XM_017378072.1

Resource Type: 
Polypeptide
Name: 
XM_017378072.1
Identifier: 
XM_017378072.1-protein
Sequence: 
MVEICWELKKDDQNNFENGEREFRNMRRIAQAVDIKLLGSLSRDDLKKIC
GENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYR
PAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIIL
GIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPR
IDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVD
TSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVV
DNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELE
ADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDE
KRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVGS
GFGAVGSGLSKAGKFMGRSITGQSTSKKSGTSTPVNSTQENGGAKPL
Sequence Length: 
497
Sequence Checksum: 
7cc4e3623a45c00a2a95c8649bad983f
View location in JBrowse: 
DCARv2_Chr2:29595090..29613470+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017378072.1, derives from mRNA, XM_017378072.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218Y443 ((synaptotagmin-4-like isoform X1 {ECO:0000313|RefSeq:XP_031399246.1, ECO:0000313|RefSeq:XP_031399254.1}))

HSP 1 Score: 829.706 bits (2142), Expect = 0.000e+0
Identity = 410/501 (81.84%), Postives = 454/501 (90.62%), Query Frame = 0
 
Query:   22 EFRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAV-GA---------------------VGSGIGAGVGMVGTGLGAGVGIVGSGFGAVGSGLSKAGKFMGRSITGQSTSKK---SGTSTPVNSTQENGGAKPL 497
             +R+ +RIA+A D+KLLGSL+RDDLKKICG+N+PEWISFPV+EQVKW+NKQLSKLWP+VADAAT +I+ESVEPLLEEYRP GITS+KFSKLSLG V PKIEGIRVQSLK+GQITMDIDFRWGGDPSIILG+EAAMVASIPIQLKDLQVFTVIRVIFQL +EIPCISAVVVALL+EPKPRIDYTLKA+GGSLTAIPGLSDMIDDTV++IVTDMLQWPHRIVVPIGG+PVDTSDLELKPQGKLT+TVVKAN+LKNMEMIGKSDPYVV+YIRPLFKVKTKVV+NNLNPVWD+TFELIAEDKETQ+L+ EVFD+DIGQDKRLGIAK PL ELEAD  +E +LRL+PSLDMLKIKDKKDRGT+T+KV+YH FNKEEQ  ALE+EKRILEERKKLKEAGVIGSTMDA+ GA                     VGSGIGAGVG+VGTG+GAG G VGSG GAVGSGLSKAGKFMGR+ITGQS++ K   SGT+TPVNS QENGGAKPL
Sbjct:   26 RYRSNKRIAKAADVKLLGSLTRDDLKKICGDNYPEWISFPVFEQVKWMNKQLSKLWPYVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGTVAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVHSIVTDMLQWPHRIVVPIGGIPVDTSDLELKPQGKLTVTVVKANDLKNMEMIGKSDPYVVVYIRPLFKVKTKVVENNLNPVWDQTFELIAEDKETQSLVVEVFDKDIGQDKRLGIAKWPLIELEADALQEKELRLLPSLDMLKIKDKKDRGTVTIKVVYHPFNKEEQLVALEEEKRILEERKKLKEAGVIGSTMDAIDGAASLVGSGFGMVGTGIGTGVGLVGSGIGAGVGLVGTGIGAGAGFVGSGLGAVGSGLSKAGKFMGRTITGQSSNHKKSSSGTTTPVNSAQENGGAKPL 526
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J6GVL6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF4386808.1}))

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 402/495 (81.21%), Postives = 450/495 (90.91%), Query Frame = 0
 
Query:   24 RNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAV-GA---------------------VGSGIGAGVGMVGTGLGAGVGIVGSGFGAVGSGLSKAGKFMGRSITGQSTSKKSGTSTPVNSTQENGGAKP 496
            R+ +RIA+AVDIKLLGSLSRDDLKKICG+NFPEWISFPV+EQVKWLNKQLSKLWP++ADA   +IKESVEPLLEEYRP GITS+KFSKLSLG V PKIEGIRVQS K+GQI MDIDF+WGGDPSIILG+EAAMVASIPIQLKDLQVFTVIRVIFQLT+EIPCISAVVVALLS+PKPRIDYTLKA+GGSLTA+PG+SDMIDDTVNTIVTDMLQWPHRIVVPIGG+PVDTSDLELKPQGKL+LTVVKAN LKNMEMIGKSDPYVV++IRPLFKVKTKV+DNNLNPVW++TFE+IAEDKETQ+LI EVFDQDIGQDKRLGIAK+PL ELEA+T KE +LRL+PSLD LK+KDKKDRGT+T+KVLYHEFNK+EQ  A+++EKRILEERKKLK  GVIGSTMDA+ GA                     VGSGIG GVGMVG+G+GAGVG+VGSG GAVGSGLSKAGKFMGR+ITGQS+++KSG++TPV+S QENGG KP
Sbjct:   28 RSTKRIAKAVDIKLLGSLSRDDLKKICGDNFPEWISFPVFEQVKWLNKQLSKLWPYIADAGEMVIKESVEPLLEEYRPPGITSLKFSKLSLGRVAPKIEGIRVQSHKKGQIIMDIDFKWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLTEEIPCISAVVVALLSDPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQWPHRIVVPIGGLPVDTSDLELKPQGKLSLTVVKANNLKNMEMIGKSDPYVVVHIRPLFKVKTKVIDNNLNPVWNQTFEMIAEDKETQSLIVEVFDQDIGQDKRLGIAKVPLIELEAETLKEFELRLLPSLDTLKVKDKKDRGTVTIKVLYHEFNKDEQLAAVDEEKRILEERKKLKAEGVIGSTMDALDGAASLVGSGVGMVGTGIGTGVGMVGSGIGTGVGMVGSGIGAGVGMVGSGLGAVGSGLSKAGKFMGRTITGQSSNRKSGSTTPVSSIQENGGVKP 522
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067H4Q1 ((Uncharacterized protein {ECO:0000313|EMBL:KDO85905.1}))

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 400/486 (82.30%), Postives = 446/486 (91.77%), Query Frame = 0
 
Query:   23 FRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVGS-----------GFGAVGSGLSKAGKFMGRSITGQSTSKKSGTSTPVNSTQENGGAKPL 497
            +R+ +RIA+A DIK+LGSL+RDDLKKICG+NFP WISFPVYEQVKWLNK+LSKLWPFVADAA  +IKESVEPLLEEYRP GITS+KFSKLSLGNV PKIEGIRVQSLK+GQITMDIDFRWGGDPSIILG+EAAMVASIPIQLKDLQVFTVIRVIFQL +EIPCISAVVVALLSEPKPRIDYTLKA+GGSLTAIPG++DMIDDTV++I+TDMLQWPHRIVVPIGG+PVDTS+LELKPQGK+ +T+VKAN LKNMEMIGKSDPY V++I+PLFKVKT VVDNNLNPVW++TFELIAEDKETQ+LIFEVFD+DIGQDKRLGI KLPL +LEADT KE +LRL+PSLDMLKIKDKKDRG+ITVKVLYHEFNKEEQ  ALE+EKR LEERKKLKEAGVIGSTMDA+    S +G+GVGMVGTG+GAG G+V +           GFGAVGSGLSKAGKFMGR+ITG S SK+SGT+TPVNS QENGGAKP+
Sbjct:   27 YRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVLYHEFNKEEQLSALEEEKRFLEERKKLKEAGVIGSTMDAIDGAASLVGSGVGMVGTGIGAGAGLVTAGVGTGVGLVGSGFGAVGSGLSKAGKFMGRTITGHS-SKRSGTTTPVNSVQENGGAKPV 511
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TXY7 ((Uncharacterized protein {ECO:0000313|EMBL:ESR58452.1}))

