MQQQQQQQPPPMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLV
DCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQ
AAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSG
GLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQ
DANEGSRVPSASGARSSATGKGSGDAEAK
| Relationships |
|---|
| The polypeptide, XM_017381309.1, derives from mRNA, XM_017381309.1. |
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
Match: A0A5B7B1A5 ((Putative GRF1-interacting factor 3 {ECO:0000313|EMBL:MPA62622.1}))
HSP 1 Score: 199.519 bits (506), Expect = 5.760e-62
Identity = 130/225 (57.78%), Postives = 146/225 (64.89%), Query Frame = 0
Query: 4 QQQQQPPPMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAEA 228
QQ Q P+MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P +P+QMAPHP MQ GGFYMQ PQAAA QQ + +PK PLQFN PH MQD QQQ+ L Q + G PG NN +P+H E + GGG GG + S AR GGSKQD E G SSA G GD E+
Sbjct: 2 QQPAQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPTMPTQMAPHPAMQQGGFYMQHPQAAAMA---QQSGIFSPKVPLQFNNPHQMQDQQQQQQLHQQHQQAIQAQIGMRPG-------GANNGMHPVHTETTLGGGSGGAPPTSTGQSDAR-GGSKQDIPEAGTA-GTDGQGSSAAGHNGGDGES 214
Match: A0A2C9VUL6 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 195.667 bits (496), Expect = 1.338e-60
Identity = 119/224 (53.12%), Postives = 140/224 (62.50%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAE 227
QQPP P+MPS+P +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P +P Q++PHP MQ G +YMQ PQAAA QQ + PK PLQFN PH MQD QQ + Q +QG + G R + NN +P+H EA+ G A S GG+KQDA + A G +SA G D E
Sbjct: 2 QQPPQMIPVMPSYPPANITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPTMPPQVSPHPAMQQGAYYMQHPQAAAMA---QQSGIFPPKMPLQFNNPHQMQDPQQ--LHQAAIQGQM-----------GMRPMGANNGMHPMHTEAAHGTSG----PSATAGSNDVRGGNKQDATDAG-ASGADGQGNSAAGHTGADGE 204
Match: A0A2P2JR90 ((Uncharacterized protein MANES_05G018100 {ECO:0000313|EMBL:MBW95991.1}))
HSP 1 Score: 193.741 bits (491), Expect = 6.481e-60
Identity = 119/228 (52.19%), Postives = 142/228 (62.28%), Query Frame = 0
Query: 7 QQPPPMMP---SFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGK--GSGDAEAK 229
QQP PM+P SFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQ LQKNLMYLAAIADAQPQ +P QMAPHP +Q G +YMQ PQ AA QQ + PK PLQFN PH + D QQ + Q +QG + G R + PNN +P+H E + G +T A S GGSKQDA++ V A G +S G G+G +AK
Sbjct: 2 QQPQPMIPTMASFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQVQLQKNLMYLAAIADAQPQAATMPPQMAPHPALQQGAYYMQHPQVAAMA---QQSGIFPPKMPLQFNNPHQIPDSQQ--LHQAAIQGQM-----------GMRPIGPNNGMHPMHAETAL----GSTVTSATAGSNDARGGSKQDASQAG-VTGADGQGTSGAGHSGGNGSEDAK 208
Match: A0A5J4ZRY0 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 191.43 bits (485), Expect = 8.391e-59
Identity = 125/225 (55.56%), Postives = 142/225 (63.11%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHH-VQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAE 227
QQPP P+MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P +P QMAPHP MQ G FYMQ PQAAA QQ + P+ PLQFN+PH MQD QQ + +QG + G R NN +P H EA+ GGG G S R GG+KQDA E +G SSA G G+ E
Sbjct: 2 QQPPQMIPVMPSFPPNNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPTMPPQMAPHPAMQQGAFYMQHPQAAAMA---QQPGIFPPRVPLQFNSPHQMQDQQQLHLQHQQAIQGQM-----------GVRPGGANNGMHPTHTEATLGGGSSGAPPPTAGLSDVR-GGNKQDAPEAGTA-GTNGQGSSAVGHSGGNEE 210
Match: A0A2H5P081 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 187.193 bits (474), Expect = 2.957e-57
Identity = 131/226 (57.96%), Postives = 147/226 (65.04%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAEAK 229
QQPP P+MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CAHYQA LQKNLMYLAAIADAQPQ P +P QMAPHP MQ G+YMQ PQAAA QQQ + K PLQFN PH +QD QQQ + QH + G R A NN +P+H E+S GGG G A P R GG+KQDA+E A G SSA G G EAK
Sbjct: 2 QQPPQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPPQMAPHPAMQASGYYMQHPQAAAMA---QQQGIFPQKMPLQFNNPHQLQDPQQQ-LHQHQA----------MQAQMGMRPGATNNGMHPMHAESSLGGGSSGGPPSASGPGDIR-GGNKQDASEAGTT-GADGQGSSAGGHGGDGEEAK 211
Match: A0A067HFB6 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 187.193 bits (474), Expect = 2.957e-57
Identity = 131/226 (57.96%), Postives = 147/226 (65.04%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAEAK 229
QQPP P+MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CAHYQA LQKNLMYLAAIADAQPQ P +P QMAPHP MQ G+YMQ PQAAA QQQ + K PLQFN PH +QD QQQ + QH + G R A NN +P+H E+S GGG G A P R GG+KQDA+E A G SSA G G EAK
Sbjct: 2 QQPPQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPPQMAPHPAMQASGYYMQHPQAAAMA---QQQGIFPQKMPLQFNNPHQLQDPQQQ-LHQHQA----------MQAQMGMRPGATNNGMHPMHAESSLGGGSSGGPPSASGPGDIR-GGNKQDASEAGTT-GADGQGSSAGGHGGDGEEAK 211
Match: V4TWR5 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 187.193 bits (474), Expect = 2.957e-57
Identity = 131/226 (57.96%), Postives = 147/226 (65.04%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSSATGKGSGDAEAK 229
QQPP P+MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CAHYQA LQKNLMYLAAIADAQPQ P +P QMAPHP MQ G+YMQ PQAAA QQQ + K PLQFN PH +QD QQQ + QH + G R A NN +P+H E+S GGG G A P R GG+KQDA+E A G SSA G G EAK
Sbjct: 2 QQPPQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLTECAHYQAQLQKNLMYLAAIADAQPQAPTMPPQMAPHPAMQASGYYMQHPQAAAMA---QQQGIFPQKMPLQFNNPHQLQDPQQQ-LHQHQA----------MQAQMGMRPGATNNGMHPMHAESSLGGGSSGGPPSASGPGDIR-GGNKQDASEAGTT-GADGQGSSAGGHGGDGEEAK 211
Match: A0A2G9H7Q9 ((Calcium-responsive transcription coactivator {ECO:0000313|EMBL:PIN13340.1}))
HSP 1 Score: 185.652 bits (470), Expect = 1.084e-56
Identity = 127/225 (56.44%), Postives = 145/225 (64.44%), Query Frame = 0
Query: 7 QQPPPM---MPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGARSS-ATGKGSGDAE 227
QQP PM MPSFP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P IP+QM+PHP +Q GGFYMQ PQAAAA QQQ + P+ P FN PH++QD Q QH QG + RSV P N NP H + S GGG+ + T S R GG+KQD +G S+ G SS A G GD E
Sbjct: 2 QQPGPMFPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAIPTQMSPHPAIQQGGFYMQHPQAAAA--MAQQQGMFPPRAP--FNNPHALQDPQ-----QHQPQGQM-----------ALRSVGPTNGVNPPHNDTSLGGGNSSVPTSNSGLSDIR-GGNKQDKPDGGGAASSDGKGSSAAVVHGGGDGE 205
Match: A0A067JWS9 (SSXT domain-containing protein {ECO:0000259|Pfam:PF05030})
HSP 1 Score: 184.882 bits (468), Expect = 2.714e-56
Identity = 120/212 (56.60%), Postives = 138/212 (65.09%), Query Frame = 0
Query: 7 QQPP---PMMPSFPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQP-VLTPKGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARGGGSKQDANEGSRVPSASGA 214
QQPP P+MPS+P +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P +P+QMAPHP MQ G +YMQ PQAAAA QQ + PK PLQFN PH +QD QQ + Q +QG + G R + PNN +P+H EA+ G T S GGSK DA E ASGA
Sbjct: 2 QQPPQMIPVMPSYPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPTMPTQMAPHPAMQQGAYYMQHPQAAAAAAAMAQQSGIFPPKMPLQFNNPHQIQDPQQ--LHQAVIQGQM-----------GMRPMGPNNGMHPMHAEATLGSSG----TSVAAGSNDVRGGSKPDAPEA----GASGA 192
Match: A0A4U5QTM1 ((GRF1-INTERACTING FACTOR 2 family protein {ECO:0000313|EMBL:TKS14374.1}))
HSP 1 Score: 184.496 bits (467), Expect = 3.705e-56
Identity = 120/228 (52.63%), Postives = 138/228 (60.53%), Query Frame = 0
Query: 7 QQPPPMMPS---FPQSNITTEQIQKYLDDNKKLILAIMDNQNLGKLVDCAHYQALLQKNLMYLAAIADAQPQGPMIPSQMAPHPMMQPGGFYMQQPQAAAAVPQQQQQPVLTP-KGPLQFNTPHSMQDLQQQKILQHHVQGGLPGPSGGLPGPSGTRSVAPNNSTNPIHMEASRGGGDGGLLTEAKTPSKARG-----GGSKQDANEGSRVPSASGARSSATGKGSGD 225
QQPP M+P FP +NITTEQIQKYLD+NKKLILAI+DNQNLGKL +CA YQA LQKNLMYLAAIADAQPQ P +P QMAPHP MQ G +YMQ PQAAA QQP + P K LQFN H MQD QQ + Q +QG + G R + NN +P+H E + G + PS + G GGSKQDA+E A G SA G D
Sbjct: 2 QQPPQMIPVISPFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQMAPHPAMQQGAYYMQHPQAAAMA----QQPGVFPQKMLLQFNAGHQMQDPQQ--LHQQAMQGQI-----------GIRPIGANNGMHPMHAEIALG---------SSGPSASAGTNDVRGGSKQDASEAGTT-GADGLGGSAAGHNGAD 202
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B1A5 | E-Value: 5.760e-62, PID: 57.78 | (Putative GRF1-interacting factor 3 {ECO:0000313|E... [more] |
| A0A2C9VUL6 | E-Value: 1.338e-60, PID: 53.13 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A2P2JR90 | E-Value: 6.481e-60, PID: 52.19 | (Uncharacterized protein MANES_05G018100 {ECO:0000... [more] |
| A0A5J4ZRY0 | E-Value: 8.391e-59, PID: 55.56 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A2H5P081 | E-Value: 2.957e-57, PID: 57.96 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A067HFB6 | E-Value: 2.957e-57, PID: 57.96 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| V4TWR5 | E-Value: 2.957e-57, PID: 57.96 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A2G9H7Q9 | E-Value: 1.084e-56, PID: 56.44 | (Calcium-responsive transcription coactivator {ECO... [more] |
| A0A067JWS9 | E-Value: 2.714e-56, PID: 56.60 | SSXT domain-containing protein {ECO:0000259|Pfam:P... [more] |
| A0A4U5QTM1 | E-Value: 3.705e-56, PID: 52.63 | (GRF1-INTERACTING FACTOR 2 family protein {ECO:000... [more] |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |