151/333 (45.35%), Postives = 193/333 (57.96%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVH---QNPQLL---PPLEPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLD-------NITTNSNQKEANNNNTQSPSSSADQVVANHFNPFSSQQPLN----LAALHDLNNHYGA--AAGSTSSYGGFKTGLSDMRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSY-QGQASEGASAGLVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M FSS PVY H N H QLQQ H QV + +NPQL PP S G I+PGS VDRARLAKIPLPEAG+ CPRCDST TKFCYFNNY+L+QPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKS + + N TT ++ ++ + + SPSS +++ + Q P+ +AA +LN+HYG S+ G G +M FQ+G T S+ + S +G WRLP L A +NL+ + QG+ E +S + ++ +GLN ++Q L + N +NQYW GGN+WT
Sbjct: 1 MVFSS-FPVY--LDHPNLH-QLQQPDGHQ----QVGNPGLENPQLTALQPPPVQMGASPGSIRPGSMVDRARLAKIPLPEAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSSTNNNNSKTTGSNVNSTTTADPRQIGTSTSASPSSCNTEIITGRHHFPHEQSPVQFTPLMAAFQNLNHHYGGFQPPPLVSTQGAATLGHPEMGFQIGSTTNSTNNLSAPSGVSDHQWRLPSL-----AANTNLYPFHQGEGIESSSGNSIAHDD--QGLNSTKQFL------GTMENNTNQYW----GGNAWT 308
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6MD78 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 222.631 bits (566), Expect = 6.787e-68
Identity = 155/348 (44.54%), Postives = 199/348 (57.18%), Query Frame = 0
Match: A0A5N6MD78 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 222.631 bits (566), Expect = 6.787e-68
Identity = 155/348 (44.54%), Postives = 199/348 (57.18%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVH----QNPQLLPPLEPQ--------VDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKR-SKSKSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHFNPFSSQQPLNLAALHDLNNHYGAAAGSTSSYGGFKTGLSDMRFQLGHHTPSSVS-SSILTGKGGQGWRLPILSGFEQAPGSNLFSYQ--GQASEGASAGLVKVE-------------------EAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M FSS VP Y DQH NWH Q+QQ NHQ Q+V +NP+L PP PQ G I+PGS VD+AR+AKIP+PE G+NCPRCDST TKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR+VPVGGGCR+NKR +KS+S+KS + S + SPS + + +A+ S+ L L + + + G + TS+ GGF+ FQLG + ++ + +SIL+ G + WRLP L+GFE NLF+YQ G A + S+ +V + E +GL+LSRQ L +S+ N Q W GN WT
Sbjct: 1 MVFSS-VPTY-LDQH-NWHLQVQQ----TNHQ-QLVGGGGGENPRLPPPPPPQQADGGGGSARVEGSIRPGSMVDQARMAKIPMPEPGLNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKRNNKSRSSKSPNRTVPKS--------VSDSPSRCSTETMAS--TQLSNPPSLQLPFMSSMGQYGGVGSNITSNLGGFQPQNEIGSFQLGSGSSTANNFNSILSIGGVESWRLPFLAGFEVPNNPNLFNYQSEGVADQAPSSSMVGGDMRVPHTRIDNTLINPPVKMEDNQGLSLSRQFLGVSDTTN------QQPW----VGNPWT 320
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6M391 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 221.09 bits (562), Expect = 1.215e-67
Identity = 154/347 (44.38%), Postives = 197/347 (56.77%), Query Frame = 0
Match: A0A5N6M391 (Dof-type domain-containing protein {ECO:0000259|PROSITE:PS50884})
HSP 1 Score: 221.09 bits (562), Expect = 1.215e-67
Identity = 154/347 (44.38%), Postives = 197/347 (56.77%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQL--QVVHQNPQLLPPLEPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHF---NPFSSQQPLNLAALHDLNNHYGAAAGSTSSYGGFKTGLSDMRFQLGHHTPSSVS---SSILTGKGGQGWRLPILSGFEQAPG--SNLFSYQGQASEGASAG----------LVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWTTDFTSQVTNTSSPT 327
M FSS P F H NWH QLQQ +NHQ +NP PP + G ++PGS VDRARLAK+P+PE G+NCPRCDST TKFCYFNNYSL+QPRHFCKTCRRYWTRGGALR+VPVGGGCRRNKRSK +N + S ++ + + SPS + + +A +P S Q P+ +++ G ++ TSS GGF F LG T SS S+I + G+ WRLP L+GFE P +NLF Y +++ A A LVKVEE R +N SRQ+L S N + Q W G N+W +F+ T++ +PT
Sbjct: 1 MVFSSVAP---FLDHHNWHQQLQQ----SNHQGINDGGGENPNFQPPQRGE----GSVRPGSMVDRARLAKLPMPEPGLNCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK-------NNRRSRSPSQKGTKSISGSPSRCSTENIATSTQLPHPPSFQMPI-------MSSFGGVSSNITSSIGGFHHQSEVSNFHLG--TGSSYGNNFSNISSIGSGESWRLPFLAGFE-VPNNTTNLFVYPSESTIEAPASSLLENSQANRLVKVEE-NRDMNPSRQILGTS------ENTNQQPW--QVGMNNW-AEFSGINTSSGTPT 309
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A142IXE7 ((DOF transcription factor 14 {ECO:0000313|EMBL:AMR68989.1}) (Fragment))
HSP 1 Score: 220.705 bits (561), Expect = 1.875e-67
Identity = 159/350 (45.43%), Postives = 200/350 (57.14%), Query Frame = 0
Match: A0A142IXE7 ((DOF transcription factor 14 {ECO:0000313|EMBL:AMR68989.1}) (Fragment))
HSP 1 Score: 220.705 bits (561), Expect = 1.875e-67
Identity = 159/350 (45.43%), Postives = 200/350 (57.14%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVHQNPQLL-PPLEPQ--------VDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHF-NPFSSQQPLNLAALHDLNNHYGAAAGSTSSYGGFKTGLSDM--RFQLGH-HTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSYQGQASEGASAG----------LVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWTTDFTSQVTNTSSPT 327
M FSS P DQH NWH QLQQ +NP PP+ PQ G ++PGS VDRAR+AK+P+PE G+NCPRCDST TKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR+VPVGGGCRRNKRS ST+S + +QK + SPS S + + +P S Q P ++++ G A TS+ GF ++M FQLG T + S+IL+ G+ WRLP L+GFE +NLF YQ + + A A VKVEE RGLN+SRQ + +S N + Q W + GN+W +F+S V +TS+PT
Sbjct: 1 MVFSSVTPF--IDQH-NWHQQLQQSNLQ--QGNGGGGENPSFQSPPVPPQHGSNGGPGGSGEGSVRPGSMVDRARIAKLPMPEPGLNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSNKNSTRS-----KSPSQKAL----SGSPSRSDNIATSTQLPHPPSLQLPF-------MSSYGGIAGNITSNLAGFHP-QNEMGNNFQLGSGSTNGNNFSNILSIGSGESWRLPFLAGFEVPNNTNLFHYQSEGTVEAPASSIIDNSQTDPPVKVEE-NRGLNISRQTIGMS------QNTNQQPW---QAGNNW-AEFSS-VNSTSTPT 316
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1LR96 ((DOF transcription factor 14 {ECO:0000313|EMBL:PWA51522.1}))
HSP 1 Score: 220.705 bits (561), Expect = 2.327e-67
Identity = 160/350 (45.71%), Postives = 200/350 (57.14%), Query Frame = 0
Match: A0A2U1LR96 ((DOF transcription factor 14 {ECO:0000313|EMBL:PWA51522.1}))
HSP 1 Score: 220.705 bits (561), Expect = 2.327e-67
Identity = 160/350 (45.71%), Postives = 200/350 (57.14%), Query Frame = 0
Query: 1 MAFSSSVPVYNFDQHQNWHHQLQQQQSHNNHQLQVVHQNPQLL-PPLEPQ--------VDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQKEANNNNTQSPSSSADQVVANHF-NPFSSQQPLNLAALHDLNNHYGAAAGSTSSYGGFKTGLSDM--RFQLGH-HTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSYQGQASEGASAG----------LVKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWTTDFTSQVTNTSSPT 327
M FSS P DQH NWH QLQQ +NP PP+ PQ G I+PGS VDRAR+AK+P+PE G+NCPRCDST TKFCYFNNYSLTQPRHFCKTCRRYWTRGGALR+VPVGGGCRRNKRS ST+S + +QK + SPS S + + +P S Q P ++++ G A+ TS+ GF ++M FQLG T + S+IL+ G+ WRLP L+GFE +NLF YQ + + A A VKVEE RGLN+SRQ +S N + Q W + GN+W +F+S V +TS+PT
