Resource Type:
Polypeptide
Name:
XM_017376453.1
Identifier:
XM_017376453.1-protein
Sequence:
MKGGEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRL
HFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGL
TKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLV
VGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETT
QMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMAT
FIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGL
LLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDH
EEERPLV
Sequence Length:
357
Sequence Checksum:
d4c39f336597f2d702d88d7cb9b76570
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017376453.1, derives from mRNA, XM_017376453.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CE85 ((Putative UDP-galactose/UDP-glucose transporter 2-like {ECO:0000313|EMBL:MPA78774.1}))
HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 311/354 (87.85%), Postives = 333/354 (94.07%), Query Frame = 0
Match: A0A5B7CE85 ((Putative UDP-galactose/UDP-glucose transporter 2-like {ECO:0000313|EMBL:MPA78774.1}))
HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 311/354 (87.85%), Postives = 333/354 (94.07%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
EDQARSLFGISLSDRPKW+QFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTFIQGFVYL L+Y QGFT K+MVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP HEY+SALLLVVGLILFTLADANTSPNFS+IGV+M+SGALVMD+FLGNLQEAIF +NPETTQMEMLFCSTVVGLPFLIPPMILTGELF AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQH SGLLLI+MGIILK+LPENKA TRIP+SNV KH S ++EEK+ + ++D +HEE +PLV
Sbjct: 3 NEDQARSLFGISLSDRPKWKQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFIQGFVYLVLIYFQGFTIKKMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPVHEYVSALLLVVGLILFTLADANTSPNFSIIGVLMISGALVMDSFLGNLQEAIFNINPETTQMEMLFCSTVVGLPFLIPPMILTGELFKAWNSCSQHPYVYGVLVFEAMATFIGQLSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHCSGLLLIAMGIILKLLPENKAATRIPVSNVVAKHGKSSSKEEKRLIVSKDDEEHEEIKPLV 356
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZW91 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8522339.1}))
HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 309/353 (87.54%), Postives = 335/353 (94.90%), Query Frame = 0
Match: A0A5J4ZW91 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8522339.1}))
HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 309/353 (87.54%), Postives = 335/353 (94.90%), Query Frame = 0
Query: 5 EDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
EDQARSLFGISLSDRP WQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYLAL+YLQGFT KQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP HEY+SALLLVVGLILFTLADANTSPNFS+IGV+M+S ALVMD+FLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSC+QHPYVYGVLVFEAMATF+GQ+SVLSLIAIFGAATTAM+TTARKAVTLLLSYLIFTKP+TEQHGSGLLL++MGI+LK+LP+NKA RIP+SN K+ Y++EE K V +ED +HEE++PL+
Sbjct: 4 EDQARSLFGISLSDRPIWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLALIYLQGFTVKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPAHEYISALLLVVGLILFTLADANTSPNFSIIGVLMISSALVMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCSQHPYVYGVLVFEAMATFVGQISVLSLIAIFGAATTAMVTTARKAVTLLLSYLIFTKPMTEQHGSGLLLMAMGIMLKLLPDNKAAPRIPVSNAVAKNGKYYSKEENKVVDSKEDEEHEEKKPLI 356
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SX05 ((UDP-galactose/UDP-glucose transporter 2 {ECO:0000313|RefSeq:XP_011072101.1}))
HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 299/353 (84.70%), Postives = 330/353 (93.48%), Query Frame = 0