HSP 1 Score: 818.15 bits (2112), Expect = 0.000e+0
Identity = 400/486 (82.30%), Postives = 446/486 (91.77%), Query Frame = 0
 
Query:   23 FRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVGS-----------GFGAVGSGLSKAGKFMGRSITGQSTSKKSGTSTPVNSTQENGGAKPL 497
            +R+ +RIA+A DIK+LGSL+RDDLKKICG+NFP WISFPVYEQVKWLNK+LSKLWPFVADAA  +IKESVEPLLEEYRP GITS+KFSKLSLGNV PKIEGIRVQSLK+GQITMDIDFRWGGDPSIILG+EAAMVASIPIQLKDLQVFTVIRVIFQL +EIPCISAVVVALLSEPKPRIDYTLKA+GGSLTAIPG++DMIDDTV++I+TDMLQWPHRIVVPIGG+PVDTS+LELKPQGK+ +T+VKAN LKNMEMIGKSDPY V++I+PLFKVKT VVDNNLNPVW++TFELIAEDKETQ+LIFEVFD+DIGQDKRLGI KLPL +LEADT KE +LRL+PSLDMLKIKDKKDRG+ITVKVLYHEFNKEEQ  ALE+EKR LEERKKLKEAGVIGSTMDA+    S +G+GVGMVGTG+GAG G+V +           GFGAVGSGLSKAGKFMGR+ITG S SK+SGT+TPVNS QENGGAKP+
Sbjct:   27 YRSTKRIAKAADIKILGSLNRDDLKKICGDNFPIWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVLYHEFNKEEQLSALEEEKRFLEERKKLKEAGVIGSTMDAIDGAASLVGSGVGMVGTGIGAGAGLVTAGVGTGVGLVGSGFGAVGSGLSKAGKFMGRTITGHS-SKRSGTTTPVNSVQENGGAKPV 511
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4GQX5 ((synaptotagmin-5-like {ECO:0000313|RefSeq:XP_018846300.1}))

HSP 1 Score: 817.379 bits (2110), Expect = 0.000e+0
Identity = 402/498 (80.72%), Postives = 449/498 (90.16%), Query Frame = 0
 
Query:   23 FRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVGSG----------------------FGAVGSGLSKAGKFMGRSITGQST-SKKSGTSTPVNSTQENGGAKPL 497
            +R+ +R+A+AVDIKLLGSL+RDDL+KICGENFPEWISFP++EQVKWLNKQLSKLWPFVADAA  +IKESVEPLLEEYRP GITS+KFSKLSLGNV PKIEGIRVQSLKEGQITMDIDFRWGGDPSIILG EAA+VASIPIQLKDLQVFTV+RVIFQL +EIPCISAVVVALLSEPKPRI+Y LKA+GGSLTAIPGLSDMIDDTVN+IVTDMLQWPHRIVVPIGG+PVDTS+LELKPQG+LTLTVVKAN+LKNMEMIGKSDPYV++YIRPL+KVKT VV+NNLNPVW++TFELIAEDKETQ L+FEV D+DIGQDKRLGI KLPL ELEA++ KE  LRL+PSLDMLKIKDKKDRGTITVKVLYHEFNKEEQ  ALE+EKR+LEERKKLK+ GVIGSTMDA+    S +G+GVGMVGTG+GAGVG+VG+G                       GAVGSGLSKAGKFMGR+ITGQS+ S++SG++TPVNS QENGGAKPL
Sbjct:   27 YRSTKRVAKAVDIKLLGSLNRDDLRKICGENFPEWISFPLFEQVKWLNKQLSKLWPFVADAAEMVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGAEAALVASIPIQLKDLQVFTVVRVIFQLAEEIPCISAVVVALLSEPKPRIEYNLKAVGGSLTAIPGLSDMIDDTVNSIVTDMLQWPHRIVVPIGGMPVDTSELELKPQGRLTLTVVKANDLKNMEMIGKSDPYVIVYIRPLYKVKTNVVENNLNPVWNQTFELIAEDKETQFLVFEVCDKDIGQDKRLGIVKLPLIELEAESMKEFDLRLLPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQLIALEEEKRVLEERKKLKQEGVIGSTMDALDGAVSLVGSGVGMVGTGIGAGVGLVGTGIGAGVGLVGTGVGSGVGIVGSGLGAVGSGLSKAGKFMGRTITGQSSHSRRSGSTTPVNSVQENGGAKPL 524
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A059CJ19 ((Uncharacterized protein {ECO:0000313|EMBL:KCW78244.1}))

HSP 1 Score: 812.757 bits (2098), Expect = 0.000e+0
Identity = 402/498 (80.72%), Postives = 444/498 (89.16%), Query Frame = 0
 
Query:   22 EFRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGV----------------------GIVGSGFGAVGSGLSKAGKFMGRSITGQS-TSKKSGTSTPVNSTQENGGAKP 496
             +R+ +R A+AVDIK+LGSL+RDDLKKICGENFP+WISFPV+EQVKWLNKQLSKLWPF+A+AAT IIKESVEPLLE+YRP GITS+KFSKLSLG V PKIEGIRVQSLK+GQITMDIDFRWGGDPSIILG+EAA+VASIPIQLK+LQVFTV+RVIFQL +EIPCISAVVVALLSEPKPRIDYTLKA+GGSLTAIPGLSDMIDDTVN+IVTDMLQWPHRIVVPIGG+PVDTSDLELKPQGK+ +TVVKAN+LKNMEMIGKSDPYVV+YIRPLFKVKTKVVDNNLNPVW+++FELIAEDKETQ L  EVFDQDIGQDKRLGIAKLPL  L     KE +LRL+PSLDMLKIKDKKDRGT+T+K LY++FNKEEQ  ALE+EKRILEERKKLKEAGVIGSTMDA+      +G+GVG+VGTG+GAGV                      GIVGSGFGAVGSGLSKAGKFMGR+ITGQS  SKKSG STPVNS+QENGGAKP
Sbjct:   26 RYRSSKRTAKAVDIKVLGSLNRDDLKKICGENFPQWISFPVFEQVKWLNKQLSKLWPFIAEAATVIIKESVEPLLEDYRPPGITSLKFSKLSLGTVAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILGVEAALVASIPIQLKNLQVFTVVRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVNSIVTDMLQWPHRIVVPIGGIPVDTSDLELKPQGKINVTVVKANDLKNMEMIGKSDPYVVVYIRPLFKVKTKVVDNNLNPVWNQSFELIAEDKETQFLTVEVFDQDIGQDKRLGIAKLPLIGLAPGVEKEFELRLLPSLDMLKIKDKKDRGTVTIKALYYQFNKEEQLVALEEEKRILEERKKLKEAGVIGSTMDALDGAAGLVGSGVGLVGTGIGAGVGLVGTGIGAGVGVVGSGLGAGAGIVGSGFGAVGSGLSKAGKFMGRTITGQSGNSKKSGASTPVNSSQENGGAKP 523
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022QTL8 ((Uncharacterized protein {ECO:0000313|EMBL:EYU32022.1}))

HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0
Identity = 401/487 (82.34%), Postives = 451/487 (92.61%), Query Frame = 0
 