Sbjct: 1 MVFSSVTPF--LDQH-NWHQQLQQSNLQ--QGNGGGGENPSFQSPPVPPQHGSNGGPGGSGEGSIRPGSMVDRARIAKLPMPEPGLNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSNKNSTRS-----KSPSQKAL----SGSPSRSDNIATSTQLPHPPSLQLPF-------MSSYGGIASNITSNLAGFHP-QNEMGNNFQLGSGSTNGNNFSNILSIGSGESWRLPFLAGFEVPNNTNLFHYQSEGTVEAPASSIIDNSQTDPPVKVEE-NRGLNISRQTTGMS------ENTNQQPW---QAGNNW-AEFSS-VNSTSTPT 316
BLAST of XM_017377247.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7WAH6 ((dof zinc finger protein DOF2.4-like {ECO:0000313|RefSeq:XP_009774236.1, ECO:0000313|RefSeq:XP_009774300.1}))
HSP 1 Score: 218.009 bits (554), Expect = 1.906e-66
Identity = 149/340 (43.82%), Postives = 188/340 (55.29%), Query Frame = 0
Match: A0A1U7WAH6 ((dof zinc finger protein DOF2.4-like {ECO:0000313|RefSeq:XP_009774236.1, ECO:0000313|RefSeq:XP_009774300.1}))
HSP 1 Score: 218.009 bits (554), Expect = 1.906e-66
Identity = 149/340 (43.82%), Postives = 188/340 (55.29%), Query Frame = 0
Query: 1 MAFSSSVPVY----NFDQHQNWHHQLQQQQSHNNHQLQVVHQNPQLLPPLEPQVDSSGFIKPGSTVDRARLAKIPLPEAGVNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKSKSTKSLDNITTNSNQKEANNNNT-------------QSPSSSADQVVANHFNPFSSQQPLNLAALHDLNNHYGA----AAGSTSSYGGFKTGLSDMRFQLGHHTPSSVSSSILTGKGGQGWRLPILSGFEQAPGSNLFSYQGQASEGASAGL------VKVEEAGRGLNLSRQLLNISNQNNSNHNESNQYWGSTRGGNSWT 313
M+FSS PVY N Q Q H Q N QL P +PP S G I+PGS VDRARLAKIPLPEAG+ CPRCDS+ TKFCYFNNY+L QPRHFCK+CRRYWTRGGALRSVPVGGGCRRNKRSKS TN++ K A NNT SPSS + ++ HF+ S+ +AA +LN+ YG ST + GG +M FQ+G+ T + +++ G WRLP L+ +NL+ +QG+ E +G+ V++EE +GLN ++Q L E+NQYW GGN+WT
Sbjct: 1 MSFSS-FPVYLDHPNLQQLQQLDHNQQGNPGLENSQL------PTAVPPAH-VGGSPGSIRPGSMVDRARLAKIPLPEAGLKCPRCDSSNTKFCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSKS----------TNNSSKTAGGNNTAERQIGTTSTSTSASPSSCSKEITGQHFSQSSTHLTPLMAAFQNLNHQYGGFQPPPLVSTQNNGGLG---HEMGFQIGNSTNNLQAAT--GGSDHHQWRLPSLA------ATNLYPFQGEGIEATPSGISHQDSVVRMEENNQGLNSTKQFLGTM--------ENNQYW----GGNAWT 299
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5BP25 | E-Value: 1.977e-72, PID: 48.66 | Dof-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A251UMH9 | E-Value: 1.031e-69, PID: 44.25 | (Putative zinc finger, Dof-type {ECO:0000313|EMBL:... [more] |
| A0A2G2WNM2 | E-Value: 4.785e-69, PID: 45.35 | (Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:... [more] |
| A0A1U8H0G9 | E-Value: 5.331e-69, PID: 45.35 | (dof zinc finger protein DOF3.6 {ECO:0000313|RefSe... [more] |
| A0A2G3CBK8 | E-Value: 5.331e-69, PID: 45.35 | (Dof zinc finger protein DOF2.2 {ECO:0000313|EMBL:... [more] |
| A0A5N6MD78 | E-Value: 6.787e-68, PID: 44.54 | Dof-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A5N6M391 | E-Value: 1.215e-67, PID: 44.38 | Dof-type domain-containing protein {ECO:0000259|PR... [more] |
| A0A142IXE7 | E-Value: 1.875e-67, PID: 45.43 | (DOF transcription factor 14 {ECO:0000313|EMBL:AMR... [more] |
| A0A2U1LR96 | E-Value: 2.327e-67, PID: 45.71 | (DOF transcription factor 14 {ECO:0000313|EMBL:PWA... [more] |
| A0A1U7WAH6 | E-Value: 1.906e-66, PID: 43.82 | (dof zinc finger protein DOF2.4-like {ECO:0000313|... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |