XM_017379567.1

Resource Type: 
Polypeptide
Name: 
XM_017379567.1
Identifier: 
XM_017379567.1-protein
Sequence: 
MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILP
VFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKR
HGKSGLNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRP
QQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSS
LEMMATTSFKSEEEVTVGSLSSEGNFDGHCSSSETKVPAWLMSQTGRVME
TQAVVAQGGYDGGGYSVVCPHVDGGGGGDDMSFFAGNSSPLPYPFSLLGG
EF
Sequence Length: 
302
Sequence Checksum: 
206bcda4dc1d6fe17b6753694e9d2524
View location in JBrowse: 
DCARv2_Chr2:28200794..28202164-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017379567.1, derives from mRNA, XM_017379567.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVP9 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434} (Fragment))

HSP 1 Score: 335.495 bits (859), Expect = 3.744e-112
Identity = 191/336 (56.85%), Postives = 232/336 (69.05%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKS---GLNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIG--EKKRRLM----TVSSSSNSSHSSLEMMATTSFKSEEEVTVGSLSS-EGNF--DGHCSSS---ETKVPAWLMSQT---GRVMETQAVVAQGGYDG-----GGYSVVCPHVDG-----GGGGDDMSFFAG------NSSPLPYPFSLLGGEF 302
            M+  N+IAPFV+KTYQMV+DPTTD LITWGRANNSFIVV+PL+FS R+LPV+FKHNNFSSF+RQLNTYGFKKVDPDRWEFANEWFLRGQ  +LKNI RK+H      G+    ++++DE++V EIARLK EQK L+ E+E M KRLEATERRP+QMMAFLYKVVEDPEI+ RMML+K+RTR  G  EKKRRLM    + S SS+SS SS  +  T S KSEEE  + ++SS E NF  D  C SS   +T   AWL  +    GR + + A+ +           GG+    P ++        GG D ++F G       S P PYPFSLLGG F
Sbjct:   39 MEANNIIAPFVLKTYQMVSDPTTDGLITWGRANNSFIVVDPLDFSHRLLPVYFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKHLLKNIVRKKHSSRINYGVQHKHEEDDDEEIVMEIARLKQEQKALEQELEDMNKRLEATERRPEQMMAFLYKVVEDPEILPRMMLEKERTRARGLTEKKRRLMISSSSPSLSSSSSPSSSRVAVTNSVKSEEEEGISAISSPETNFDIDTFCRSSASPDTPSTAWLSQRQLIMGRPLISPAIPSPASTTSSAAAIGGFMTASPPMNSISGYDNSGGGDTNYFGGMAAGVEASCPPPYPFSLLGGGF 374
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A077 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})

HSP 1 Score: 328.561 bits (841), Expect = 3.190e-110
Identity = 185/326 (56.75%), Postives = 229/326 (70.25%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGK---SGLNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSEEE---VTVGSLSS----EGNF--DGHCSSS---ETKVPAWLMSQTGRVMETQAVVAQGGYDGGGYSVVCPHVDG----GGGGDDMSFFAGNSS-----PLPYPFSLLGGEF 302
            M+  N+IAPFV+KTYQMV+DPTTD LITWGRANNSFIVV+PL+FSQ++LPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ  +L NI R++H +   +G +K  +D++DE++  EIARLK EQ+ L+ E+ GM KRLEATE RPQQMMAFL+KVVEDPEI+ RMML+K+R+R + EKKRRLM  S SS+SS SS     T S KSEEE    T+G LS+    E NF  D  C SS   +T   AWL  +  ++M             GG+S + P ++        G D S F G ++     P PYPFSLLGG F
Sbjct:    1 MEVNNIIAPFVIKTYQMVSDPTTDSLITWGRANNSFIVVDPLDFSQKLLPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLNNIVRRKHSRINYAGQHKHHEDDDDEEIFMEIARLKQEQRTLEQELAGMNKRLEATEMRPQQMMAFLHKVVEDPEILPRMMLEKERSRGLTEKKRRLMISSPSSSSSPSSSRAAITNSVKSEEEEEDTTLGGLSALSSPEINFDIDNFCRSSASPDTPSTAWLSQR--QIM-------------GGFSPLSPPMNSVSEYDDRGGDTSNFGGMAAAVEERPPPYPFSLLGGGF 311
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9ILM2 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})

HSP 1 Score: 323.553 bits (828), Expect = 6.950e-108
Identity = 179/343 (52.19%), Postives = 231/343 (67.35%), Query Frame = 0
 
Query:    2 DDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG-------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSE---EEVTVGSLSSEG---NFDGHCSSS----ETKVPA--WL-----------------MSQTGRVMETQAVVAQGGYDGGGYSVVCPHVDGGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            ++ N++APFV+K YQMV+DPTTD LI+WGRANNSFIV++PL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LKNI R++H  +        +N   +D +DED++ EIARLK EQK L+ E+EGM KRLEATERRPQQMMAF+YKVVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++ S  ++   +T   KSE   EE ++G +SS     N D  C SS    E+ + A  WL                  S    +  T AV+ QG     GY        GG  GD +++F   ++     P P YPFSLLGG F
Sbjct:    6 NNNNIVAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHSSNNKGSSYMQVNIKGEDFDDEDIIMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSPSGMAISSTSTI-IKSEVVHEEGSIGVISSPETVFNVDKFCQSSPSPDESDINAIGWLDQVNYGLAVAGPSPFTTGSMGAGIGATVAVLPQGNSTVIGY--------GGDWGDHINYFGEMAAGVEDRPRPSYPFSLLGGGF 339
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0N7DKH1 ((Heat shock transcription factor C1 {ECO:0000313|EMBL:AKV56417.1}))

HSP 1 Score: 323.553 bits (828), Expect = 7.584e-108
Identity = 179/343 (52.19%), Postives = 231/343 (67.35%), Query Frame = 0
 
Query:    2 DDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG-------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSE---EEVTVGSLSSEG---NFDGHCSSS----ETKVPA--WL-----------------MSQTGRVMETQAVVAQGGYDGGGYSVVCPHVDGGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            ++ N++APFV+K YQMV+DPTTD LI+WGRANNSFIV++PL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LKNI R++H  +        +N   ++ +DED++ EIARLK EQK L+ E+EGM KRLEATERRPQQMMAF+YKVVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++ S  ++   +T   KSE   EE ++G +SS     N D  C SS    E+ + A  WL                  S    +  T AV+ QG     GY        GG  GD M++F   ++     P P YPFSLLGG F
Sbjct:    6 NNNNIVAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHSSNNKGSSYMQVNIKGEEFDDEDIIMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSPSGMAISSTSTI-IKSEVVHEEGSIGVISSPETVFNVDKFCQSSPSPDESDINAIGWLDQVNYGLAVAGPSPFTTGSMGAGIGATVAVLPQGNSTVIGY--------GGDWGDHMNYFGEMAAGVEDRPRPSYPFSLLGGGF 339
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2R006 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})

HSP 1 Score: 322.783 bits (826), Expect = 1.145e-107
Identity = 183/331 (55.29%), Postives = 224/331 (67.67%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSGLNKDDDDE--EDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRR-IGEKKRRLMT--VSSSSNSSHSSLEMMATTSFKSEEE------VTVGSLSSEG-NFDGHCSSS----ETKVPAWLMSQ--TGRVMETQAVVAQGGYDG-GGYSVVCPHVDG----GGGGDDMSFFAGN------SSPLPYPFSLLGGEF 302
            M+  NVIAPF++KTYQMVNDPTTD LITWGRANNSFIVV+PL+FSQRILP +FKHNNFSSF+RQLNTYGF+KVDPD+WEFANEWFLRGQ  +L NI RK+H +S   +  ++E  EDEDLV EIARLK EQK ++ E+EGM KRLEATE+RPQQMMAFL+KV EDP+I+  +ML ++RTR+ I EKKRRLM    SSSS+ + ++     T+S K+E+E      V + S  + G   +  C  S    ET+ PAWL+     GR    Q        +G G    V P   G    G  G  +S+FA        S P PYPFSLLGG F
Sbjct:    1 MEGYNVIAPFIMKTYQMVNDPTTDSLITWGRANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLVNIVRKKHNRSSYTQGKNEELVEDEDLVMEIARLKKEQKVMEDELEGMKKRLEATEKRPQQMMAFLHKVAEDPDILPNLMLQRERTRQLISEKKRRLMISSTSSSSSGTVAATTTTTTSSIKTEDEDEGAIGVVISSSPNTGFKIENLCEQSSPSPETQTPAWLIQSEVMGRSQIGQEPFGCSAMNGIGNNMAVSPLESGVLGYGNSGGQISYFAEMAAGMEVSPPTPYPFSLLGGGF 331
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5J8Q8 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})

HSP 1 Score: 322.013 bits (824), Expect = 1.954e-107
Identity = 183/333 (54.95%), Postives = 232/333 (69.67%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSE---EEVTVGSLSSEG---NFDGHCSSS--ETKVPA--WLMSQTGRVMETQAVVAQGGYDGGGYS---VVCPHVD------GGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            M+  N+IAPFV+KTYQMV+DP TD LI+WGRANNSFIVVNPL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LK+I R++HG +       +N   +D + ED++ EIARLK EQK ++LE++GM KRLEATERRPQQMMAF+Y+VVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++SS  +L   A+T  KSE   EE +VG +SS     + D  C SS  E+ + A  WL           A  +  G  G G      V P  D      GG  GD M++F   ++     P P YPFSLLGG F
Sbjct:    1 MEANNIIAPFVLKTYQMVSDPATDSLISWGRANNSFIVVNPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKSIVRRKHGPNKGSSYMQVNTKGEDFDGEDIIMEIARLKQEQKAVELELDGMNKRLEATERRPQQMMAFIYQVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSSSGMALS-GASTIIKSEVASEEGSVGVISSPETVFDVDKFCQSSPDESNINAIGWLDQVNYGFAVAGASPSAAGSMGAGIGTTVAVLPQGDSSVIGYGGDWGDHMNYFGEMAAGVEDRPRPSYPFSLLGGGF 332
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835J3J3 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9662520.1}))

HSP 1 Score: 320.472 bits (820), Expect = 1.036e-106
Identity = 180/333 (54.05%), Postives = 232/333 (69.67%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSE---EEVTVGSLSSEG---NFDGHCSSS--ETKVPA--WLMSQTGRVMETQAVVAQGGYDGGGYS---VVCPHVD------GGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            M+  N+IAPFV+KTYQMV+DP TD LI+WGRANNSFIVVNPL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LK+I R++HG +       +N   +D +DED++ EIARLK EQK ++ E++GM KRLEATERRPQQMMAF+Y+VVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++SS  ++   A+T  KSE   EE +VG +SS     + D  C SS  E+ + A  WL              +  G  G G+     V P  +      GG  GD M++F   ++     P P YPFSLLGG F
Sbjct:    1 MEANNIIAPFVLKTYQMVSDPATDSLISWGRANNSFIVVNPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKSIVRRKHGTNKGSSYMQVNTKGEDCDDEDIIMEIARLKQEQKAVERELDGMNKRLEATERRPQQMMAFIYQVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSSSGMAIS-SASTIIKSEVVNEEGSVGVISSPETVFDVDKFCQSSPDESNINAIGWLDQANYGCAVAGPSPSTAGSMGAGFGTTVAVLPQGNKSVIGYGGDWGDHMNYFGEMAAGVEDRPRPSYPFSLLGGGF 332
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0U3IZH5 ((Transcription factor HsfC1a {ECO:0000313|EMBL:ALV82485.1}))

HSP 1 Score: 318.931 bits (816), Expect = 3.627e-106
Identity = 178/331 (53.78%), Postives = 215/331 (64.95%), Query Frame = 0
 
Query:    5 NVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG----LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSEEE---VTVGSLSSEGNFDGHCSSSETKVPAWLMSQTGRVMETQAVVAQGGYDG---------------GGYSVVCPHVDG------GGGGDDMSFFAG-----NSSPLPYPFSLLGGEF 302
            N+IAPFV+KTYQMVND +TD LITWGRANNSFIV +PL+FSQRILP +FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LKNI RK+H   G    L +   ++ DE+++ EI RLK EQK L+ E+EGMTKRLEATERRPQQMMAFLYKVVEDPE+I  MM++K+R R++GEKKRRL+       S+ SS     T S KSEEE    TVG +SS         S +T  PAW+     R M    +VAQ  Y                 G ++ + P  +             +S+F        + PLPYPFSLL G F
Sbjct:    7 NIIAPFVMKTYQMVNDSSTDALITWGRANNSFIVFDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQRQLLKNIVRKKHSSCGRSSFLQQAKLEDGDEEILAEIERLKHEQKSLEEELEGMTKRLEATERRPQQMMAFLYKVVEDPELIPTMMMEKERRRQLGEKKRRLLI-----QSTSSSSGTAGTASVKSEEEEDGSTVGIISSPETLSHSSPSPDTSTPAWV---KPRQMMGWPLVAQQPYPLAAIPSPIYSGSVTGLGHFNTMSPPPENTISSYKSSDSGQLSYFTEMEDGVETRPLPYPFSLLEGGF 329
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QKK5 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})

HSP 1 Score: 318.931 bits (816), Expect = 5.211e-106
Identity = 178/331 (53.78%), Postives = 224/331 (67.67%), Query Frame = 0
 
Query:    5 NVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG-------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKS--EEEVTVGSLSSEG---NFDGHCSSS----ETKVPA--WL-MSQTGRVMETQAVVAQG--GYDGGGYSVVCPHVD------GGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            N++APFV+K YQMV+DPTTD LI+WGRANNSFIV++PL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LKNI R++H  S        +N   +D +DED++ EIARLK EQK L+ E+EGM KRLEATERRPQQMMAF+YKVVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++ S  ++   +T        EE +VG +SS     N D  C SS    E+ + A  WL     G  M   +    G  G   G    V P  +      GG  GD M+ F   ++     P P YPFSLLGG F
Sbjct:    9 NIVAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNIVRRKHSSSNKGSSYMQVNIKGEDFDDEDIIMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSPSGMAISSSSTIIKSEVVHEEGSVGVISSPETVFNVDKFCQSSPSPDESDINAIGWLDQVNYGLAMAGPSPFTTGSMGAGIGATVAVLPQGNSTVIGYGGDWGDHMNCFGEMAAGVEDRPRPSYPFSLLGGGF 339
[Close]
BLAST of XM_017379567.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A836DFB4 ((Heat shock transcription factor {ECO:0000313|EMBL:KAG5225651.1}))

HSP 1 Score: 318.546 bits (815), Expect = 5.555e-106
Identity = 181/333 (54.35%), Postives = 231/333 (69.37%), Query Frame = 0
 
Query:    1 MDDCNVIAPFVVKTYQMVNDPTTDDLITWGRANNSFIVVNPLEFSQRILPVFFKHNNFSSFIRQLNTYGFKKVDPDRWEFANEWFLRGQTQILKNIARKRHGKSG------LNKDDDDEEDEDLVTEIARLKLEQKELDLEVEGMTKRLEATERRPQQMMAFLYKVVEDPEIISRMMLDKDRTRRIGEKKRRLMTVSSSSNSSHSSLEMMATTSFKSE---EEVTVGSLSSEG---NFDGHCSSS--ETKVPA--WLMSQTGRVMETQAVVAQGGYDGGGYS---VVCPHVD------GGGGGDDMSFFAGNSS-----PLP-YPFSLLGGEF 302
            M+  ++IAPFV+KTYQMV+DP TD LI+WGRANNSFIVVNPL+FSQRILPV+FKHNNFSSF+RQLNTYGF+KVDPDRWEFANEWFLRGQ Q+LK+I R++HG +       +N   +D + ED++ EIARLK EQK ++LE++GM KRLEATERRPQQMMAF+Y+VVEDP+++ RM+L+K+RTR+I +KK+RLM  SS+++SS  +L   A+T  KSE   EE +VG +SS     + D  C SS  E+ + A  W            A  +  G  G G      V P  D      GG  GD M++F   ++     P P YPFSLLGG F
Sbjct:    1 MEANHIIAPFVLKTYQMVSDPATDSLISWGRANNSFIVVNPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKSIVRRKHGPNKGSSCMQVNTKGEDFDGEDIIMEIARLKQEQKAVELELDGMNKRLEATERRPQQMMAFIYQVVEDPDLLPRMILEKERTRQIKDKKQRLMISSSATSSSGMALS-GASTIIKSEVASEEGSVGVISSPETVFDVDKFCQSSPDESNINAIGWFDQVNYGCAVAGASPSAAGSLGAGIGTTVAVLPQGDSSVIGYGGDWGDHMNYFGEMAAGVEDRPRPSYPFSLLGGGF 332
Match NameStatsDescription
A0A5B6YVP9E-Value: 3.744e-112, PID: 56.85HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
A0A5J5A077E-Value: 3.190e-110, PID: 56.75HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
B9ILM2E-Value: 6.950e-108, PID: 52.19HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
A0A0N7DKH1E-Value: 7.584e-108, PID: 52.19(Heat shock transcription factor C1 {ECO:0000313|E... [more]
A0A7N2R006E-Value: 1.145e-107, PID: 55.29HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
A0A5N5J8Q8E-Value: 1.954e-107, PID: 54.95HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
A0A835J3J3E-Value: 1.036e-106, PID: 54.05(Uncharacterized protein {ECO:0000313|EMBL:KAF9662... [more]
A0A0U3IZH5E-Value: 3.627e-106, PID: 53.78(Transcription factor HsfC1a {ECO:0000313|EMBL:ALV... [more]
A0A4U5QKK5E-Value: 5.211e-106, PID: 53.78HSF_DOMAIN domain-containing protein {ECO:0000259|... [more]
A0A836DFB4E-Value: 5.555e-106, PID: 54.35(Heat shock transcription factor {ECO:0000313|EMBL... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.