Query:   23 FRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGV-----------GMVGTGLGAGVGIVGSGFGAVGSGLSKAGKFMGRSITGQST-SKKSGTSTPVNSTQENGGAKPL 497
             R+ +R+A+AVDIKLL SLS++D+KKICGEN PEWISFPV+EQVKWLNKQLSKLWPFVADAA A+IKESVEPLLEEYRP GITS+KFSKLSLG V PKIEGIRVQSLKEGQITMDID RWGGDPSIIL +EAA+VASIPIQLKDL+VFTV+R IFQL+DEIPCISAVVVALL+EPKPRIDYTLKA+GGSLTA+PG+SDMIDDTVNTIVTDMLQWPHRIVVPIGG+PVDTSDLELKP GKL +T+ +AN+LKNME+IGKSDPYVVL+IRPLFKVKTKVV+NNLNPVW++TFELIAEDKETQ++IFEVFDQDIGQDKRLGIAKLPL EL A+T+KE++LRL+PSLDMLKIKDKKDRGT+T++VLYHEFNKEEQ  ALE+EKRILEERKKLKEAGVIGSTMDA+    S +G+GV           G+VG+GLGAGVGIVGSGFGAVGSGLSKAGKFMGR+ITGQS+ S+KSG++TPVN TQENGGAKPL
Sbjct:   27 HRSRKRVAKAVDIKLLSSLSKEDMKKICGENCPEWISFPVFEQVKWLNKQLSKLWPFVADAAEAVIKESVEPLLEEYRPPGITSLKFSKLSLGTVAPKIEGIRVQSLKEGQITMDIDLRWGGDPSIILAVEAALVASIPIQLKDLKVFTVVRAIFQLSDEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGVSDMIDDTVNTIVTDMLQWPHRIVVPIGGIPVDTSDLELKPVGKLAITITRANDLKNMELIGKSDPYVVLHIRPLFKVKTKVVENNLNPVWNQTFELIAEDKETQSVIFEVFDQDIGQDKRLGIAKLPLSELVAETSKEIELRLLPSLDMLKIKDKKDRGTLTIQVLYHEFNKEEQMAALEEEKRILEERKKLKEAGVIGSTMDALDGAASLVGSGVGMVGAGIGAGAGLVGSGLGAGVGIVGSGFGAVGSGLSKAGKFMGRTITGQSSASRKSGSATPVN-TQENGGAKPL 512
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4DNA4 ((synaptotagmin-5-like {ECO:0000313|RefSeq:XP_018808629.1}))

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 402/488 (82.38%), Postives = 446/488 (91.39%), Query Frame = 0
 
Query:   22 EFRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVG-----------SGFGAVGSGLSKAGKFMGRSITGQSTS-KKSGTSTPVNSTQENGGAKPL 497
             +R+ +RIA+AVDIKLLGSL+RDDLKKICG+NFPEWISFP++EQVKWLNKQLSKLWP++ADA   +I+ESVEPLLEEYRP GITS+KFSKLSLGNV PKIEGIRVQSLK+GQITMDIDFRWGGDPSIILG+EAA+VASIPIQLKDLQVFTVIRVIFQL ++IPCISAVVVALLSEPKPRIDY LKA+GGSLTAIPGLSDMIDDTVNTIV DMLQWPHRIVVPIGG+P+DTS+LELKPQGK+ LTVVKAN+LKNMEMIGKSDPYVV+YIRPLFKVKTKVV+NNLNPVW++TFELIAEDKETQ LI EVFD+DIGQDKRLGI KLPL ELEAD  KE+ LRL+PSLDMLKIKDKKDRGTIT+KVLYHEFNKEEQ  ALE+EKRILEERKKLK+AGVIGSTMDAV    S +G+G GMVGTGL AGVG+VG           SG GAVGSGL+KAGKFMGR+ITGQS+  ++SG++TPVNS QENGGAKPL
Sbjct:   26 RYRSTKRIAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPIFEQVKWLNKQLSKLWPYIADAGEMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILGVEAALVASIPIQLKDLQVFTVIRVIFQLAEDIPCISAVVVALLSEPKPRIDYNLKAVGGSLTAIPGLSDMIDDTVNTIVIDMLQWPHRIVVPIGGIPIDTSELELKPQGKIALTVVKANDLKNMEMIGKSDPYVVVYIRPLFKVKTKVVENNLNPVWNQTFELIAEDKETQTLILEVFDKDIGQDKRLGIVKLPLIELEADILKEIDLRLLPSLDMLKIKDKKDRGTITIKVLYHEFNKEEQLLALEEEKRILEERKKLKQAGVIGSTMDAVDGAASLVGSGAGMVGTGLSAGVGLVGSGIGTGVGIVGSGLGAVGSGLTKAGKFMGRTITGQSSHPRRSGSTTPVNSVQENGGAKPL 513
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498KHR1 ((Uncharacterized protein {ECO:0000313|EMBL:RXI06936.1}))

HSP 1 Score: 804.283 bits (2076), Expect = 0.000e+0
Identity = 400/509 (78.59%), Postives = 450/509 (88.41%), Query Frame = 0
 
Query:   23 FRNMRRIAQAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEGIRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDIGQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAV---------------------------------GAVGSGIGAGVGMVGTGLGAGVGIVGSGFGAVGSGLSKAGKFMGRSITGQ--STSKKSGTSTPVNSTQENGGAKP 496
            +R+ +R+A+AVDIKLLGSL+RDDLKKICG+NFPEWISFPV+EQVKWLNKQLSKLWP+VADAA  IIK+SVEPLLEEYRP GITS+KFSKLSLG V PKIEGIRVQSLK+GQITMDIDFRWGGDP+I+LG+EAA+VASIPIQLKDLQVFTV+RVIFQL +EIPCISAVVVALL+EPKPRIDYTLKA+GGSLTA+PG+SDMIDDTV +IVTDMLQWPHRIVVPIGGVPVDTS+LELKPQGKLTLTVVKAN+LKNMEMIGKSDPYVV+YIRPLFKVKTKV+DNNLNPVWD+TFELIAEDKETQ+LI EVFD+DIGQDKRLG+ KLPL ELEA+T KE++LRL PSL+MLKIK+KKDRGTIT+KV YHEFNKEEQ  ALE+EKRILEERKKLKEAGVIGSTMDA+                                 G VGSG+ AG G+VGTG+ +GVG+VGSG GAVGSGLSKAGKFMGR+ITGQ   + ++SG++TPVNS QENGGAKP
Sbjct:   27 YRSTKRVAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPVFEQVKWLNKQLSKLWPYVADAAEIIIKDSVEPLLEEYRPPGITSLKFSKLSLGTVAPKIEGIRVQSLKKGQITMDIDFRWGGDPNIVLGVEAALVASIPIQLKDLQVFTVVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVESIVTDMLQWPHRIVVPIGGVPVDTSELELKPQGKLTLTVVKANDLKNMEMIGKSDPYVVVYIRPLFKVKTKVIDNNLNPVWDQTFELIAEDKETQSLILEVFDEDIGQDKRLGVTKLPLIELEAETPKEIELRLQPSLNMLKIKEKKDRGTITIKVFYHEFNKEEQLIALEEEKRILEERKKLKEAGVIGSTMDALDGAASVVGSGVGMVGSGVTAGAGLVGSGVTAGAGLVGSGVTAGAGLVGTGVNSGVGMVGSGLGAVGSGLSKAGKFMGRTITGQSSHSRRRSGSTTPVNSVQENGGAKP 535
[Close]
BLAST of XM_017378072.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A835IED9 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9614892.1}))

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 401/493 (81.34%), Postives = 441/493 (89.45%), Query Frame = 0
 