Match: A0A6I9SX05 ((UDP-galactose/UDP-glucose transporter 2 {ECO:0000313|RefSeq:XP_011072101.1}))
HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 299/353 (84.70%), Postives = 330/353 (93.48%), Query Frame = 0
Query: 5 EDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
EDQ RSLFGISL+DRP WQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYL L+YLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP HEY+SA+LLV+GLILFTLADANTSPNFSVIG+VM+ GALVMD+FLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFL+PPMILTGELF AW SC++HPYVYGVLVFEAMATF+GQVSVLSLIAIFGAATTAMITTARKAVTLLLSYL+FTKPLTEQHGSGLLLI+MGIILK++P++K P R+ +S+ ++ E S +E +K ++ E VD EE++PLV
Sbjct: 4 EDQGRSLFGISLTDRPTWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPIHEYVSAILLVIGLILFTLADANTSPNFSVIGIVMIVGALVMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLLPPMILTGELFKAWNSCSEHPYVYGVLVFEAMATFVGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLLFTKPLTEQHGSGLLLIAMGIILKLVPDSKPPNRVTISHSTSREEKSRPKEARKRMEDGESVDSEEKQPLV 356
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7H2C4 ((Uncharacterized protein {ECO:0000313|EMBL:TXG50997.1}))
HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 295/353 (83.57%), Postives = 324/353 (91.78%), Query Frame = 0
Match: A0A5C7H2C4 ((Uncharacterized protein {ECO:0000313|EMBL:TXG50997.1}))
HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 295/353 (83.57%), Postives = 324/353 (91.78%), Query Frame = 0
Query: 5 EDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
E+QARSLFGISLS+RPKWQQFLICSSGFFFGYL+NGICEEYVYNRL FSYGWYFTF+QGFVYL L+YLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLVVGLILFTLADA TSPNFS+IG++M+SGALVMD+FLGNLQEAIFTMNP+TTQMEMLFCSTVVGLPFL+ PMILTGELFTAW SC+QH Y+YGVLVFEAMATF+GQVSVLSLIAIFGAA TAMITTARK VTLLLSYLIFTKPLTE+HG+GLLLI+MG+ILKMLPENK PTR P K+ S T+ E++ + E+ +EE + LV
Sbjct: 4 EEQARSLFGISLSNRPKWQQFLICSSGFFFGYLINGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVHEYISALLLVVGLILFTLADAQTSPNFSIIGILMISGALVMDSFLGNLQEAIFTMNPDTTQMEMLFCSTVVGLPFLLVPMILTGELFTAWNSCSQHLYIYGVLVFEAMATFVGQVSVLSLIAIFGAANTAMITTARKGVTLLLSYLIFTKPLTERHGTGLLLIAMGVILKMLPENKVPTRNPNFRGIGKNRNSITK-EEEEESLVENGQNEENKLLV 355
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059CGU3 ((Uncharacterized protein {ECO:0000313|EMBL:KCW77612.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 300/354 (84.75%), Postives = 328/354 (92.66%), Query Frame = 0
Match: A0A059CGU3 ((Uncharacterized protein {ECO:0000313|EMBL:KCW77612.1}))
HSP 1 Score: 607.831 bits (1566), Expect = 0.000e+0
Identity = 300/354 (84.75%), Postives = 328/354 (92.66%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGISLSDRP+WQQFLICS+GFFFGYLVNG+CEEYVYNRL FSYGWYFTFIQGFVYL L+Y QGFTTKQMVNPWK+YVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYP HEY+SALLLVVGLI+FTLADA TSPNFS+IGV+M++GAL+ D+FLGNLQEAIFT+NP+TTQMEMLFCSTVVGLPFL+PPMILTGELF AW SC+QHPYVYGVL+FEAMATF+GQVSVLSLIAIFGAATTAM+TTARKAVTLLLSYLIFTKP+TEQHG+GLLLI+MGIILKMLPENK P+R M+NV +KHE S R + + V E EE RPLV
Sbjct: 3 GEDQARSLFGISLSDRPRWQQFLICSAGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLVLIYFQGFTTKQMVNPWKSYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPAHEYISALLLVVGLIMFTLADAQTSPNFSMIGVLMITGALIFDSFLGNLQEAIFTLNPDTTQMEMLFCSTVVGLPFLVPPMILTGELFKAWNSCSQHPYVYGVLIFEAMATFVGQVSVLSLIAIFGAATTAMVTTARKAVTLLLSYLIFTKPMTEQHGTGLLLIAMGIILKMLPENKQPSRGTMANVGSKHEKSPHRGQSRLVDNGE--AEEEGRPLV 354