Query:   22 EFRNMRRIA-------QAVDIKLLGSLSRDDLKKICGENFPEWISFPVYEQVKWLNKQLSKLWPFVADAATAIIKESVEPLLEEYRPAGITSMKFSKLSLGNVPPKIEG----------IRVQSLKEGQITMDIDFRWGGDPSIILGIEAAMVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAIGGSLTAIPGLSDMIDDTVNTIVTDMLQWPHRIVVPIGGVPVDTSDLELKPQGKLTLTVVKANELKNMEMIGKSDPYVVLYIRPLFKVKTKVVDNNLNPVWDETFELIAEDKETQALIFEVFDQDI-GQDKRLGIAKLPLRELEADTTKEMQLRLMPSLDMLKIKDKKDRGTITVKVLYHEFNKEEQYQALEDEKRILEERKKLKEAGVIGSTMDAVGAVGSGIGAGVGMVGTGLGAGVGIVGSGFGAVGSGLSKAGKFMGRSITGQST-SKKSGTSTPVNSTQENGGAK 495
             +R+ +RI+       QAVDIKLLGSLSRDDLKK+CG+NFPEWISFP YEQVKW+NKQLSKLWPFVADAAT +I+ESVEPLLEEYRP+GITS+KFSKLSLGNV PKIEG          IRVQSL++GQITMDIDFRWGGDPSIIL +EAA+VASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKA+GGSLTA+PG+SDMIDDTVNTIVTDMLQWPHRIVVPIGG+PVDTS+LELKPQGKLT+TVVKAN+LKNMEMIGKSDPY V+YIRPLF+VKTKV+DNNLNPVW+ TFELIAEDKETQ+LI EVFD+D+ GQDKRLGIAKLPL  LEA+  KEM LRL+PSLDMLKIKDKKDRGTITVK+LYH+FNKEEQ  ALE+EKRILEERKK+KEAG+IGSTMDA+    S        VG+GLGAG GIVGSGFGAV SGLSKAGKFMGRSITGQS+ SKKSGT+TPV   QENGGAK
Sbjct:   26 RYRSTKRISKFSYFSSQAVDIKLLGSLSRDDLKKLCGDNFPEWISFPKYEQVKWMNKQLSKLWPFVADAATMVIRESVEPLLEEYRPSGITSLKFSKLSLGNVAPKIEGLFQYGLVPYGIRVQSLQKGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTVIRVIFQLTDEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQWPHRIVVPIGGIPVDTSELELKPQGKLTVTVVKANDLKNMEMIGKSDPYAVVYIRPLFRVKTKVIDNNLNPVWNHTFELIAEDKETQSLILEVFDKDVAGQDKRLGIAKLPLINLEAEMPKEMDLRLLPSLDMLKIKDKKDRGTITVKILYHQFNKEEQLTALEEEKRILEERKKMKEAGMIGSTMDALDGAAS-------FVGSGLGAGAGIVGSGFGAVTSGLSKAGKFMGRSITGQSSASKKSGTNTPVTGVQENGGAK 511
Match NameStatsDescription
A0A218Y443E-Value: 0.000e+0, PID: 81.84(synaptotagmin-4-like isoform X1 {ECO:0000313|RefS... [more]
A0A7J6GVL6E-Value: 0.000e+0, PID: 81.21(Uncharacterized protein {ECO:0000313|EMBL:KAF4386... [more]
A0A067H4Q1E-Value: 0.000e+0, PID: 82.30(Uncharacterized protein {ECO:0000313|EMBL:KDO8590... [more]
V4TXY7E-Value: 0.000e+0, PID: 82.30(Uncharacterized protein {ECO:0000313|EMBL:ESR5845... [more]
A0A2I4GQX5E-Value: 0.000e+0, PID: 80.72(synaptotagmin-5-like {ECO:0000313|RefSeq:XP_01884... [more]
A0A059CJ19E-Value: 0.000e+0, PID: 80.72(Uncharacterized protein {ECO:0000313|EMBL:KCW7824... [more]
A0A022QTL8E-Value: 0.000e+0, PID: 82.34(Uncharacterized protein {ECO:0000313|EMBL:EYU3202... [more]
A0A2I4DNA4E-Value: 0.000e+0, PID: 82.38(synaptotagmin-5-like {ECO:0000313|RefSeq:XP_01880... [more]
A0A498KHR1E-Value: 0.000e+0, PID: 78.59(Uncharacterized protein {ECO:0000313|EMBL:RXI0693... [more]
A0A835IED9E-Value: 0.000e+0, PID: 81.34(Uncharacterized protein {ECO:0000313|EMBL:KAF9614... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.