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2JL64 ((Uncharacterized protein {ECO:0000313|EMBL:TYH55232.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Match: A0A5D2JL64 ((Uncharacterized protein {ECO:0000313|EMBL:TYH55232.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGI L+DRPKWQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYL L+ LQGFTTK+MVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLV+GLILFTLADA T PNFS+IG++M+ GALVMDAFLGN QEAIFTMNPETTQMEMLFCSTVVG+PFL+ PMILTGEL AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAA TAMITTARKAVTLLLSY+IFTKPLTEQHGSGLLLI+MGIILKMLP++K IP SNV +H + EE ++V++++ EE++ LV
Sbjct: 3 GEDQARSLFGIPLTDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLILIRLQGFTTKKMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTYPNFSIIGIIMILGALVMDAFLGNFQEAIFTMNPETTQMEMLFCSTVVGIPFLVVPMILTGELVRAWNSCSQHPYVYGVLVFEAMATFIGQMSVLSLIAIFGAAVTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPAPWIPTSNVNARHHRETSSEEVESVELQD----EEKKSLV 352
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5Q7K0 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2014183.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Match: A0A5J5Q7K0 ((Uncharacterized protein {ECO:0000313|EMBL:KAB2014183.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGI L+DRPKWQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYL L+ LQGFTTK+MVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLV+GLILFTLADA T PNFS+IG++M+ GALVMDAFLGN QEAIFTMNPETTQMEMLFCSTVVG+PFL+ PMILTGEL AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAA TAMITTARKAVTLLLSY+IFTKPLTEQHGSGLLLI+MGIILKMLP++K IP SNV +H + EE ++V++++ EE++ LV
Sbjct: 3 GEDQARSLFGIPLTDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLILIRLQGFTTKKMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTYPNFSIIGIIMILGALVMDAFLGNFQEAIFTMNPETTQMEMLFCSTVVGIPFLVVPMILTGELVRAWNSCSQHPYVYGVLVFEAMATFIGQMSVLSLIAIFGAAVTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPAPWIPTSNVNARHHRETSSEEVESVELQD----EEKKSLV 352
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8I3A6 ((UDP-galactose/UDP-glucose transporter 2-like {ECO:0000313|RefSeq:XP_016670692.1, ECO:0000313|RefSeq:XP_016670693.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Match: A0A1U8I3A6 ((UDP-galactose/UDP-glucose transporter 2-like {ECO:0000313|RefSeq:XP_016670692.1, ECO:0000313|RefSeq:XP_016670693.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGI L+DRPKWQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYL L+ LQGFTTK+MVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLV+GLILFTLADA T PNFS+IG++M+ GALVMDAFLGN QEAIFTMNPETTQMEMLFCSTVVG+PFL+ PMILTGEL AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAA TAMITTARKAVTLLLSY+IFTKPLTEQHGSGLLLI+MGIILKMLP++K IP SNV +H + EE ++V++++ EE++ LV
Sbjct: 3 GEDQARSLFGIPLTDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLILIRLQGFTTKKMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTYPNFSIIGIIMILGALVMDAFLGNFQEAIFTMNPETTQMEMLFCSTVVGIPFLVVPMILTGELVRAWNSCSQHPYVYGVLVFEAMATFIGQMSVLSLIAIFGAAVTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPAPWIPTSNVNARHHRETSSEEVESVELQD----EEKKSLV 352
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2BE66 ((Uncharacterized protein {ECO:0000313|EMBL:TYG54878.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Match: A0A5D2BE66 ((Uncharacterized protein {ECO:0000313|EMBL:TYG54878.1}))
HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 292/354 (82.49%), Postives = 322/354 (90.96%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGI L+DRPKWQQFLICSSGFFFGYLVNGICEEYVYNRL FSYGWYFTF+QGFVYL L+ LQGFTTK+MVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLV+GLILFTLADA T PNFS+IG++M+ GALVMDAFLGN QEAIFTMNPETTQMEMLFCSTVVG+PFL+ PMILTGEL AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAA TAMITTARKAVTLLLSY+IFTKPLTEQHGSGLLLI+MGIILKMLP++K IP SNV +H + EE ++V++++ EE++ LV
Sbjct: 3 GEDQARSLFGIPLTDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQGFVYLILIRLQGFTTKKMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTYPNFSIIGIIMILGALVMDAFLGNFQEAIFTMNPETTQMEMLFCSTVVGIPFLVVPMILTGELVRAWNSCSQHPYVYGVLVFEAMATFIGQMSVLSLIAIFGAAVTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPAPWIPTSNVNARHHRETSSEEVESVELQD----EEKKSLV 352
BLAST of XM_017376453.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2TMA0 ((Uncharacterized protein {ECO:0000313|EMBL:TYI66319.1}))
HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 291/354 (82.20%), Postives = 322/354 (90.96%), Query Frame = 0
Match: A0A5D2TMA0 ((Uncharacterized protein {ECO:0000313|EMBL:TYI66319.1}))
HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 291/354 (82.20%), Postives = 322/354 (90.96%), Query Frame = 0
Query: 4 GEDQARSLFGISLSDRPKWQQFLICSSGFFFGYLVNGICEEYVYNRLHFSYGWYFTFIQGFVYLALLYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPPHEYLSALLLVVGLILFTLADANTSPNFSVIGVVMVSGALVMDAFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPFLIPPMILTGELFTAWKSCAQHPYVYGVLVFEAMATFIGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPLTEQHGSGLLLISMGIILKMLPENKAPTRIPMSNVKNKHETSYTREEKKAVQIREDVDHEEERPLV 357
GEDQARSLFGI L+DRPKWQQFLICSSGFFFGY+VNGICEEYVYNRL FSYGWYFTF+QGFVYL L+ LQGFTTK+MVNPWKTYVKLSAVLMGSHGLTKGSLA+LNYPAQIMFKSTKVLPVM+MGAFIPGLRRKYP HEY+SALLLV+GLILFTLADA T PNFS+IG++M+ GALVMDAFLGN QEAIFTMNPETTQMEMLFCSTVVG+PFL+ PMILTGEL AW SC+QHPYVYGVLVFEAMATFIGQ+SVLSLIAIFGAA TAMITTARKAVTLLLSY+IFTKPLTEQHGSGLLLI+MGIILKMLP++K IP SNV +H + EE ++V++++ EE++ LV
Sbjct: 3 GEDQARSLFGIPLTDRPKWQQFLICSSGFFFGYIVNGICEEYVYNRLQFSYGWYFTFVQGFVYLILIRLQGFTTKKMVNPWKTYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISALLLVIGLILFTLADAQTYPNFSIIGIIMILGALVMDAFLGNFQEAIFTMNPETTQMEMLFCSTVVGIPFLVVPMILTGELVRAWNSCSQHPYVYGVLVFEAMATFIGQMSVLSLIAIFGAAVTAMITTARKAVTLLLSYMIFTKPLTEQHGSGLLLIAMGIILKMLPDSKPAPWIPTSNVNARHHRETSSEEVESVELQD----EEKKSLV 352
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CE85 | E-Value: 0.000e+0, PID: 87.85 | (Putative UDP-galactose/UDP-glucose transporter 2-... [more] |
| A0A5J4ZW91 | E-Value: 0.000e+0, PID: 87.54 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8522... [more] |
| A0A6I9SX05 | E-Value: 0.000e+0, PID: 84.70 | (UDP-galactose/UDP-glucose transporter 2 {ECO:0000... [more] |
| A0A5C7H2C4 | E-Value: 0.000e+0, PID: 83.57 | (Uncharacterized protein {ECO:0000313|EMBL:TXG5099... [more] |
| A0A059CGU3 | E-Value: 0.000e+0, PID: 84.75 | (Uncharacterized protein {ECO:0000313|EMBL:KCW7761... [more] |
| A0A5D2JL64 | E-Value: 0.000e+0, PID: 82.49 | (Uncharacterized protein {ECO:0000313|EMBL:TYH5523... [more] |
| A0A5J5Q7K0 | E-Value: 0.000e+0, PID: 82.49 | (Uncharacterized protein {ECO:0000313|EMBL:KAB2014... [more] |
| A0A1U8I3A6 | E-Value: 0.000e+0, PID: 82.49 | (UDP-galactose/UDP-glucose transporter 2-like {ECO... [more] |
| A0A5D2BE66 | E-Value: 0.000e+0, PID: 82.49 | (Uncharacterized protein {ECO:0000313|EMBL:TYG5487... [more] |
| A0A5D2TMA0 | E-Value: 0.000e+0, PID: 82.20 | (Uncharacterized protein {ECO:0000313|EMBL:TYI6631... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |